The generation of highly accurate models of behaviours of individual cells and cell populations through integration of high-resolution assays with advanced computational tools would transform precision medicine. Recent breakthroughs in single-cell and spatial transcriptomics and multi-omics technologies, coupled with artificial intelligence, are driving rapid progress in model development. Complementing the advances in artificial intelligence, quantum computing is maturing as a novel compute paradigm that may offer potential solutions to overcome the computational bottlenecks inherent to capturing cellular dynamics. In this Roadmap article, we discuss the advancements and challenges in spatiotemporal single-cell analysis, explore the possibility of quantum computing to address the challenges and present a case study on how quantum computing may be integrated into cell-based therapeutics. The specific confluence of quantum and classical computing with high-resolution assays may offer a crucial path towards the generation of transformative models of cellular behaviours and perturbation responses.
{"title":"Advancing single-cell omics and cell-based therapeutics with quantum computing.","authors":"Aritra Bose, Kahn Rhrissorrakrai, Filippo Utro, Laxmi Parida","doi":"10.1038/s41580-025-00918-0","DOIUrl":"10.1038/s41580-025-00918-0","url":null,"abstract":"<p><p>The generation of highly accurate models of behaviours of individual cells and cell populations through integration of high-resolution assays with advanced computational tools would transform precision medicine. Recent breakthroughs in single-cell and spatial transcriptomics and multi-omics technologies, coupled with artificial intelligence, are driving rapid progress in model development. Complementing the advances in artificial intelligence, quantum computing is maturing as a novel compute paradigm that may offer potential solutions to overcome the computational bottlenecks inherent to capturing cellular dynamics. In this Roadmap article, we discuss the advancements and challenges in spatiotemporal single-cell analysis, explore the possibility of quantum computing to address the challenges and present a case study on how quantum computing may be integrated into cell-based therapeutics. The specific confluence of quantum and classical computing with high-resolution assays may offer a crucial path towards the generation of transformative models of cellular behaviours and perturbation responses.</p>","PeriodicalId":19051,"journal":{"name":"Nature Reviews Molecular Cell Biology","volume":" ","pages":""},"PeriodicalIF":90.2,"publicationDate":"2026-01-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145889758","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-02DOI: 10.1038/s41580-025-00922-4
Léa Ripoll, Antje M Zickler, Pieter Vader, Samir El Andaloussi, Frederik J Verweij, Guillaume van Niel
Extracellular vesicles (EVs) have gained significant attention owing to their role in pathophysiological processes and potential as therapeutic tools. EVs are small vesicles (30 nm-5 µm) containing specific cargo (proteins, nucleic acids and lipids) and are released from most cell types. Their capacity to target and induce phenotypical changes in recipient cells has established them as key mediators of intercellular communication. Although EV biogenesis is well studied, their uptake and fate in recipient cells are still poorly understood. In this Review, we focus on the cell biology underlying EV interactions with recipient cells and their intracellular fate. We discuss the mechanisms EVs use to achieve cell-specific targeting, cell signalling and functional cargo delivery and list the key challenges currently limiting our ability to harness these EVs into efficient therapeutic nanovehicles. We explore how our understanding of the molecular mechanisms supporting interactions of EVs with recipient cells and their functions herein can provide new strategies to use them for therapeutic approaches.
{"title":"Biology and therapeutic potential of extracellular vesicle targeting and uptake.","authors":"Léa Ripoll, Antje M Zickler, Pieter Vader, Samir El Andaloussi, Frederik J Verweij, Guillaume van Niel","doi":"10.1038/s41580-025-00922-4","DOIUrl":"https://doi.org/10.1038/s41580-025-00922-4","url":null,"abstract":"<p><p>Extracellular vesicles (EVs) have gained significant attention owing to their role in pathophysiological processes and potential as therapeutic tools. EVs are small vesicles (30 nm-5 µm) containing specific cargo (proteins, nucleic acids and lipids) and are released from most cell types. Their capacity to target and induce phenotypical changes in recipient cells has established them as key mediators of intercellular communication. Although EV biogenesis is well studied, their uptake and fate in recipient cells are still poorly understood. In this Review, we focus on the cell biology underlying EV interactions with recipient cells and their intracellular fate. We discuss the mechanisms EVs use to achieve cell-specific targeting, cell signalling and functional cargo delivery and list the key challenges currently limiting our ability to harness these EVs into efficient therapeutic nanovehicles. We explore how our understanding of the molecular mechanisms supporting interactions of EVs with recipient cells and their functions herein can provide new strategies to use them for therapeutic approaches.</p>","PeriodicalId":19051,"journal":{"name":"Nature Reviews Molecular Cell Biology","volume":" ","pages":""},"PeriodicalIF":90.2,"publicationDate":"2026-01-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145889748","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-02DOI: 10.1038/s41580-025-00933-1
Fena Ochs, Daniel W Gerlich
Cohesin is a key regulator of three-dimensional genome organization, contributing to gene regulation, recombination, DNA repair and chromosome segregation. Like other members of the evolutionary conserved structural maintenance of chromosomes (SMC) protein-complex family, cohesin folds DNA through motor-driven loop extrusion. Cohesin has a unique, second activity of genome organization: it physically links sister chromatids together in replicated chromosomes, a process termed sister chromatid cohesion. Sister chromatid cohesion and loop extrusion are mediated by two distinct pools of cohesin, which share common core subunits, but associate with distinct regulatory subunits to interact with chromosomes in fundamentally different ways. In this Review, we discuss how sister chromatid cohesion is established and regulated, and how an interplay between cohesion and chromatin loops organizes replicated chromosomes. We also discuss how cohesion supports chromosome segregation in mitosis and meiosis, and how it contributes to DNA double-strand break repair and age-related oocyte aneuploidy. We outline recent technological advances that provide new opportunities to study cohesion and the conformation of replicated chromosomes, and we provide a perspective on how these tools might be applied to answer fundamental questions in cohesin biology.
{"title":"Organization of replicated chromosomes by DNA loops and sister chromatid cohesion.","authors":"Fena Ochs, Daniel W Gerlich","doi":"10.1038/s41580-025-00933-1","DOIUrl":"https://doi.org/10.1038/s41580-025-00933-1","url":null,"abstract":"<p><p>Cohesin is a key regulator of three-dimensional genome organization, contributing to gene regulation, recombination, DNA repair and chromosome segregation. Like other members of the evolutionary conserved structural maintenance of chromosomes (SMC) protein-complex family, cohesin folds DNA through motor-driven loop extrusion. Cohesin has a unique, second activity of genome organization: it physically links sister chromatids together in replicated chromosomes, a process termed sister chromatid cohesion. Sister chromatid cohesion and loop extrusion are mediated by two distinct pools of cohesin, which share common core subunits, but associate with distinct regulatory subunits to interact with chromosomes in fundamentally different ways. In this Review, we discuss how sister chromatid cohesion is established and regulated, and how an interplay between cohesion and chromatin loops organizes replicated chromosomes. We also discuss how cohesion supports chromosome segregation in mitosis and meiosis, and how it contributes to DNA double-strand break repair and age-related oocyte aneuploidy. We outline recent technological advances that provide new opportunities to study cohesion and the conformation of replicated chromosomes, and we provide a perspective on how these tools might be applied to answer fundamental questions in cohesin biology.</p>","PeriodicalId":19051,"journal":{"name":"Nature Reviews Molecular Cell Biology","volume":" ","pages":""},"PeriodicalIF":90.2,"publicationDate":"2026-01-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145889832","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-08DOI: 10.1038/s41580-025-00941-1
Kim Baumann
Jamieson and colleagues report the effects of spaceflight on haematopoietic stem and progenitor cells isolated from astronauts.
贾米森和他的同事报告了太空飞行对从宇航员身上分离的造血干细胞和祖细胞的影响。
{"title":"Space travel affects haematopoietic stem cells","authors":"Kim Baumann","doi":"10.1038/s41580-025-00941-1","DOIUrl":"10.1038/s41580-025-00941-1","url":null,"abstract":"Jamieson and colleagues report the effects of spaceflight on haematopoietic stem and progenitor cells isolated from astronauts.","PeriodicalId":19051,"journal":{"name":"Nature Reviews Molecular Cell Biology","volume":"27 1","pages":"7-7"},"PeriodicalIF":90.2,"publicationDate":"2025-12-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145704623","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-05DOI: 10.1038/s41580-025-00937-x
Eytan Zlotorynski
Target-directed miRNA degradation through interaction with non-coding parts of mRNAs is required for proper mammalian development.
通过与mrna的非编码部分相互作用,靶向miRNA降解是哺乳动物正常发育所必需的。
{"title":"Developmental triggers of microRNA decay","authors":"Eytan Zlotorynski","doi":"10.1038/s41580-025-00937-x","DOIUrl":"10.1038/s41580-025-00937-x","url":null,"abstract":"Target-directed miRNA degradation through interaction with non-coding parts of mRNAs is required for proper mammalian development.","PeriodicalId":19051,"journal":{"name":"Nature Reviews Molecular Cell Biology","volume":"27 1","pages":"4-4"},"PeriodicalIF":90.2,"publicationDate":"2025-12-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145680114","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-04DOI: 10.1038/s41580-025-00939-9
Kim Baumann
Following skin injury, macrophages infiltrate the adipose tissue, promoting adipocyte lipolysis, and the released fatty acids induce hair regrowth by activating hair follicle stem cells.
皮肤损伤后,巨噬细胞浸润脂肪组织,促进脂肪细胞脂解,释放的脂肪酸通过激活毛囊干细胞诱导毛发再生。
{"title":"Fatty acid signalling promotes hair regrowth","authors":"Kim Baumann","doi":"10.1038/s41580-025-00939-9","DOIUrl":"10.1038/s41580-025-00939-9","url":null,"abstract":"Following skin injury, macrophages infiltrate the adipose tissue, promoting adipocyte lipolysis, and the released fatty acids induce hair regrowth by activating hair follicle stem cells.","PeriodicalId":19051,"journal":{"name":"Nature Reviews Molecular Cell Biology","volume":"27 1","pages":"6-6"},"PeriodicalIF":90.2,"publicationDate":"2025-12-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145664474","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-04DOI: 10.1038/s41580-025-00938-w
Lisa Heinke
The transmembrane protein lunpark is enriched at endoplasmic reticulum junctions where it acts as an organization hub, integrating translation initiation control with nutrient sensing through association with lysosomes.
{"title":"A lunapark for secretory mRNA translation at ER junctions","authors":"Lisa Heinke","doi":"10.1038/s41580-025-00938-w","DOIUrl":"10.1038/s41580-025-00938-w","url":null,"abstract":"The transmembrane protein lunpark is enriched at endoplasmic reticulum junctions where it acts as an organization hub, integrating translation initiation control with nutrient sensing through association with lysosomes.","PeriodicalId":19051,"journal":{"name":"Nature Reviews Molecular Cell Biology","volume":"27 1","pages":"5-5"},"PeriodicalIF":90.2,"publicationDate":"2025-12-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145664471","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-27DOI: 10.1038/s41580-025-00921-5
Pierre Gönczy
{"title":"Critical constituents and assembly principles of centriole biogenesis in human cells","authors":"Pierre Gönczy","doi":"10.1038/s41580-025-00921-5","DOIUrl":"https://doi.org/10.1038/s41580-025-00921-5","url":null,"abstract":"","PeriodicalId":19051,"journal":{"name":"Nature Reviews Molecular Cell Biology","volume":"24 1","pages":""},"PeriodicalIF":112.7,"publicationDate":"2025-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145609206","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-27DOI: 10.1038/s41580-025-00934-0
Na Sun
Artificial intelligence (AI) offers new opportunities to model inter-organ communication and systemic biology. Integrating experimental advances with computational modelling presents key challenges, and here I propose future directions for building predictive, interpretable and generative frameworks that bridge molecular data to organism-level insights. In this Comment, Na Sun explores how artificial intelligence-driven methodologies are poised to transform systems biology, particularly in the realm of tissue modelling, and outlines the key challenges that must be overcome to enable the development of truly predictive biological systems.
{"title":"Challenges and potential applications of AI in systems biology","authors":"Na Sun","doi":"10.1038/s41580-025-00934-0","DOIUrl":"10.1038/s41580-025-00934-0","url":null,"abstract":"Artificial intelligence (AI) offers new opportunities to model inter-organ communication and systemic biology. Integrating experimental advances with computational modelling presents key challenges, and here I propose future directions for building predictive, interpretable and generative frameworks that bridge molecular data to organism-level insights. In this Comment, Na Sun explores how artificial intelligence-driven methodologies are poised to transform systems biology, particularly in the realm of tissue modelling, and outlines the key challenges that must be overcome to enable the development of truly predictive biological systems.","PeriodicalId":19051,"journal":{"name":"Nature Reviews Molecular Cell Biology","volume":"27 2","pages":"89-90"},"PeriodicalIF":90.2,"publicationDate":"2025-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145609204","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-27DOI: 10.1038/s41580-025-00935-z
Shiri Gur-Cohen
{"title":"Like water on rock, the microenvironment bends stem cell fate","authors":"Shiri Gur-Cohen","doi":"10.1038/s41580-025-00935-z","DOIUrl":"https://doi.org/10.1038/s41580-025-00935-z","url":null,"abstract":"","PeriodicalId":19051,"journal":{"name":"Nature Reviews Molecular Cell Biology","volume":"5 1","pages":""},"PeriodicalIF":112.7,"publicationDate":"2025-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145609461","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}