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Antibiotic-driven boosting of oncolytic virotherapy 抗生素推动溶瘤病毒疗法的发展
IF 28.1 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2024-11-28 DOI: 10.1038/s41551-024-01269-5
Himanshu Soni, E. Antonio Chiocca, Joshua D. Bernstock
Oncolytic viruses expressing transgenes for immunomodulatory cytokines can be produced at high throughput by exploiting the preferential susceptibility of the viruses to certain antibiotics.
表达免疫调节细胞因子转基因的肿瘤溶解病毒可利用病毒对某些抗生素的敏感性进行高通量生产。
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引用次数: 0
Antibiotic-mediated selection of randomly mutagenized and cytokine-expressing oncolytic viruses 抗生素介导的随机诱变和细胞因子表达溶瘤病毒的选择
IF 28.1 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2024-11-28 DOI: 10.1038/s41551-024-01259-7
Reza Rezaei, Stephen Boulton, Mahsa Ahmadi, Julia Petryk, Miles Da Silva, Nika Kooshki Zamani, Ragunath Singaravelu, Gabriel St-Laurent, Lauren Daniel, Arezoo Sadeghipour, Adrian Pelin, Joanna Poutou, Abril Ixchel Munoz Zuniga, Clarence Choy, Victoria H. Gilchrist, Zumama Khalid, Bradley Austin, Kemal Alper Onsu, Ricardo Marius, Zahra Ameli, Fazel Mohammadi, Valeria Mancinelli, Emily Wang, Abolfazl Nik-Akhtar, Akram Alwithenani, Fatemeh Panahi Arasi, Stephen S. G. Ferguson, Tom C. Hobman, Tommy Alain, Lee-Hwa Tai, Carolina S. Ilkow, Jean-Simon Diallo, John C. Bell, Taha Azad

Optimization of oncolytic viruses for therapeutic applications requires the strategic removal or mutagenesis of virulence genes alongside the insertion of transgenes that enhance viral replication, spread and immunogenicity. However, the complexity of many viral genomes and the labour-intensive nature of methods for the generation and isolation of recombinant viruses have hindered the development of therapeutic oncolytic viruses. Here we report an iterative strategy that exploits the preferential susceptibility of viruses to certain antibiotics to accelerate the engineering of the genomes of oncolytic viruses for the insertion of immunomodulatory cytokine transgenes, and the identification of dispensable genes with regard to replication of the recombinant oncolytic viruses in tumour cells. We applied the strategy by leveraging insertional mutagenesis via the Sleeping Beauty transposon system, combined with long-read nanopore sequencing, to generate libraries of herpes simplex virus type 1 and vaccinia virus, identifying stable transgene insertion sites and gene deletions that enhance the safety and efficacy of the viruses.

要优化用于治疗的溶瘤病毒,需要战略性地去除或诱变毒力基因,同时插入能增强病毒复制、传播和免疫原性的转基因。然而,许多病毒基因组的复杂性以及重组病毒生成和分离方法的劳动密集性阻碍了治疗性溶瘤病毒的开发。在这里,我们报告了一种迭代策略,它利用病毒对某些抗生素的优先易感性来加速溶瘤病毒基因组的工程化,以便插入免疫调节细胞因子转基因,并识别出重组溶瘤病毒在肿瘤细胞中复制时可有可无的基因。我们利用睡美人转座子系统的插入诱变技术,结合长读程纳米孔测序技术,生成了 1 型单纯疱疹病毒和疫苗病毒文库,确定了稳定的转基因插入位点和基因缺失点,提高了病毒的安全性和有效性。
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引用次数: 0
Antitumour vaccination via the targeted proteolysis of antigens isolated from tumour lysates 通过对从肿瘤裂解物中分离出来的抗原进行靶向蛋白水解来接种抗肿瘤疫苗
IF 28.1 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2024-11-28 DOI: 10.1038/s41551-024-01285-5
Yu Zhao, Donghui Song, Zeyu Wang, Qingqing Huang, Fan Huang, Zhongfeng Ye, Douglas Wich, Mengting Chen, Jennifer Khirallah, Shuliang Gao, Yang Liu, Qiaobing Xu

The activation of cytotoxic T cells against tumour cells typically requires the cross-presentation, by antigen-presenting cells (and via major histocompatibility complex class I molecules), of an epitope derived from a tumour antigen. A critical step in antigen processing is the proteolysis of tumour antigens mediated by the ubiquitin–proteasome pathway. Here we describe a tumour vaccine leveraging targeted antigen degradation to augment antigen processing and cross-presentation. Analogous to proteolysis-targeting chimaeras, the vaccine consists of lymph-node-targeting lipid nanoparticles encapsulated with tumour antigens pre-conjugated with ligands that can bind to E3 ubiquitin ligases. In mice with subcutaneous human melanoma or triple-negative breast cancer, or with orthotopic mouse Lewis lung carcinoma or clinically inoperable mouse ovarian cancer, subcutaneously delivered vaccines prepared using tumour lysate proteins elicited antigen-specific adaptive immunity and immunological memory, and inhibited tumour growth, metastasis and recurrence, particularly when combined with immune checkpoint inhibition.

激活细胞毒性 T 细胞对抗肿瘤细胞通常需要抗原递呈细胞(通过主要组织相容性复合体 I 类分子)交叉递呈来自肿瘤抗原的表位。抗原处理的一个关键步骤是通过泛素蛋白酶体途径对肿瘤抗原进行蛋白水解。在这里,我们描述了一种利用靶向抗原降解来增强抗原处理和交叉呈递的肿瘤疫苗。与蛋白酶靶向chimaeras类似,该疫苗由淋巴结靶向脂质纳米颗粒组成,其中封装有肿瘤抗原,并预先与能与E3泛素连接酶结合的配体结合。在患有皮下人类黑色素瘤或三阴性乳腺癌的小鼠,或患有正位小鼠刘易斯肺癌或临床上无法手术的小鼠卵巢癌的小鼠中,使用肿瘤裂解物蛋白制备的皮下注射疫苗激发了抗原特异性适应性免疫和免疫记忆,并抑制了肿瘤的生长、转移和复发,尤其是在与免疫检查点抑制相结合时。
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引用次数: 0
Safer and efficient base editing and prime editing via ribonucleoproteins delivered through optimized lipid-nanoparticle formulations 通过优化的脂质纳米颗粒配方输送核糖核蛋白,实现更安全高效的碱基编辑和基质编辑
IF 26.8 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2024-11-28 DOI: 10.1038/s41551-024-01296-2
Rafał Hołubowicz, Samuel W. Du, Jiin Felgner, Roman Smidak, Elliot H. Choi, Grazyna Palczewska, Carolline Rodrigues Menezes, Zhiqian Dong, Fangyuan Gao, Omar Medani, Alexander L. Yan, Maria W. Hołubowicz, Paul Z. Chen, Marco Bassetto, Eleonora Risaliti, David Salom, J. Noah Workman, Philip D. Kiser, Andrzej T. Foik, David C. Lyon, Gregory A. Newby, David R. Liu, Philip L. Felgner, Krzysztof Palczewski
Delivering ribonucleoproteins (RNPs) for in vivo genome editing is safer than using viruses encoding for Cas9 and its respective guide RNA. However, transient RNP activity does not typically lead to optimal editing outcomes. Here we show that the efficiency of delivering RNPs can be enhanced by cell-penetrating peptides (covalently fused to the protein or as excipients) and that lipid nanoparticles (LNPs) encapsulating RNPs can be optimized for enhanced RNP stability, delivery efficiency and editing potency. Specifically, after screening for suitable ionizable cationic lipids and by optimizing the concentration of the synthetic lipid DMG-PEG 2000, we show that the encapsulation, via microfluidic mixing, of adenine base editor and prime editor RNPs within LNPs using the ionizable lipid SM102 can result in in vivo editing-efficiency enhancements larger than 300-fold (with respect to the delivery of the naked RNP) without detectable off-target edits. We believe that chemically defined LNP formulations optimized for RNP-encapsulation stability and delivery efficiency will lead to safer genome editing. The safety and efficacy of ribonucleoproteins for genome editing can be enhanced by formulations of lipid nanoparticles optimized for enhanced stability, delivery efficiency and editing potency of the protein complexes.
为体内基因组编辑提供核糖核蛋白(RNPs)比使用编码 Cas9 及其相应引导 RNA 的病毒更安全。然而,瞬时的 RNP 活性通常不会带来最佳的编辑结果。在这里,我们展示了细胞穿透肽(与蛋白质共价融合或作为辅料)可以提高 RNP 的递送效率,并且可以优化封装 RNP 的脂质纳米颗粒(LNPs),以提高 RNP 的稳定性、递送效率和编辑效力。具体来说,在筛选了合适的可电离阳离子脂质并优化了合成脂质 DMG-PEG 2000 的浓度后,我们发现通过微流体混合将腺嘌呤碱基编辑物和质子编辑物 RNPs 封装在使用可电离脂质 SM102 的 LNPs 中,可使体内编辑效率提高 300 倍以上(与裸露 RNP 的递送相比),且不会出现可检测到的脱靶编辑。我们相信,针对 RNP 封装稳定性和递送效率进行优化的化学定义 LNP 配方将带来更安全的基因组编辑。
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引用次数: 0
Diagnosis of early-stage bladder cancer via unprocessed urine samples at the point of care 在医疗点通过未经处理的尿液样本诊断早期膀胱癌
IF 28.1 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2024-11-28 DOI: 10.1038/s41551-024-01298-0
Changjoon Keum, Haejin Yeom, Tae Il Noh, Seung Yong Yi, Soyeong Jin, Chaekyu Kim, Ji Sung Shim, Sung Goo Yoon, Hojun Kim, Kwan Hyi Lee, Seok Ho Kang, Youngdo Jeong

Diagnostic kits for the optical detection of bladder cancer in urine can facilitate effective screening and surveillance. However, the heterogeneity of urine samples, owing to patients with bladder cancer often presenting with haematuria, interfere with the transduction of the optical signal. Here we describe the development and point-of-care performance of a device for the detection of bladder cancer that obviates the need for sample processing. The device leverages the enzymatic release of organogel particles carrying solvatochromic fluorophores in the presence of urinary hyaluronidases—a bladder cancer biomarker. Owing to buoyancy, the particles transfer from the urine sample into the organic phase, where the change in fluorescence can be measured via a smartphone without interference from blood proteins. In a double-blind study with 80 unprocessed urine samples from patients with bladder cancer (including samples with haematuria) or other genitourinary diseases and with 25 samples from healthy participants, our system distinguished the cancerous samples, including those with early-stage bladder cancer, with accuracies of about 90%. Obviating the need for sample pretreatment may facilitate the at-home detection of bladder cancer.

光学检测尿液中膀胱癌的诊断试剂盒可促进有效的筛查和监测。然而,由于膀胱癌患者通常伴有血尿,尿液样本的异质性会干扰光学信号的转导。在此,我们介绍了一种无需样本处理的膀胱癌检测设备的开发和床旁性能。该设备利用了有机凝胶颗粒在尿液透明质酸酶(一种膀胱癌生物标志物)作用下的酶促释放,这种颗粒携带溶解变色荧光团。由于浮力的作用,颗粒会从尿液样本转移到有机相中,在有机相中,荧光的变化可以通过智能手机测量,而不会受到血液蛋白质的干扰。在一项针对 80 份未经处理的膀胱癌(包括血尿)或其他泌尿生殖系统疾病患者尿样和 25 份健康参与者尿样的双盲研究中,我们的系统能区分癌症样本,包括早期膀胱癌样本,准确率约为 90%。无需对样本进行预处理,这有助于在家检测膀胱癌。
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引用次数: 0
Optimization of the activity and biodegradability of ionizable lipids for mRNA delivery via directed chemical evolution 通过定向化学进化优化可离子化脂质的活性和生物降解性,用于 mRNA 输送
IF 26.8 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2024-11-22 DOI: 10.1038/s41551-024-01267-7
Xuexiang Han, Mohamad-Gabriel Alameh, Ying Xu, Rohan Palanki, Rakan El-Mayta, Garima Dwivedi, Kelsey L. Swingle, Junchao Xu, Ningqiang Gong, Lulu Xue, Qiangqiang Shi, Il-Chul Yoon, Claude C. Warzecha, James M. Wilson, Drew Weissman, Michael J. Mitchell
Ionizable lipids largely determine the biocompatibility of lipid nanoparticles (LNPs) and the efficacy for mRNA delivery. Rational design and combinatorial synthesis have led to the development of potent and biodegradable ionizable lipids, yet methodologies for the stepwise optimization of ionizable lipid structure are lacking. Here we show that iterative chemical derivatization and combinatorial chemistry, and in particular the amine–aldehyde–alkyne coupling reaction, can be leveraged to iteratively accelerate the structural optimization of propargylamine-based ionizable lipids (named A3-lipids) to improve their delivery activity and biodegradability. Through five cycles of such directed chemical evolution, we identified dozens of biodegradable and asymmetric A3-lipids with delivery activity comparable to or better than a benchmark ionizable lipid. We then derived structure−activity relationships for the headgroup, ester linkage and tail. Compared with standard ionizable lipids, the lead A3-lipid improved the hepatic delivery of an mRNA-based genome editor and the intramuscular delivery of an mRNA vaccine against SARS-CoV-2. Structural criteria for ionizable lipids discovered via directed chemical evolution may accelerate the development of LNPs for mRNA delivery. Directed chemical evolution can iteratively accelerate the structural optimization of ionizable lipids to improve their delivery activity and biodegradability for applications in lipid nanoparticle-mediated mRNA delivery.
可电离脂质在很大程度上决定了脂质纳米颗粒(LNPs)的生物相容性和 mRNA 递送的功效。合理的设计和组合合成已经开发出了强效和可生物降解的可离子化脂质,但目前还缺乏逐步优化可离子化脂质结构的方法。在这里,我们展示了迭代化学衍生和组合化学,特别是胺-醛-炔偶联反应,可用于加速丙炔胺基可离子化脂质(命名为 A3-脂质)的结构优化,以提高其递送活性和生物降解性。通过五个周期的定向化学进化,我们发现了数十种可生物降解的不对称 A3 脂,其递送活性与基准可电离脂相当或更好。然后,我们得出了头基、酯连接和尾部的结构-活性关系。与标准可离子化脂质相比,先导 A3 脂质改善了基于 mRNA 的基因组编辑器的肝脏递送和针对 SARS-CoV-2 的 mRNA 疫苗的肌肉递送。通过定向化学进化发现的可离子化脂质的结构标准可能会加速用于递送 mRNA 的 LNPs 的开发。
{"title":"Optimization of the activity and biodegradability of ionizable lipids for mRNA delivery via directed chemical evolution","authors":"Xuexiang Han,&nbsp;Mohamad-Gabriel Alameh,&nbsp;Ying Xu,&nbsp;Rohan Palanki,&nbsp;Rakan El-Mayta,&nbsp;Garima Dwivedi,&nbsp;Kelsey L. Swingle,&nbsp;Junchao Xu,&nbsp;Ningqiang Gong,&nbsp;Lulu Xue,&nbsp;Qiangqiang Shi,&nbsp;Il-Chul Yoon,&nbsp;Claude C. Warzecha,&nbsp;James M. Wilson,&nbsp;Drew Weissman,&nbsp;Michael J. Mitchell","doi":"10.1038/s41551-024-01267-7","DOIUrl":"10.1038/s41551-024-01267-7","url":null,"abstract":"Ionizable lipids largely determine the biocompatibility of lipid nanoparticles (LNPs) and the efficacy for mRNA delivery. Rational design and combinatorial synthesis have led to the development of potent and biodegradable ionizable lipids, yet methodologies for the stepwise optimization of ionizable lipid structure are lacking. Here we show that iterative chemical derivatization and combinatorial chemistry, and in particular the amine–aldehyde–alkyne coupling reaction, can be leveraged to iteratively accelerate the structural optimization of propargylamine-based ionizable lipids (named A3-lipids) to improve their delivery activity and biodegradability. Through five cycles of such directed chemical evolution, we identified dozens of biodegradable and asymmetric A3-lipids with delivery activity comparable to or better than a benchmark ionizable lipid. We then derived structure−activity relationships for the headgroup, ester linkage and tail. Compared with standard ionizable lipids, the lead A3-lipid improved the hepatic delivery of an mRNA-based genome editor and the intramuscular delivery of an mRNA vaccine against SARS-CoV-2. Structural criteria for ionizable lipids discovered via directed chemical evolution may accelerate the development of LNPs for mRNA delivery. Directed chemical evolution can iteratively accelerate the structural optimization of ionizable lipids to improve their delivery activity and biodegradability for applications in lipid nanoparticle-mediated mRNA delivery.","PeriodicalId":19063,"journal":{"name":"Nature Biomedical Engineering","volume":"8 11","pages":"1412-1424"},"PeriodicalIF":26.8,"publicationDate":"2024-11-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142684272","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Offbeat drug-delivery tactics 非传统的给药策略
IF 26.8 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2024-11-22 DOI: 10.1038/s41551-024-01317-0
More off-the-beaten-track strategies are needed for enhancing the accumulation of drugs at target sites, for improving the drugs’ cell-type specificity and for reducing their off-target toxicity.
我们需要更多的非主流策略,以增强药物在靶点的积累,提高药物的细胞类型特异性,降低药物的脱靶毒性。
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引用次数: 0
Solvent-mediated analgesia via the suppression of water permeation through TRPV1 ion channels 通过抑制 TRPV1 离子通道的水渗透实现溶剂介导的镇痛作用
IF 28.1 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2024-11-21 DOI: 10.1038/s41551-024-01288-2
Yuxia Liu, Yuanyuan He, Jiahuan Tong, Shengyang Guo, Xinyu Zhang, Zichao Luo, Linlin Sun, Chao Chang, Bilin Zhuang, Xiaogang Liu

Activation of the ion channel transient receptor potential vanilloid 1 (TRPV1), which is integral to pain perception, leads to an expansion of channel width, facilitating the passage of cations and large organic molecules. However, the permeability of TRPV1 channels to water remains uncertain, owing to a lack of suitable tools to study water dynamics. Here, using upconversion nanophosphors to discriminate between H2O and D2O, by monitoring water permeability across activated TRPV1 at the single-cell and single-molecule levels, and by combining single-channel current measurements with molecular dynamics simulations, we show that water molecules flow through TRPV1 and reveal a direct connection between water migration, cation flow and TRPV1 functionality. We also show in mouse models of acute or chronic inflammatory pain that the administration of deuterated water suppresses TRPV1 activity, interrupts the transmission of pain signals and mitigates pain without impacting other neurological responses. Solvent-mediated analgesia may inspire alternative options for pain management.

瞬时受体电位香草素 1(TRPV1)离子通道是痛觉的重要组成部分,它的激活会导致通道宽度的扩大,从而促进阳离子和大分子有机物的通过。然而,由于缺乏研究水动力学的合适工具,TRPV1 通道对水的渗透性仍不确定。在这里,我们利用上转换纳米磷酸盐来区分 H2O 和 D2O,在单细胞和单分子水平上监测活化的 TRPV1 的水渗透性,并将单通道电流测量与分子动力学模拟相结合,结果表明水分子流经 TRPV1,并揭示了水迁移、阳离子流和 TRPV1 功能之间的直接联系。我们还在急性或慢性炎症性疼痛的小鼠模型中表明,施用氘化水能抑制 TRPV1 的活性,中断疼痛信号的传递,减轻疼痛而不影响其他神经反应。溶剂介导的镇痛可能会激发疼痛治疗的替代选择。
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引用次数: 0
Clinical validation of a wearable ultrasound sensor of blood pressure 可穿戴式超声波血压传感器的临床验证
IF 28.1 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2024-11-20 DOI: 10.1038/s41551-024-01279-3
Sai Zhou, Geonho Park, Katherine Longardner, Muyang Lin, Baiyan Qi, Xinyi Yang, Xiaoxiang Gao, Hao Huang, Xiangjun Chen, Yizhou Bian, Hongjie Hu, Ray S. Wu, Wentong Yue, Mohan Li, Chengchangfeng Lu, Ruotao Wang, Siyu Qin, Esra Tasali, Theodore Karrison, Isac Thomas, Benjamin Smarr, Erik B. Kistler, Belal Al Khiami, Irene Litvan, Sheng Xu

Options for the continuous and non-invasive monitoring of blood pressure are limited. Cuff-based sphygmomanometers are widely available, yet provide only discrete measurements. The clinical gold-standard approach for the continuous monitoring of blood pressure requires an arterial line, which is too invasive for routine use. Wearable ultrasound for the continuous and non-invasive monitoring of blood pressure promises to elevate the quality of patient care, yet the isolated sonographic windows in the most advanced prototypes can lead to inaccurate or error-prone measurements, and the safety and performance of these devices have not been thoroughly evaluated. Here we describe validation studies, conducted during daily activities at home, in the outpatient clinic, in the cardiac catheterization laboratory and in the intensive care unit, of the safety and performance of a wearable ultrasound sensor for blood pressure monitoring. The sensor has closely connected sonographic windows and a backing layer that improves the sensor’s accuracy and reliability to meet the highest requirements of clinical standards. The validation results support the clinical use of the sensor.

连续和无创血压监测的选择非常有限。袖带式血压计广泛使用,但只能提供离散的测量值。连续监测血压的临床金标准方法需要动脉导管,这对常规使用来说创伤太大。用于连续、无创血压监测的可穿戴超声设备有望提高患者护理质量,但最先进的原型设备中孤立的超声窗口可能导致测量不准确或容易出错,而且这些设备的安全性和性能尚未得到全面评估。在此,我们介绍了在家庭、门诊、心导管实验室和重症监护室的日常活动中对用于血压监测的可穿戴超声波传感器的安全性和性能进行的验证研究。该传感器具有紧密连接的声像窗口和底层,可提高传感器的准确性和可靠性,从而满足临床标准的最高要求。验证结果支持该传感器的临床使用。
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引用次数: 0
Endocytic tagging for degradation 内切酶标记降解
IF 26.8 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2024-11-19 DOI: 10.1038/s41551-024-01293-5
Filipe V. Almeida
Proteins that tag surface receptors for degradation by triggering their endocytosis can be computationally designed so that they do not compete with native receptor ligands for binding.
通过触发受体的内吞作用来标记表面受体以便降解的蛋白质可以通过计算设计出来,使其不会与原生受体配体竞争结合。
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引用次数: 0
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