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Ablation of FAS confers allogeneic CD3– CAR T cells with resistance to rejection by T cells and natural killer cells 消融 FAS 使异体 CD3- CAR T 细胞具有抗 T 细胞和自然杀伤细胞排斥的能力
IF 26.8 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2024-11-18 DOI: 10.1038/s41551-024-01282-8
Silvia Menegatti, Sheila Lopez-Cobo, Aurelien Sutra Del Galy, Jaime Fuentealba, Lisseth Silva, Laetitia Perrin, Sandrine Heurtebise-Chrétien, Valentine Pottez-Jouatte, Aurelie Darbois, Nina Burgdorf, Anne-Laure Privat, Albane Simon, Marguerite Laprie-Sentenac, Michael Saitakis, Bryce Wick, Beau R. Webber, Branden S. Moriarity, Olivier Lantz, Sebastian Amigorena, Laurie Menger
Allogeneic chimaeric antigen receptor T cells (allo-CAR T cells) derived from healthy donors could provide rapid access to standardized and affordable batches of therapeutic cells if their rejection by the host’s immune system is avoided. Here, by means of an in vivo genome-wide CRISPR knockout screen, we show that the deletion of Fas or B2m in allo- T cells increases their survival in immunocompetent mice. Human B2M– allo-CAR T cells become highly sensitive to rejection mediated by natural killer (NK) cells, whereas FAS– CAR T cells expressing normal levels of human leukocyte antigen I remain resistant to NK cells. CD3– FAS– CAR T cells outperformed CD3– B2M– CAR T cells in the control of leukaemia growth in mice under allogeneic pressure by T cells and NK cells. The partial protection of CD3– FAS– allo-CAR T cells from cellular rejection may improve the efficacy of allogeneic cellular therapies in patients with cancer. The ablation of FAS and CD3 in allogeneic chimeric antigen receptor T cells confers them with partial protection from rejection by T cells and natural killer cells in immunocompetent hosts.
如果能避免宿主免疫系统对异体抗原受体 T 细胞(allo-CAR T 细胞)的排斥反应,那么从健康供体中提取的异体嵌合抗原受体 T 细胞(allo-CAR T 细胞)就能为人们提供快速获取标准化且价格合理的治疗细胞的途径。在这里,我们通过体内全基因组 CRISPR 基因敲除筛选表明,在allo-T 细胞中删除 Fas 或 B2m 能提高它们在免疫功能正常小鼠体内的存活率。人类 B2M- allo-CAR T 细胞对自然杀伤(NK)细胞介导的排斥反应高度敏感,而表达正常水平人类白细胞抗原 I 的 FAS- CAR T 细胞对 NK 细胞仍有抵抗力。在 T 细胞和 NK 细胞的异体压力下,CD3- FAS- CAR T 细胞在控制小鼠白血病生长方面优于 CD3- B2M- CAR T 细胞。CD3- FAS- allo-CAR T 细胞对细胞排斥反应的部分保护作用可能会提高癌症患者接受异体细胞疗法的疗效。
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引用次数: 0
Stress impacts immunity via the gut 压力通过肠道影响免疫力
IF 26.8 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2024-11-15 DOI: 10.1038/s41551-024-01294-4
Jennifer Haskell
Stress-sensitive neural circuitry affects immunity via the gut microbiome.
压力敏感神经回路通过肠道微生物组影响免疫力
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引用次数: 0
Dyeing mice transparent 将小鼠染成透明
IF 26.8 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2024-11-15 DOI: 10.1038/s41551-024-01292-6
Alessandra Griffo
A water-soluble dye that absorbs blue light strongly makes it easier to turn mice transparent.
一种能强烈吸收蓝光的水溶性染料能让小鼠更容易变成透明的。
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引用次数: 0
Seeing ageing through retinal images 通过视网膜图像看衰老
IF 26.8 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2024-11-15 DOI: 10.1038/s41551-024-01291-7
Pep Pàmies
A biomarker in retinal images identified by a deep-learning algorithm can predict biological age as well as mortality and morbidity.
深度学习算法识别的视网膜图像中的生物标志物可以预测生物年龄以及死亡率和发病率。
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引用次数: 0
Setting morphogen gradients 设置形态发生梯度
IF 26.8 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2024-11-15 DOI: 10.1038/s41551-024-01295-3
Valeria Caprettini
DNA microbeads loaded with an agonist for Wnt and injected into retinal organoids allow for the spatiotemporal control of gradients of the morphogen to better direct organoid development and maturation.
将装有 Wnt 激动剂的 DNA 微珠注射到视网膜器官组织中,可对形态发生器的梯度进行时空控制,从而更好地指导器官组织的发育和成熟。
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引用次数: 0
Endocisternal interfaces for minimally invasive neural stimulation and recording of the brain and spinal cord 用于对大脑和脊髓进行微创神经刺激和记录的腔内界面
IF 28.1 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2024-11-11 DOI: 10.1038/s41551-024-01281-9
Joshua C. Chen, Abdeali Dhuliyawalla, Robert Garcia, Ariadna Robledo, Joshua E. Woods, Fatima Alrashdan, Sean O’Leary, Adam Husain, Anthony Price, Scott Crosby, Michelle M. Felicella, Ajay K. Wakhloo, Patrick Karas, Nicole Provenza, Wayne Goodman, Sameer A. Sheth, Sunil A. Sheth, Jacob T. Robinson, Peter Kan

Minimally invasive neural interfaces can be used to diagnose, manage and treat many disorders, with reduced risks of surgical complications. However, endovascular probes lack access to key cortical, subcortical and spinal targets, and are not typically explantable after endothelialization. Here we report the development and testing, in sheep, of endocisternal neural interfaces that approach brain and spinal cord targets through inner and outer spaces filled with cerebrospinal fluid. Thus, the interfaces gain access to the entire brain convexity, to deep brain structures within the ventricles and to the spinal cord from the spinal subarachnoid space. We combined an endocisternal neural interface with wireless miniature magnetoelectrically powered bioelectronics so that it can be freely navigated percutaneously from the spinal space to the cranial subarachnoid space, and from the cranial subarachnoid space to the ventricles. In sheep, we show recording and stimulation functions, as well as repositioning of the flexible electrodes and explantation of the interface after chronic implantation. Minimally invasive endocisternal bioelectronics may enable chronic and transient therapies, particularly for stroke rehabilitation and epilepsy monitoring.

微创神经接口可用于诊断、管理和治疗多种疾病,并降低手术并发症的风险。然而,血管内探针无法进入关键的皮层、皮层下和脊柱靶点,而且在内皮化后通常无法拆卸。在此,我们报告了在绵羊身上开发和测试内腔神经接口的情况,这种接口可通过充满脑脊液的内部和外部空间接近大脑和脊髓目标。这样,接口就能进入整个大脑凸面、脑室内的大脑深层结构以及脊髓蛛网膜下腔的脊髓。我们将内腔神经接口与无线微型磁电驱动生物电子装置相结合,使其可以从脊柱间隙经皮自由导航到颅内蛛网膜下腔,再从颅内蛛网膜下腔导航到脑室。我们在绵羊身上展示了记录和刺激功能,以及长期植入后柔性电极的重新定位和接口的拆卸。微创腔内生物电子学可实现慢性和瞬时疗法,特别是用于中风康复和癫痫监测。
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引用次数: 0
A stealthy neural recorder for the study of behaviour in primates 用于灵长类动物行为研究的隐形神经记录器
IF 28.1 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2024-11-08 DOI: 10.1038/s41551-024-01280-w
Saehyuck Oh, Janghwan Jekal, Jinyoung Won, Kyung Seob Lim, Chang-Yeop Jeon, Junghyung Park, Hyeon-Gu Yeo, Yu Gyeong Kim, Young Hee Lee, Leslie Jaesun Ha, Han Hee Jung, Junwoo Yea, Hyeokjun Lee, Jeongdae Ha, Jinmo Kim, Doyoung Lee, Soojeong Song, Jieun Son, Tae Sang Yu, Jungmin Lee, Sanghoon Lee, Jaehong Lee, Bong Hoon Kim, Ji-Woong Choi, Jong-Cheol Rah, Young Min Song, Jae-Woong Jeong, Hyung Jin Choi, Sheng Xu, Youngjeon Lee, Kyung-In Jang

By monitoring brain neural signals, neural recorders allow for the study of neurological mechanisms underlying specific behavioural and cognitive states. However, the large brain volumes of non-human primates and their extensive range of uncontrolled movements and inherent wildness make it difficult to carry out covert and long-term recording and analysis of deep-brain neural signals. Here we report the development and performance of a stealthy neural recorder for the study of naturalistic behaviours in non-human primates. The neural recorder includes a fully implantable wireless and battery-free module for the recording of local field potentials and accelerometry data in real time, a flexible 32-electrode neural probe with a resorbable insertion shuttle, and a repeater coil-based wireless-power-transfer system operating at the body scale. We used the device to record neurobehavioural data for over 1 month in a freely moving monkey and leveraged the recorded data to train an artificial intelligence model for the classification of the animals’ eating behaviours.

通过监测脑神经信号,神经记录器可以研究特定行为和认知状态的神经机制。然而,非人灵长类动物的脑容量大,不受控制的运动范围广,且具有与生俱来的野性,因此很难对深层脑神经信号进行隐蔽、长期的记录和分析。在此,我们报告了用于研究非人灵长类动物自然行为的隐蔽式神经记录器的开发和性能。该神经记录器包括一个用于实时记录局部场电位和加速度数据的完全可植入式无线无电池模块、一个带有可吸收插入梭的灵活的 32 个电极神经探针和一个基于中继线圈的体表无线功率传输系统。我们使用该装置记录了一只自由活动的猴子一个多月的神经行为数据,并利用记录的数据训练了一个人工智能模型,用于对动物的进食行为进行分类。
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引用次数: 0
Large DNA deletions occur during DNA repair at 20-fold lower frequency for base editors and prime editors than for Cas9 nucleases 与 Cas9 核酸酶相比,碱基编辑器和质点编辑器在 DNA 修复过程中发生 DNA 大缺失的频率低 20 倍
IF 26.8 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2024-11-04 DOI: 10.1038/s41551-024-01277-5
Gue-Ho Hwang, Seok-Hoon Lee, Minsik Oh, Segi Kim, Omer Habib, Hyeon-Ki Jang, Heon Seok Kim, Youngkuk Kim, Chan Hyuk Kim, Sun Kim, Sangsu Bae
When used to edit genomes, Cas9 nucleases produce targeted double-strand breaks in DNA. Subsequent DNA-repair pathways can induce large genomic deletions (larger than 100 bp), which constrains the applicability of genome editing. Here we show that Cas9-mediated double-strand breaks induce large deletions at varying frequencies in cancer cell lines, human embryonic stem cells and human primary T cells, and that most deletions are produced by two repair pathways: end resection and DNA-polymerase theta-mediated end joining. These findings required the optimization of long-range amplicon sequencing, the development of a k-mer alignment algorithm for the simultaneous analysis of large DNA deletions and small DNA alterations, and the use of CRISPR-interference screening. Despite leveraging mutated Cas9 nickases that produce single-strand breaks, base editors and prime editors also generated large deletions, yet at approximately 20-fold lower frequency than Cas9. We provide strategies for the mitigation of such deletions. DNA repair after Cas9-mediated double-strand breaks induces large DNA deletions at frequencies 20-fold higher than elicited by base editors and prime editors leveraging Cas9 nickases producing single-strand breaks.
用于编辑基因组时,Cas9 核酸酶会在 DNA 上产生定向双链断裂。随后的DNA修复途径会诱发大的基因组缺失(大于100 bp),这限制了基因组编辑的适用性。我们在这里发现,Cas9 介导的双链断裂会在癌细胞系、人类胚胎干细胞和人类原代 T 细胞中以不同的频率诱导大的缺失,而且大多数缺失是通过两种修复途径产生的:末端切除和 DNA 聚合酶 theta 介导的末端连接。这些发现要求优化长程扩增片段测序、开发用于同时分析大DNA缺失和小DNA改变的k-mer比对算法,以及使用CRISPR干扰筛选。尽管利用突变的Cas9缺口酶会产生单链断裂,碱基编辑器和质粒编辑器也会产生大的缺失,但频率比Cas9低约20倍。我们提供了减少这种缺失的策略。
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引用次数: 0
Spatially resolved subcellular protein–protein interactomics in drug-perturbed lung-cancer cultures and tissues 药物干扰肺癌培养物和组织中空间分辨亚细胞蛋白质-蛋白质相互作用组学
IF 28.1 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2024-10-30 DOI: 10.1038/s41551-024-01271-x
Shuangyi Cai, Thomas Hu, Abhijeet Venkataraman, Felix G. Rivera Moctezuma, Efe Ozturk, Nicholas Zhang, Mingshuang Wang, Tatenda Zvidzai, Sandip Das, Adithya Pillai, Frank Schneider, Suresh S. Ramalingam, You-Take Oh, Shi-Yong Sun, Ahmet F. Coskun

Protein–protein interactions (PPIs) regulate signalling pathways and cell phenotypes, and the visualization of spatially resolved dynamics of PPIs would thus shed light on the activation and crosstalk of signalling networks. Here we report a method that leverages a sequential proximity ligation assay for the multiplexed profiling of PPIs with up to 47 proteins involved in multisignalling crosstalk pathways. We applied the method, followed by conventional immunofluorescence, to cell cultures and tissues of non-small-cell lung cancers with a mutated epidermal growth-factor receptor to determine the co-localization of PPIs in subcellular volumes and to reconstruct changes in the subcellular distributions of PPIs in response to perturbations by the tyrosine kinase inhibitor osimertinib. We also show that a graph convolutional network encoding spatially resolved PPIs can accurately predict the cell-treatment status of single cells. Multiplexed proximity ligation assays aided by graph-based deep learning can provide insights into the subcellular organization of PPIs towards the design of drugs for targeting the protein interactome.

蛋白质-蛋白质相互作用(PPIs)调控信号通路和细胞表型,因此可视化 PPIs 的空间分辨动态将揭示信号网络的激活和串扰。在此,我们报告了一种方法,该方法利用连续近接测定法对参与多信号串扰通路的多达 47 个蛋白质的 PPI 进行多重分析。我们将该方法应用于表皮生长因子受体突变的非小细胞肺癌的细胞培养和组织中,然后进行传统的免疫荧光,以确定 PPIs 在亚细胞体积中的共定位,并重建 PPIs 在酪氨酸激酶抑制剂奥希替尼的扰动下亚细胞分布的变化。我们还表明,编码空间解析 PPIs 的图卷积网络可以准确预测单个细胞的细胞处理状态。在基于图的深度学习的辅助下进行的多重近接检测可以深入了解PPIs的亚细胞组织,从而设计出靶向蛋白质相互作用组的药物。
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引用次数: 0
Ultrabright and ultrafast afterglow imaging in vivo via nanoparticles made of trianthracene derivatives 通过三蒽衍生物制成的纳米颗粒进行超亮、超快的体内余辉成像
IF 28.1 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2024-10-29 DOI: 10.1038/s41551-024-01274-8
Youjuan Wang, Jing Guo, Muchao Chen, Shiyi Liao, Li Xu, Qian Chen, Guosheng Song, Xiao-Bing Zhang

Low sensitivity, photobleaching, high-power excitation and long acquisition times constrain the utility of afterglow luminescence. Here we report the design and imaging performance of nanoparticles made of electron-rich trianthracene derivatives that, on excitation by room light at ultralow power (58 μW cm–2), emit afterglow luminescence at ~500 times those of commonly used organic afterglow nanoparticles. The nanoparticles’ ultrabright afterglow allowed for deep-tissue imaging (up to 6 cm), for ultrafast afterglow imaging (at short acquisition times down to 0.01 s) of naturally behaving mice with negligible photobleaching, even after re-excitation for over 15 cycles, and for the accurate visualization of subcutaneous and orthotopic tumours and of plaque in carotid arteries. We also show that an afterglow nanoparticle that is activated only in the presence of granzyme B allowed for the tracking of granzyme-B activity in the context of therapeutic monitoring. The high sensitivity and negligible photobleaching of the organic afterglow nanoparticles offer advantages for real-time in vivo monitoring of physiopathological processes.

灵敏度低、光漂白、高功率激发和较长的采集时间限制了余辉发光的实用性。在这里,我们报告了富电子蒽衍生物纳米粒子的设计和成像性能,这种纳米粒子在超低功率(58 μW cm-2)室光激发下发出的余辉是常用有机余辉纳米粒子的约 500 倍。这种纳米粒子的超亮余辉可用于深部组织成像(长达 6 厘米)、自然行为小鼠的超快余辉成像(短至 0.01 秒的采集时间),即使在重新激发超过 15 个周期后,光漂白现象也可忽略不计,还可用于皮下肿瘤、原位肿瘤和颈动脉斑块的精确成像。我们还展示了一种仅在颗粒酶 B 存在时才被激活的余辉纳米粒子,它可以在治疗监测中跟踪颗粒酶 B 的活性。有机余辉纳米粒子的高灵敏度和可忽略不计的光漂白为实时监测体内生理病理过程提供了优势。
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引用次数: 0
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Nature Biomedical Engineering
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