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A chemiluminescence assay targeting granzyme A activity for monitoring inflammatory bowel disease 一种针对颗粒酶A活性的化学发光试验用于监测炎症性肠病
IF 28.1 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2026-01-13 DOI: 10.1038/s41551-025-01588-1
Jamie I. Scott, Zhiming Cheng, Emily J. Thompson, Utsa Karmakar, Verity Cowell, Maya David, Doireann Gordon, Lorena Mendive-Tapia, Alexander Le Saint-Grant, Pia Volkmer, Cher S. Chuah, Phoebe Lau, Adriano G. Rossi, Wouter B. Nagengast, Doron Shabat, Gwo-Tzer Ho, Marc Vendrell
The diagnosis and monitoring of inflammatory bowel disease (IBD) relies on histologic and endoscopic analysis, as well as measurements of generic markers of inflammation. However, there are no specific tests that report on T cell-mediated immune responses as a key driver of IBD pathogenesis. Here we detect increasing granzyme A (GzmA) in gut biopsies and confirm that CD8+ T cells secrete its active form to induce interleukin (IL)-8. We then rationally design a non-invasive chemiluminescence assay for measuring active GzmA in stool supernatants from patients with IBD. For our assay, we synthesize peptide-based GzmA-specific inhibitors and chemiluminescent reporters and use them to characterize biosamples from ~150 human patients with IBD and healthy controls. Our results demonstrate that GzmA activity is an indicator of gut inflammation that can enhance the identification of patients with IBD over existing tests and potentially act as a mechanistic biomarker for the dominance of T cell activity. We envision that the selectivity and sensitivity of our GzmA activity-based optical assay will accelerate the design of additional biomedical approaches to enhance precision medicine in IBD.
炎症性肠病(IBD)的诊断和监测依赖于组织学和内窥镜分析,以及炎症的一般标记物的测量。然而,没有特异性的测试报告T细胞介导的免疫反应是IBD发病机制的关键驱动因素。在这里,我们检测到肠道活检中颗粒酶A (GzmA)的增加,并证实CD8+ T细胞分泌其活性形式来诱导白细胞介素(IL)-8。然后,我们合理地设计了一种无创化学发光法来测量IBD患者粪便上清液中的活性GzmA。在我们的实验中,我们合成了基于肽的gzma特异性抑制剂和化学发光报告因子,并使用它们来表征来自约150名IBD患者和健康对照的生物样品。我们的研究结果表明,GzmA活性是肠道炎症的一个指标,可以比现有的测试增强对IBD患者的识别,并可能作为T细胞活性优势的机制生物标志物。我们设想GzmA基于活性的光学检测的选择性和灵敏度将加速其他生物医学方法的设计,以增强IBD的精准医疗。
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引用次数: 0
Small intracellular vesicles outperform small extracellular vesicles in uptake, drug delivery and retinal neuroprotection 小细胞内囊泡优于小细胞外囊泡在摄取,药物传递和视网膜神经保护
IF 28.1 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2026-01-13 DOI: 10.1038/s41551-025-01596-1
Hui Zhang, Xinyue Yu, Fuhua Yang, Jinying An, Lin Su, Yuqing Liu, Mi Zhang, Ruiyan Fan, Hongli Yang, Xiaorong Li, Xiaomin Zhang
Small extracellular vesicles have been widely studied for their therapeutic properties and ability to deliver bioactive molecules. In addition to secretory vesicles, cells contain small intracellular vesicles involved in physiological and metabolic processes, whose therapeutic potential remains unexplored. Here we developed protocols to isolate small intracellular vesicles from multiple cell types and systematically compared their molecular and functional profiles to extracellular vesicles. Intracellular vesicles are smaller, yield higher quantities and demonstrate enhanced cellular uptake in both in vitro and in vivo models. Molecular profiling revealed that intracellular vesicles are enriched in proteins associated with the endoplasmic reticulum and Golgi apparatus, possess distinct microRNA signatures linked to intracellular membrane systems, and contain elevated levels of phospholipids such as phosphatidylcholine and phosphatidylethanolamine. Vesicles derived from umbilical cord mesenchymal stem cells showed superior therapeutic efficacy in a model of retinal degeneration by reducing endoplasmic reticulum stress and delivering neuroprotective factors. In addition, intracellular vesicles exhibited enhanced drug-loading capacity and efficient delivery of lipophilic compounds to the retina. These findings position intracellular vesicles as promising candidates for therapeutic applications.
细胞外小囊泡因其治疗特性和传递生物活性分子的能力而被广泛研究。除了分泌囊泡外,细胞内还含有参与生理和代谢过程的小细胞囊泡,其治疗潜力尚未开发。在这里,我们开发了从多种细胞类型中分离小细胞内囊泡的方案,并系统地比较了它们与细胞外囊泡的分子和功能特征。在体外和体内模型中,细胞内囊泡更小,产量更高,并且细胞摄取增强。分子分析显示,细胞内囊泡富含与内质网和高尔基体相关的蛋白质,具有与细胞膜系统相关的独特microRNA特征,并且含有高水平的磷脂,如磷脂酰胆碱和磷脂酰乙醇胺。来自脐带间充质干细胞的囊泡通过减少内质网应激和传递神经保护因子在视网膜变性模型中显示出优越的治疗效果。此外,细胞内囊泡表现出增强的药物装载能力和向视网膜有效传递亲脂化合物。这些发现使细胞内囊泡成为治疗应用的有希望的候选者。
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引用次数: 0
Real-time multimodal phenotyping reveals distinct tumour cell dynamics and immune escape mechanisms in T cell therapies. 实时多模态表型揭示了T细胞治疗中不同的肿瘤细胞动力学和免疫逃逸机制。
IF 28.1 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2026-01-12 DOI: 10.1038/s41551-025-01582-7
Shengjie Chen,Kunru Yu,Shengsen Zhang,Xiaoliang Guo,Rong Zhu
Adoptive T cell transfer therapy remains limited by the inability to monitor live tumour cell dynamics during treatment. Here we introduce a real-time, label-free phenotyping system that integrates electrical impedance spectroscopy, Raman spectroscopy and microscopy to analyse live tumour cells undergoing therapy. This system enables simultaneous tracking of metabolic activity, membrane integrity and cytoplasmic properties at single-cell resolution. First, analysis of glycolysis reveals that tumour-infiltrating lymphocytes suppress lactate production early, reducing tumour aggressiveness, while chimaeric antigen receptor T cells trigger tumour silent escape early and delay metabolic inhibition until later stages, culminating in cell death. Second, membrane profiling shows early phospholipid and cholesterol depletion under tumour-infiltrating lymphocyte treatment, with partial recovery, whereas chimaeric antigen receptor T cells cause progressive and irreversible membrane damage. Third, cytoplasmic analysis identifies early protein structural disruption and ionic imbalance under tumour-infiltrating lymphocyte therapy, while chimaeric antigen receptor T cells trigger delayed metabolic collapse and cytoplasmic contraction. These findings uncover distinct immune killing mechanisms and escape phases, offering mechanistic insights into tumour-immune interactions and informing the design of personalized therapeutic strategies.
过继性T细胞转移治疗仍然受到治疗期间无法监测活肿瘤细胞动力学的限制。在这里,我们介绍了一个实时的,无标签的表型系统,集成了电阻抗光谱,拉曼光谱和显微镜来分析正在接受治疗的活肿瘤细胞。该系统能够在单细胞分辨率下同时跟踪代谢活性,膜完整性和细胞质特性。首先,糖酵解分析表明,肿瘤浸润淋巴细胞早期抑制乳酸生成,降低肿瘤侵袭性,而嵌合抗原受体T细胞早期触发肿瘤沉默逃逸,延迟代谢抑制,直到后期,最终导致细胞死亡。其次,膜谱显示在肿瘤浸润性淋巴细胞治疗下早期磷脂和胆固醇消耗,部分恢复,而嵌合抗原受体T细胞导致进行性和不可逆的膜损伤。第三,细胞质分析确定肿瘤浸润淋巴细胞治疗下的早期蛋白质结构破坏和离子失衡,而嵌合抗原受体T细胞触发延迟代谢崩溃和细胞质收缩。这些发现揭示了不同的免疫杀伤机制和逃逸阶段,为肿瘤免疫相互作用提供了机制见解,并为个性化治疗策略的设计提供了信息。
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引用次数: 0
Wireless and bioresorbable triboelectric nerve block system for postoperative pain control. 无线和生物可吸收的摩擦电神经阻滞系统用于术后疼痛控制。
IF 28.1 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2026-01-09 DOI: 10.1038/s41551-025-01579-2
Young-Jun Kim,So-Hee Kim,Byung-Joon Park,Jinyoung Jeon,Donghyeon Kang,Youngwook Chung,Joon-Ha Hwang,Hong-Joon Yoon,Kyu Hyoung Lee,Byung-Ok Choi,Sang-Woo Kim
Amidst the chronic issue of opioid misuse, finding an alternative to pharmaceutical pain control following surgical interventions stands as a major hurdle. Conventional non-pharmacological pain control technologies often rely on rigid stimulators linking internal and external body components, thereby imposing nerve burden and additional interventions for the removal. Here we introduce a bioresorbable triboelectric nerve cuff activated via ultrasounds for pain control. The targeted nerves are enveloped around polymers with opposite triboelectric properties that vibrate upon ultrasound stimulation, generating an alternating triboelectric field parallel to the nerve for pain modulation. In vivo testing in rat and porcine models demonstrates that the fully implanted neurostimulator exerts no discernible impact on gait and yields immediate pain relief. Application of the implant until full resorbing caused no adverse effects in the nerve or surrounding muscle tissue, and behavioural analysis confirmed its effective pain control. The implantable pain control system might offer a drug-free alternative to pain management strategies, helping prevent drug abuse.
在阿片类药物滥用的慢性问题中,寻找手术干预后药物疼痛控制的替代方案是一个主要障碍。传统的非药物疼痛控制技术通常依赖于连接身体内外部件的刚性刺激器,从而增加神经负担和额外的干预措施。在这里,我们介绍了一种生物可吸收的摩擦电神经套,通过超声波激活来控制疼痛。目标神经被包裹在具有相反摩擦电特性的聚合物周围,这些聚合物在超声刺激下振动,产生与神经平行的交替摩擦电场来调节疼痛。在大鼠和猪模型的体内测试表明,完全植入的神经刺激器对步态没有明显的影响,并能立即缓解疼痛。植入物的应用直到完全吸收对神经或周围肌肉组织没有不良影响,行为分析证实其有效控制疼痛。植入式疼痛控制系统可能为疼痛管理策略提供一种无药物替代方案,有助于防止药物滥用。
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引用次数: 0
A deep learning and large language hybrid workflow for omics interpretation 用于组学解释的深度学习和大语言混合工作流
IF 28.1 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2026-01-08 DOI: 10.1038/s41551-025-01576-5
Dachao Tang, Chi Zhang, Weizhi Zhang, Funian Lu, Leming Xiao, Xinhe Huang, Jiangyi Shao, Dan Liu, Shanshan Fu, Miaoying Zhao, Luoying Zhang, Da Jia, Han-Ming Shen, Chaoyang Sun, Gang Chen, Bin Liu, Di Peng, Yu Xue
Profiling molecular panorama from massive omics data identifies regulatory networks in cells but requires mechanistic interpretation and experimental follow up. Here we combine deep learning and large language model reasoning to develop a hybrid workflow for omics interpretation, called LyMOI. LyMOI incorporates GPT-3.5 for biological knowledge reasoning and a large graph model with graph convolutional networks (GCNs). The large graph model integrates evolutionarily conserved protein interactions and uses hierarchical fine-tuning to predict context-specific molecular regulators from multi-omics data. GPT-3.5 then generates machine chain-of-thought (CoT) to mechanistically interpret their roles in biological systems. Focusing on autophagy, LyMOI mechanistically interprets 1.3 TB transcriptomic, proteomic and phosphoproteomic data and expands the knowledge of autophagy regulators. We also show that LyMOI highlights two human oncoproteins, CTSL and FAM98A, for enhancing autophagy upon treatment with disulfiram (DSF), an antitumour agent. Silencing these genes in vitro attenuates DSF-mediated autophagy and suppresses cancer cell proliferation. Strikingly, DSF treatment with Z-FY-CHO, a CTSL-specific inhibitor previously used for preventing SARS-CoV-2 infection, potently inhibits tumour growth in vivo.
从大量组学数据中分析分子全景识别细胞中的调节网络,但需要机制解释和实验跟进。在这里,我们将深度学习和大型语言模型推理结合起来,开发了一个用于组学解释的混合工作流程,称为LyMOI。LyMOI结合了用于生物知识推理的GPT-3.5和带有图卷积网络(GCNs)的大图模型。该大型图模型集成了进化保守的蛋白质相互作用,并使用分层微调来预测来自多组学数据的上下文特异性分子调节因子。然后,GPT-3.5生成机器思维链(CoT)来机械地解释它们在生物系统中的作用。LyMOI专注于自噬,对1.3 TB转录组学、蛋白质组学和磷酸化蛋白质组学数据进行了机制解释,扩展了自噬调节因子的知识。我们还发现LyMOI突出了两种人类癌蛋白,CTSL和FAM98A,用于增强抗肿瘤药物双硫拉姆(DSF)治疗后的自噬。体外沉默这些基因可减弱dsf介导的自噬并抑制癌细胞增殖。引人注目的是,用Z-FY-CHO(一种以前用于预防SARS-CoV-2感染的ctsl特异性抑制剂)治疗DSF可以有效抑制肿瘤在体内的生长。
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引用次数: 0
Engineered outer membrane vesicles enhance solid tumour CAR-T cell therapy 工程外膜囊泡增强实体肿瘤CAR-T细胞治疗
IF 28.1 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2026-01-07 DOI: 10.1038/s41551-025-01575-6
Xianjun Li, Xuehan Li, Jiaqi Shi, Yingjing Li, Hanyu Zhang, Tianjun Chen, Hui Pang, Shuyuan Zhang, Shengnan Luo, Fengyi Liu, Shuang Li, Chujie Ding, Linlin Sun, Fan Xing, Tongsen Zheng
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引用次数: 0
A multimodal vision–language model for generalizable annotation-free pathology localization 一种多模态视觉语言模型用于泛化无注释病理定位
IF 28.1 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2026-01-06 DOI: 10.1038/s41551-025-01574-7
Hao Yang, Hong-Yu Zhou, Jiarun Liu, Weijian Huang, Cheng Li, Zhihuan Li, Yuanxu Gao, Qiegen Liu, Yong Liang, Qi Yang, Song Wu, Tao Tan, Hairong Zheng, Kang Zhang, Shanshan Wang
{"title":"A multimodal vision–language model for generalizable annotation-free pathology localization","authors":"Hao Yang, Hong-Yu Zhou, Jiarun Liu, Weijian Huang, Cheng Li, Zhihuan Li, Yuanxu Gao, Qiegen Liu, Yong Liang, Qi Yang, Song Wu, Tao Tan, Hairong Zheng, Kang Zhang, Shanshan Wang","doi":"10.1038/s41551-025-01574-7","DOIUrl":"https://doi.org/10.1038/s41551-025-01574-7","url":null,"abstract":"","PeriodicalId":19063,"journal":{"name":"Nature Biomedical Engineering","volume":"42 1","pages":""},"PeriodicalIF":28.1,"publicationDate":"2026-01-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145902704","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
GaitDynamics: a generative foundation model for analyzing human walking and running GaitDynamics:用于分析人类行走和跑步的生成基础模型
IF 28.1 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2026-01-05 DOI: 10.1038/s41551-025-01565-8
Tian Tan, Tom Van Wouwe, Keenon F. Werling, C. Karen Liu, Scott L. Delp, Jennifer L. Hicks, Akshay S. Chaudhari
{"title":"GaitDynamics: a generative foundation model for analyzing human walking and running","authors":"Tian Tan, Tom Van Wouwe, Keenon F. Werling, C. Karen Liu, Scott L. Delp, Jennifer L. Hicks, Akshay S. Chaudhari","doi":"10.1038/s41551-025-01565-8","DOIUrl":"https://doi.org/10.1038/s41551-025-01565-8","url":null,"abstract":"","PeriodicalId":19063,"journal":{"name":"Nature Biomedical Engineering","volume":"381 1","pages":""},"PeriodicalIF":28.1,"publicationDate":"2026-01-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145902706","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Non-viral vectors as beacons of hope for reducing genotoxic risks of gene therapy 非病毒载体作为减少基因治疗基因毒性风险的希望灯塔
IF 28.1 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2026-01-05 DOI: 10.1038/s41551-025-01581-8
Marie-Madeleine Nzila, Ulrike Koehl, Zoltán Ivics
{"title":"Non-viral vectors as beacons of hope for reducing genotoxic risks of gene therapy","authors":"Marie-Madeleine Nzila, Ulrike Koehl, Zoltán Ivics","doi":"10.1038/s41551-025-01581-8","DOIUrl":"https://doi.org/10.1038/s41551-025-01581-8","url":null,"abstract":"","PeriodicalId":19063,"journal":{"name":"Nature Biomedical Engineering","volume":"41 1","pages":""},"PeriodicalIF":28.1,"publicationDate":"2026-01-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145902705","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
LDL-binding IL-10 reduces vascular inflammation in atherosclerotic mice. ldl结合IL-10减少动脉粥样硬化小鼠的血管炎症。
IF 26.8 1区 医学 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2026-01-02 DOI: 10.1038/s41551-025-01573-8
Lisa R Volpatti, Salvador Norton de Matos, Gustavo Borjas, Taryn N Beckman, Joseph W Reda, Elyse A Watkins, Zhengjie Zhou, Mindy Nguyen, Ani Solanki, Yun Fang, Jeffrey A Hubbell

Atherosclerosis is a chronic inflammatory disease associated with the accumulation of low-density lipoprotein (LDL) in arterial walls. Higher levels of the anti-inflammatory cytokine IL-10 in serum are correlated with reduced plaque burden. However, cytokine therapies have not translated well to the clinic, partially due to their rapid clearance and pleiotropic nature. Here we engineer IL-10 to overcome these challenges by hitchhiking on LDL to atherosclerotic plaques. Specifically, we construct Fab-IL-10 by fusing IL-10 to the antibody fragment (Fab) of four different oxidized LDL-binding antibodies. We show that systemically administered Fab-IL-10 constructs bind circulating LDL and traffic to atherosclerotic plaques in atherosclerosis mouse models. Among them, 2D03-IL-10 significantly reduces aortic immune cell infiltration to levels comparable to healthy mice, whereas non-targeted IL-10 has no therapeutic effect. Mechanistically, we demonstrate that 2D03-IL-10 preferentially associates with foamy macrophages and reduces pro-inflammatory activation markers. This modular technology may be applied to a variety of protein therapeutics and shows promise as a potential targeted anti-inflammatory therapy in atherosclerosis.

动脉粥样硬化是一种与动脉壁低密度脂蛋白(LDL)积累相关的慢性炎症性疾病。血清中抗炎细胞因子IL-10水平升高与斑块负担减轻相关。然而,细胞因子疗法并没有很好地转化为临床,部分原因是它们的快速清除和多效性。在这里,我们设计IL-10通过搭便车LDL到动脉粥样硬化斑块来克服这些挑战。具体而言,我们通过将IL-10融合到四种不同氧化ldl结合抗体的抗体片段(Fab)中构建Fab-IL-10。我们发现,在动脉粥样硬化小鼠模型中,系统给药的Fab-IL-10构建物结合循环LDL和动脉粥样硬化斑块的交通。其中,2D03-IL-10可显著降低主动脉免疫细胞浸润至与健康小鼠相当的水平,而非靶向IL-10无治疗作用。在机制上,我们证明2D03-IL-10优先与泡沫巨噬细胞结合并降低促炎激活标志物。这种模块化技术可以应用于多种蛋白质治疗,并有望成为动脉粥样硬化的潜在靶向抗炎治疗方法。
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引用次数: 0
期刊
Nature Biomedical Engineering
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