Mycological Progress最新文献

During our studies on the genus Lepiota in Pakistan, we collected two putatively new species from Punjab Province, with distinct morphology, ITS, and 28S of nrDNA profile. L. aurantiopilea is featured by orange to yellow-orange pileus with a reddish-brown umbo, tiny granules on the surface that are concolorous to pileus, absence of annulus, subglobose to oblong, ellipsoid or spurred basidiospores, clavate fusoid-ventricose, utriform cheilocystidia and hymeniderm made up clavate to subfusiform elements. Another new species, L. bahawalnagarensis has a light grayish-brown pileus with dark grayish-brown reddish-brown umbo, grayish-yellow brown zonation on the surface, pale yellow stipe, single-edged annulus, ellipsoid basidiospores, versiform cheilocystidia, hymeniderm pileipellis, and clavate to utriform caulocystidia. Photographs of fresh basidiomata, descriptions, and line drawings of key microscopic features are provided. Morphological characters and phylogenetic trees inferred from nrITS and 28S of nrDNA sequences show that both of our new species clustered within section Liliaceae.

Worldwide, the genus Colletotrichum has been poorly documented in forest trees compared to crops. In Chile, most of the records from native plants date from the beginning of the last century, and only a few species are properly identified according to modern taxonomy. To contribute to the knowledge of Colletotrichum species diversity in Chilean native forests, we examined 50 strains collected from 17 woody plant hosts between 36 and 40° S latitude in south-central Chile. Based on morphological characters, multi-locus phylogenetic analyses (ITS, GAPDH, CHS-1, HIS3, ACT, TUB2), and coalescent-based species delimitation methods, we identified ten species belonging to the Colletotrichum acutatum and Colletotrichum boninense species complexes. These were identified as Colletotrichum arboricola, C. brassicicola, C. godetiae, C. pyricola, C. rhombiforme, and C. roseum, along with the new species described here as C. americanum, C. laurosilvaticum, C. palki, and C. perseicola. We also propose to synonymize C. lauri with C. godetiae and C. australisinense with C. wanningense.

The genus Panus and many of its species have a wide geographic distribution, and in-depth up-to-date taxonomic review is needed that includes critical review of type materials within a phylogenetic frame. In order to recover the phylogenetic relationships within Panus species and their morphological boundaries and to critically analyze the diversity recorded for Brazil, we carried out fieldwork in poorly explored areas in the country and morphological and literature revisions of fungarium specimens, including several type materials. We present a comprehensive phylogeny of Panus and discuss several taxonomic and nomenclatural implications in order to achieve stability for species of the genus. Four new species are proposed, P. capelariae, P. pachysporus, P. speciosus, and P. stiptonotatus. Panus campinensis and P. thailandicus (an endophytic species) are proposed as new combinations in the genus, based on a morphological revision and phylogenetic evidence of their types, respectively. Additionally, Endopandanicola is synonymized within Panus, and P. parvus is synonymized within P. strigellus. The occurrence of P. conchatus, P. convivalis, P. fulvus, P. similis, and P. tephroleucus in Brazil is rejected due to morphological and phylogenetic evidences. For P. conchatus and P. similis, we present bases for the recognition of its sensu stricto status. We also discuss nomenclatural issues surrounding the Lentinus velutinus complex that include the basionym elucidation, its sensu stricto delimitation, and an epitypification based on a new sequenced specimen from the type locality. Our comprehensive assessment of Panus in Brazil has led to the confirmation of ten species supported by morphological and/or molecular data, which are critically discussed, and an identification key is presented.

Phytophthora species are a cause for concern due to their invasive potential and the damage they can cause in agriculture, forestry, and natural ecosystems worldwide. Since water plays a crucial role in their dispersal, stream and river baiting is commonly used to survey risk areas for the presence of quarantine Phytophthora species. However, our understanding of the distribution and diversity of Phytophthora species in European watercourses remains incomplete. This study investigated the presence and diversity of Phytophthora species in Swiss watercourses, with a focus on the highly urbanized Swiss Plateau. Over the period 2012–2016, we sampled 32 watercourses, including major rivers and smaller streams. We isolated Phytophthora on selective media and sequenced the internal transcribed spacer region to identify the species. We recovered 241 Phytophthora isolates, representing 11 species from five major clades. Phytophthora clade 6 prevailed, with P. lacustris being the most common, found in 94.7% of the watercourses. The number of Phytophthora species per watercourse ranged from one to five, with no correlation to watercourse complexity. Our study reveals the presence of six previously unreported species in Switzerland, while known invasive species were not found. Watercourses appear less suited to detect invasive pathogenic Phytophthora species with a still limited distribution in the environment.

Ten Argentinean Waitea circinata-like isolates (Corticiales, Basidiomycota) obtained from soil samples were identified to species level based on morphological features and molecular tools, and tested in order to explore their biological control abilities. Eight of them were identified as Waitea arvalis and two as W. circinata. Waitea arvalis isolates were tested as antagonists, and W. circinata isolates were used as pathogens. Most isolates performed well in in vitro antagonistic assays, inhibiting by 54–59% the growth of seven plant pathogens: Bipolaris sorokiniana, Fusarium graminearum, Fusarium oxysporum, Pythium irregulare, two different isolates of W. circinata and Sclerotium rolfsii. The most inhibited pathogen was P. irregulare (72.6%), followed by S. rolfsii (66.7%) and W. circinata (~ 65%). There was no evidence of mycoparasitism. Their capacity for chitinase, cellulase, protease and ligninase (laccase, Mn-peroxidase and lignin-peroxidase) secretion was evaluated. Most of the isolates tested positive for chitinase activity. All the evaluated W. arvalis isolates produced cellulase, protease and laccase activities, and some of them also rendered positive results for Mn-peroxidase and decolorized the dye Azure B. Isolates INTA-L003 and INTA-L005 displayed top results for cellulase activity (both in carboxymethylcellulose plate assay and in filter paper tube assay). These activities might be responsible for their better antagonistic behavior on Pythium sp. Thus, these isolates are promising as biocontrol agents and as sources of new enzymes for industrial applications. Moreover, to the best of our knowledge, this is the first citation of W. arvalis in Argentina.

Fulvifomes (Hymenochaetaceae) is a genus that was separated from Phellinus in the early 2000s based on internal transcribed spacer (ITS) and nuclear large ribosomal subunit (nLSU) analyses. Species recognition in the genus is challenging without molecular analysis due to general absence of discrete morphological characteristics. In this study, we examined Fulvifomes diversity in the Federated States of Micronesia (FS Micronesia), primarily found in the tropical and subtropical regions. Seven Fulvifomes species were confirmed: two new species, one unrecorded species and four species previously reallocated to Fulvifomes from other genera. We provide sequences including data on two protein-coding genes (RNA polymerase II; RPB2 and translation elongation factor-1 alpha; TEF1), nLSU and different conspecific ITS types.

The family Cucurbitariaceae is rich in species diversity and has a wide host range and geographic distribution. In this study, we identified 12 Cucurbitariaceae isolates which were obtained from disease symptoms in two forest trees in Khuzestan province, Iran. In addition, this family is reassessed using phylogenetic analyses based on DNA sequences from five nuclear regions (ITS, LSU, TUB2, TEF1α, and RPB2). The phylogenetic analyses showed that the present isolates represent one new genus, Nothocucurbitaria, and three new species, Allocucurbitaria galinsogisoli, Nothocucurbitaria izehica, and Parafenestella quercicola, which are described and illustrated. Furthermore, the genus Allocucurbitaria is emended to accommodate Seltsamia ulmi that grouped with the type species of Allocucurbitaria. Parafenestella pittospori and A. prunicola are recombined into the genera Neocucurbitaria and Nothocucurbitaria, respectively. Comparative analysis of single-locus trees revealed that the TUB2 and TEF1α can distinguish most genera and species in Cucurbitariaceae, while the ITS and LSU phylogenies show low resolution at both generic and species level. The best single-locus marker, RPB2, was able to distinguish all generic and most species lineages in Cucurbitariaceae.

Matter and energy fluxes and ecosystem services in streams rely on fungi associated with leaf litter. However, the species diversity of this microbial group may differ between a protected area and its surroundings. Thus, to understand how beta diversity may depend on the conservation status of an area, we aimed to evaluate the structure and diversity (α, β, and γ) of the aquatic fungal community from a subtropical area and how it is distributed in streams from a protected area and from a farmland area. Hence, we compared eight streams inside with eight streams outside of a protected area. This is one of the first studies testing the biotic homogenisation hypothesis for fungi associated with leaf litter in streams. We found new records of fungal species from a global biodiversity hotspot. The gamma diversity of aquatic fungi was surprisingly high. Our analyses indicated a process of environmental homogenisation of streams outside the national park. Intriguingly, neither α nor β diversity differed between areas. Environmental variables presented large differences, especially regarding nutrients, which influence the aquatic fungal community. Altogether, this national park seems to be effective in protecting the environmental heterogeneity of streams to some extent; however, the national park was likely suffering from pollution, which requires further investigation.

Abstract

Two new species of the lichen genus Lecaimmeria are described and illustrated from Pakistan, namely, Lecaimmeria asiatica and L. crispula. The former taxon is characterized by pale brown to dark brown thallus, up to 2-mm large areoles, flat to strongly convex apothecial disc, taller hymenium 120–150 µm, apically branched, not anastomosing paraphyses, large conidia 5–7 × 1.1–1.4 µm, with respect to ecology, and the absence of secondary metabolites, whereas L. crispula can be characterized by having a light brown to chocolate brown thallus, apothecia having flat to slightly concave discs with wavy margins that curl inward, a tall hymenium150–180 μm, branched and anastomosing paraphyses, large ascospores 25–33 × 12–17 μm, and absence of secondary metabolites. A phylogenetic analysis is provided based on nrITS and nrLSU sequences that support the separation of both novel species. Comparative analyses with related species of Lecaimmeria are provided to confirm the status of these species.

Abstract

The genus Tuber comprises ectomycorrhizal fungal species producing belowground ascomata, including the gastronomically most prominent hypogeous fungi. Since the discovery and description of new species are ongoing, the proportion of undescribed species can be considerable and the taxonomy of the genus goes often through changes. The taxonomy of the genus Tuber would therefore benefit from a periodic review. Tuber species described in Europe in recent decades include Tuber regianum, T. bernardinii and T. magentipunctatum. The common characteristics of these three species are the relatively small-sized spores with alveolate-reticulate ornamentation, a high number of spores per ascus (most frequently 6–8 spores) and small-sized ascomata with a verrucose-papillate or smooth surface. The present study aimed at examining the morphology and ecology of the three species, and providing a detailed taxonomic description of the Regianum clade using a multilocus phylogenetic analysis. In addition to this, we examined whether the apparently plesiomorphic morphological character states of this phylogenetically basal clade are the result of the conservation of ancestral character states. Our results show that in the case of certain morphological traits of the Regianum clade, the apparently plesiomorphic character states are indeed retained ancestral states, while in others, they are convergently reappeared ones. Furthermore, taking an overlook at all Tuber clades, we found that some morphological characters, such as spore length, number of spores per ascus and ascus length, changed together in the same evolutionary patterns, while others transformed in different ways within the genus.