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Paramagnetic salt and agarose recipes for phantoms with desired T1 and T2 values for low-field MRI. 顺磁盐和琼脂糖配方,为低场磁共振成像提供所需的 T1 和 T2 值模型。
IF 2.7 4区 医学 Q2 BIOPHYSICS Pub Date : 2025-01-01 Epub Date: 2024-11-17 DOI: 10.1002/nbm.5281
Kalina V Jordanova, Carla C Fraenza, Michele N Martin, Ye Tian, Sheng Shen, Christopher E Vaughn, Kevin J Walsh, Casey Walsh, Charlotte R Sappo, Stephen E Ogier, Megan E Poorman, Rui P Teixeira, William A Grissom, Krishna S Nayak, Matthew S Rosen, Andrew G Webb, Steven G Greenbaum, Velencia J Witherspoon, Kathryn E Keenan

Tissue-mimicking reference phantoms are indispensable for the development and optimization of magnetic resonance (MR) measurement sequences. Phantoms have greatest utility when they mimic the MR signals arising from tissue physiology; however, many of the properties underlying these signals, including tissue relaxation characteristics, can vary as a function of magnetic field strength. There has been renewed interest in magnetic resonance imaging (MRI) at field strengths less than 1 T, and phantoms developed for higher field strengths may not be physiologically relevant at these lower fields. This work focuses on developing materials with specific relaxation properties for lower magnetic field strengths. Specifically, we developed recipes that can be used to create synthetic samples for target nuclear magnetic resonance relaxation values for fields between 0.0065 and 0.55 T. T 1 $$ {T}_1 $$ and T 2 $$ {T}_2 $$ mixing models for agarose-based gels doped with a paramagnetic salt (one of CuSO4, GdCl3, MnCl2, or NiCl2) were created using relaxation measurements of synthetic gel samples at 0.0065, 0.064, and 0.55 T. Measurements were evaluated for variability with respect to measurement repeatability and changing synthesis protocol or laboratory temperature. The mixing models were used to identify formulations of agarose and salt composition to approximately mimic the relaxation times of five neurological tissues (blood, cerebrospinal fluid, fat, gray matter, and white matter) at 0.0065, 0.0475, 0.05, 0.064, and 0.55 T. These mimic sample formulations were measured at each field strength. Of these samples, the GdCl3 and NiCl2 measurements were closest to the target tissue relaxation times. The GdCl3 or NiCl2 mixing model recipes are recommended for creating target relaxation samples below 0.55 T. This work can help development of MRI methods and applications for low-field systems and applications.

组织模拟参考模型对于磁共振(MR)测量序列的开发和优化不可或缺。当模型模拟组织生理学产生的磁共振信号时,其效用最大;然而,这些信号的许多基本特性,包括组织弛豫特性,会随着磁场强度的变化而变化。人们对磁场强度小于 1 T 的磁共振成像(MRI)重新产生了兴趣,而为较高磁场强度开发的模型在这些较低磁场中可能与生理不相关。这项工作的重点是为较低磁场强度开发具有特定弛豫特性的材料。具体来说,我们开发的配方可用于创建目标核磁共振弛豫值在 0.0065 和 0.55 T 之间的合成样本。 通过在 0.0065、0.064 和 0.55 T 下对合成凝胶样品进行弛豫测量,建立了掺杂顺磁盐(CuSO4、GdCl3、MnCl2 或 NiCl2 中的一种)的琼脂糖基凝胶的 T 1 $$ {T}_1 $$ 和 T 2 $$ {T}_2 $$ 混合模型。根据测量的可重复性以及合成方案或实验室温度的变化,对测量结果的可变性进行了评估。混合模型用于确定琼脂糖和盐成分的配方,以近似模拟五种神经组织(血液、脑脊液、脂肪、灰质和白质)在 0.0065、0.0475、0.05、0.064 和 0.55 T 下的弛豫时间。在每个场强下都对这些模拟样本配方进行了测量。在这些样品中,GdCl3 和 NiCl2 的测量结果最接近目标组织的弛豫时间。建议使用 GdCl3 或 NiCl2 混合模型配方来制作 0.55 T 以下的目标弛豫样本。这项工作有助于开发低场系统和应用的磁共振成像方法和应用。
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引用次数: 0
Dynamic glucose-enhanced MRI of gliomas: A preliminary clinical application. 胶质瘤的动态葡萄糖增强磁共振成像:初步临床应用。
IF 2.7 4区 医学 Q2 BIOPHYSICS Pub Date : 2025-01-01 Epub Date: 2024-11-05 DOI: 10.1002/nbm.5265
Jianhua Mo, Xiang Xu, Andong Ma, Mingjun Lu, Xianlong Wang, Qihong Rui, Jianbin Zhu, Haitao Wen, Genyun Lin, Linda Knutsson, Peter van Zijl, Zhibo Wen

The study aimed to investigate the feasibility of dynamic glucose-enhanced (DGE) MRI technology in the clinical application of glioma. Twenty patients with glioma were examined using a preoperative DGE-MRI protocol before clinical intervention. A brief hyperglycemic state was achieved by injecting 50 mL of 50% w/w D-glucose intravenously during the DGE imaging. The total acquisition time for the DGE was 15 min. Area-under-the-curve (AUC) images were calculated using the DGE images. AUC2-7min values of the glioma core, margin area, edema area, and contralateral brain parenchyma were compared using Mann-Whitney U tests. Overall, gray and white matter areas in the AUC images showed relatively low DGE signal change and bilateral symmetry. However, the tumor cores displayed a significant hyperintensity. A high DGE signal change was also seen in the necrotic, cystic, and cerebrospinal areas. These results show that DGE MRI is a feasible technique for the study of brain tumors as part of a clinical exam. Importantly, DGE MRI showed enhancement in areas confirmed histopathologically as tumors, whereas Gd T1w MRI did not show any enhancement in this area. Since the D-glucose molecule is smaller than Gd-based contrast agents, DGE MRI may be more sensitive to subtle blood-brain barrier disruptions, thus potentially providing early information about possible malignancy. These findings provide a new perspective for the further exploration and analysis of D-glucose uptake in brain tumors.

该研究旨在探讨动态葡萄糖增强(DGE)磁共振成像技术在胶质瘤临床应用中的可行性。在临床干预前,20 名胶质瘤患者接受了术前 DGE-MRI 方案检查。在 DGE 成像过程中,通过静脉注射 50 mL 50% w/w D-葡萄糖来实现短暂的高血糖状态。DGE 的总采集时间为 15 分钟。利用 DGE 图像计算曲线下面积(AUC)图像。使用 Mann-Whitney U 检验比较胶质瘤核心区、边缘区、水肿区和对侧脑实质的 AUC2-7min 值。总体而言,AUC 图像中的灰质和白质区域显示出相对较低的 DGE 信号变化和双侧对称性。然而,肿瘤核心显示出明显的高密度。坏死区、囊肿区和脑脊液区也出现了较高的 DGE 信号变化。这些结果表明,作为临床检查的一部分,DGE MRI 是一种研究脑肿瘤的可行技术。重要的是,DGE MRI 在组织病理学证实为肿瘤的区域显示出增强,而 Gd T1w MRI 在这一区域未显示出任何增强。由于 D-葡萄糖分子比 Gd 造影剂小,因此 DGE MRI 可能对细微的血脑屏障破坏更敏感,从而有可能提供有关可能的恶性肿瘤的早期信息。这些发现为进一步探索和分析脑肿瘤的 D-葡萄糖摄取提供了新的视角。
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引用次数: 0
A Double-Layer 1H/23Na Transceiver Array for Human Brain MRI at 7T. 用于人脑7T MRI的双层1H/23Na收发器阵列。
IF 2.7 4区 医学 Q2 BIOPHYSICS Pub Date : 2025-01-01 DOI: 10.1002/nbm.70162
Feiyang Lou, Caohui Duan, Zhiyan Quan, Jianxun Qu, Chenlu Guo, Armin M Nagel, Xin Lou, Xiaotong Zhang

With the increasing adoption of ultra-high-field (UHF) systems, sodium (23Na) imaging is undergoing clinical translation. However, existing commercially available dual-tuned coils, while demonstrating adequate sodium signal-to-noise ratio (SNR), fail to meet the requirements for high-resolution proton (1H) structural imaging, resulting in suboptimal workflow efficiency during integrated multi-nucleus examinations. In this work, we present a novel double-layer 1H/23Na transceiver array with eight channels per nucleus for human brain MRI at 7T. The proposed array achieved 64% of the 1H SNR of the 32-channel receive array commonly used in clinical practice. By integrating dual-nucleus imaging capabilities within a single platform, this design eliminates coil-switching requirements and post-acquisition registration, thereby streamlining clinical workflows and advancing sodium MRI translational feasibility.

随着超高场(UHF)系统的越来越多的采用,钠(23Na)成像正在进行临床转化。然而,现有的商用双调谐线圈虽然具有足够的钠信噪比(SNR),但无法满足高分辨率质子(1H)结构成像的要求,导致集成多核检查的工作效率不理想。在这项工作中,我们提出了一种新型的双层1H/23Na收发器阵列,每个核有8个通道,用于人脑7T MRI。该阵列的1H信噪比是临床常用的32通道接收阵列的64%。通过在单一平台中集成双核成像功能,该设计消除了线圈切换要求和采集后注册,从而简化了临床工作流程,提高了钠核磁共振成像转化的可行性。
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引用次数: 0
Different Grey Matter Microstructural Patterns in Cognitively Healthy Versus Typical Ageing Healthy Versus Typical Brain Ageing. 认知健康与典型衰老的不同灰质微结构模式。
IF 2.7 4区 医学 Q2 BIOPHYSICS Pub Date : 2025-01-01 DOI: 10.1002/nbm.5305
Pavel Filip, J Riley McCarten, Laura Hemmy, Jillian Crocker, Michael Wolf, Jeromy Thotland, Zuzan Cayci, Shalom Michaeli, Lynn E Eberly, Melissa Terpstra, Silvia Mangia

Ageing is a complex phenomenon affecting a wide range of coexisting biological processes. The homogeneity of the studied population is an essential parameter for valid interpretations of outcomes. The presented study capitalises on the MRI data available in the Human Connectome Project-Aging (HCP-A) and, within individuals over 55 years of age who passed the HCP-A section criteria, compares a subgroup of 37 apparently neurocognitively healthy individuals selected based on stringent criteria with 37 age and sex-matched individuals still representative of typical ageing but who did not pass the stringent definition of neurocognitively healthy. Specifically, structural scans, diffusion weighted imaging and T1w/T2w ratio were utilised. Furthermore, data of 26 HCP-A participants older than 90 years as notional 'super-agers' were analysed. The relationship of age and several microstructural MRI metrics (T1w/T2w ratio, mean diffusivity, intracellular volume fraction and free water volume fraction) differed significantly between typical and healthy ageing cohort in areas highly relevant for ageing such as hippocampus, prefrontal and temporal cortex and cerebellum. However, the trajectories of the healthy ageing population did not show substantially better overlap with the findings in people older than 90 than those of the typical population. Therefore, caution must be exercised in the choice of adequate study group characteristics relevant for respective ageing-related hypotheses. Contrary to typical ageing group, the healthy ageing cohort may show generally stable levels of several MRI metrics of interest.

老龄化是一个复杂的现象,影响着多种并存的生物过程。研究人群的同质性是有效解释结果的一个基本参数。本研究利用 "人类连接组计划-老龄化"(HCP-A)中的核磁共振成像数据,在通过 HCP-A 部分标准的 55 岁以上人群中,将根据严格标准选出的 37 名明显神经认知健康的人与 37 名年龄和性别匹配、仍代表典型老龄化但未通过神经认知健康严格定义的人进行比较。具体而言,研究采用了结构扫描、弥散加权成像和 T1w/T2w 比值。此外,还分析了 26 名年龄超过 90 岁的 HCP-A 参与者的数据,他们是名义上的 "超级长者"。在海马、前额叶和颞叶皮层以及小脑等与老龄化高度相关的区域,年龄与几项微结构 MRI 指标(T1w/T2w 比值、平均弥散率、细胞内体积分数和自由水体积分数)的关系在典型老龄化人群和健康老龄化人群之间存在显著差异。然而,与典型人群相比,健康老龄人群的轨迹与 90 岁以上人群的研究结果并没有明显的重叠。因此,在选择与各自老龄化相关假说有关的适当研究群体特征时必须谨慎。与典型的老龄化人群相反,健康的老龄化人群可能会在几个相关的磁共振成像指标上表现出总体稳定的水平。
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引用次数: 0
Deuterium Metabolic Imaging Enables the Tracing of Substrate Fluxes Through the Tricarboxylic Acid Cycle in the Liver. 氘代谢成像可追踪肝脏三羧酸循环中的底物通量。
IF 2.7 4区 医学 Q2 BIOPHYSICS Pub Date : 2025-01-01 DOI: 10.1002/nbm.5309
Viktoria Ehret, Sabine C Dürr, Usevalad Ustsinau, Joachim Friske, Thomas Scherer, Clemens Fürnsinn, Jana Starčuková, Thomas H Helbich, Cécile Philippe, Martin Krššák

Alterations in tricarboxylic acid (TCA) cycle metabolism are associated with hepatic metabolic disorders. Elevated hepatic acetate concentrations, often attributed to high caloric intake, are recognized as a pivotal factor in the etiology of obesity and metabolic syndrome. Therefore, the assessment of acetate breakdown and TCA cycle activity plays a central role in understanding the impact of diet-induced alterations on liver metabolism. Magnetic resonance-based deuterium metabolic imaging (DMI) could help to unravel the underlying mechanisms involved in disease development and progression, however, the application of conventional deuterated glucose does not lead to substantial enrichment in hepatic glutamine and glutamate. This study aimed to demonstrate the feasibility of DMI for tracking deuterated acetate breakdown via the TCA cycle in lean and diet-induced fatty liver (FL) rats using 3D DMI after an intraperitoneal infusion of sodium acetate-d3 at 9.4T. Localized and nonlocalized liver spectra acquired at 10 time points post-injection over a 130-min study revealed similar intrahepatic acetate uptake in both animal groups (AUCFL = 717.9 ± 131.1 mM▯min-1, AUClean = 605.1 ± 119.9 mM▯min-1, p = 0.62). Metabolic breakdown could be observed in both groups with an emerging glutamine/glutamate (Glx) peak as a downstream metabolic product (AUCFL = 113.6 ± 23.8 mM▯min-1, AUClean = 136.7 ± 41.7 mM▯min-1, p = 0.68). This study showed the viability of DMI for tracking substrate flux through the TCA cycle, underscoring its methodological potential for imaging metabolic processes in the body.

三羧酸(TCA)循环代谢的改变与肝脏代谢紊乱有关。肝脏乙酸盐浓度升高通常归因于高热量摄入,被认为是肥胖和代谢综合征病因的关键因素。因此,评估醋酸盐分解和 TCA 循环活动在了解饮食引起的肝脏代谢变化的影响方面起着核心作用。基于磁共振的氘代谢成像(DMI)有助于揭示疾病发生和发展的内在机制,然而,应用传统的氘化葡萄糖并不能大量富集肝谷氨酰胺和谷氨酸。本研究旨在证明,在 9.4T 下腹腔注射醋酸钠-d3 后,使用三维 DMI 跟踪瘦大鼠和饮食诱导的脂肪肝(FL)大鼠通过 TCA 循环分解氘化醋酸盐的可行性。在 130 分钟的研究中,在注射后 10 个时间点采集的局部和非局部肝脏光谱显示,两组动物的肝内醋酸摄取量相似(AUCFL = 717.9 ± 131.1 mM▯min-1,AUClean = 605.1 ± 119.9 mM▯min-1,p = 0.62)。两组均可观察到代谢分解,谷氨酰胺/谷氨酸(Glx)峰作为下游代谢产物出现(AUCFL = 113.6 ± 23.8 mM▯min-1,AUClean = 136.7 ± 41.7 mM▯min-1,p = 0.68)。这项研究显示了 DMI 跟踪 TCA 循环中底物通量的可行性,凸显了其对体内代谢过程成像的方法学潜力。
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引用次数: 0
Macromolecule Modelling for Improved Metabolite Quantification Using Short Echo Time Brain 1H-MRS at 3 T and 7 T: The PRaMM Model. 利用3 T和7 T时短回波时间脑1H-MRS改进代谢物定量的大分子模型:PRaMM模型。
IF 2.7 4区 医学 Q2 BIOPHYSICS Pub Date : 2025-01-01 DOI: 10.1002/nbm.5299
Andrea Dell'Orco, Layla Tabea Riemann, Stephen L R Ellison, Semiha Aydin, Laura Göschel, Bernd Ittermann, Anna Tietze, Michael Scheel, Ariane Fillmer

To improve reliability of metabolite quantification at both, 3 T and 7 T, we propose a novel parametrized macromolecules quantification model (PRaMM) for brain 1H MRS, in which the ratios of macromolecule peak intensities are used as soft constraints. Full- and metabolite-nulled spectra were acquired in three different brain regions with different ratios of grey and white matter from six healthy volunteers, at both 3 T and 7 T. Metabolite-nulled spectra were used to identify highly correlated macromolecular signal contributions and estimate the ratios of their intensities. These ratios were then used as soft constraints in the proposed PRaMM model for quantification of full spectra. The PRaMM model was validated by comparison with a single-component macromolecule model and a macromolecule subtraction technique. Moreover, the influence of the PRaMM model on the repeatability and reproducibility compared with those other methods was investigated. The developed PRaMM model performed better than the two other approaches in all three investigated brain regions. Several estimates of metabolite concentration and their Cramér-Rao lower bounds were affected by the PRaMM model reproducibility, and repeatability of the achieved concentrations were tested by evaluating the method on a second repeated acquisitions dataset. Although the observed effects on both metrics were not significant, the fit quality metrics were improved for the PRaMM method (p ≤ 0.0001). Minimally detectable changes are in the range 0.5-1.9 mM, and the percentage coefficients of variations are lower than 10% for almost all the clinically relevant metabolites. Furthermore, potential overparameterization was ruled out. Here, the PRaMM model, a method for an improved quantification of metabolites, was developed, and a method to investigate the role of the MM background and its individual components from a clinical perspective is proposed.

为了提高在3t和7t时代谢物定量的可靠性,我们提出了一种新的脑1H MRS参数化大分子定量模型(PRaMM),其中大分子峰强度的比值作为软约束。在3 T和7 T时,从6名健康志愿者的大脑中获得了灰质和白质比例不同的三个不同区域的全谱和代谢物零谱。使用代谢物零谱来识别高度相关的大分子信号贡献并估计其强度的比率。然后将这些比率用作所提出的PRaMM模型的软约束,用于全光谱的量化。通过与单组分大分子模型和大分子减法技术的比较,验证了PRaMM模型的有效性。此外,还研究了PRaMM模型与其他方法相比对重现性和再现性的影响。开发的PRaMM模型在所有三个研究的大脑区域中都比其他两种方法表现更好。几种代谢物浓度估计值及其cram rs - rao下限受到PRaMM模型可重复性的影响,并通过在第二个重复采集数据集上评估该方法来测试所获得浓度的可重复性。虽然观察到的对两个指标的影响都不显著,但PRaMM方法的拟合质量指标得到了改善(p≤0.0001)。最小可检测到的变化在0.5-1.9 mM范围内,几乎所有临床相关代谢物的变化百分比系数都低于10%。此外,排除了潜在的过度参数化。本研究开发了一种改进的代谢物定量方法PRaMM模型,并提出了一种从临床角度研究MM背景及其单个成分作用的方法。
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引用次数: 0
Systems Engineering Approach Towards Sensitive Cellular Fluorine-19 MRI. 敏感细胞氟-19 MRI的系统工程方法。
IF 2.7 4区 医学 Q2 BIOPHYSICS Pub Date : 2025-01-01 DOI: 10.1002/nbm.5298
Jiawen Chen, Piya Pal, Eric T Ahrens

In vivo fluorine-19 MRI using F-based tracer media has shown utility and versatility for a wide range of biomedical uses, particularly immune and stem cell detection, as well as biosensing. As with many advanced MRI acquisition techniques, the sensitivity and limit of detection (LOD) in vivo is a key consideration for a successful study outcome. In this review, we analyze the primary factors that limit cell LOD. The achievable sensitivity is strongly dependent on the specific composition of tracer, cell type of interest, cell activity, data acquisition and reconstruction methods, and MRI hardware design. Recent innovations in molecular 19F tracer design and image acquisition-reconstruction methods have achieved significant leaps in 19F MRI sensitivity, and integration of these new materials and methods into studies can result in > 10-fold improvement in LOD. These developments will help unlock the full potential of clinical 19F MRI for biomedical applications.

使用 F 基示踪介质的体内氟-19 MRI 已显示出在广泛的生物医学用途上的实用性和多功能性,特别是在免疫和干细胞检测以及生物传感方面。与许多先进的核磁共振成像采集技术一样,体内的灵敏度和检测限(LOD)是取得成功研究结果的关键因素。在本综述中,我们分析了限制细胞 LOD 的主要因素。可达到的灵敏度在很大程度上取决于示踪剂的具体成分、感兴趣的细胞类型、细胞活性、数据采集和重建方法以及磁共振成像硬件设计。分子 19F 示踪剂设计和图像采集-重建方法的最新创新已使 19F MRI 的灵敏度大幅提高,将这些新材料和方法整合到研究中可使 LOD 提高 10 倍以上。这些发展将有助于释放临床 19F MRI 在生物医学应用中的全部潜力。
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引用次数: 0
Fractal dimension and lacunarity measures of glioma subcomponents are discriminative of the grade of gliomas and IDH status. 胶质瘤亚组分的分形维度和裂隙度量可区分胶质瘤的等级和 IDH 状态。
IF 2.7 4区 医学 Q2 BIOPHYSICS Pub Date : 2024-12-01 Epub Date: 2024-10-05 DOI: 10.1002/nbm.5272
Neha Yadav, Ankit Mohanty, Aswin V, Vivek Tiwari

Since the overall glioma mass and its subcomponents-enhancing region (malignant part of the tumor), non-enhancing (less aggressive tumor cells), necrotic core (dead cells), and edema (water deposition)-are complex and irregular structures, non-Euclidean geometric measures such as fractal dimension (FD or "fractality") and lacunarity are needed to quantify their structural complexity. Fractality measures the extent of structural irregularity, while lacunarity measures the spatial distribution or gaps. The complex geometric patterns of the glioma subcomponents may be closely associated with the grade and molecular landscape. Therefore, we measured FD and lacunarity in the glioma subcomponents and developed machine learning models to discriminate between tumor grades and isocitrate dehydrogenase (IDH) gene status. 3D fractal dimension (FD3D) and lacunarity (Lac3D) were measured for the enhancing, non-enhancing plus necrotic core, and edema-subcomponents using preoperative structural-MRI obtained from the The Cancer Genome Atlas (TCGA) and University of California San Francisco Preoperative Diffuse Glioma MRI (UCSF-PDGM) glioma cohorts. The FD3D and Lac3D measures of the tumor-subcomponents were then compared across glioma grades (HGGs: high-grade gliomas vs. LGGs: low-grade gliomas) and IDH status (mutant vs. wild type). Using these measures, machine learning platforms discriminative of glioma grade and IDH status were developed. Kaplan-Meier survival analysis was used to assess the prognostic significance of FD3D and Lac3D measurements. HGG exhibited significantly higher fractality and lower lacunarity in the enhancing subcomponent, along with lower fractality in the non-enhancing subcomponent compared to LGG. This suggests that a highly irregular and complex geometry in the enhancing-subcomponent is a characteristic feature of HGGs. A comparison of FD3D and Lac3D between IDH-wild type and IDH-mutant gliomas revealed that mutant gliomas had ~2.5-fold lower FD3D in the enhancing-subcomponent and higher FD3D with lower Lac3D in the non-enhancing subcomponent, indicating a less complex and smooth enhancing subcomponent, and a more continuous non-enhancing subcomponent as features of IDH-mutant gliomas. Supervised ML models using FD3D from both the enhancing and non-enhancing subcomponents together demonstrated high-sensitivity in discriminating glioma grades (~97.9%) and IDH status (~94.4%). A combined fractal estimation of the enhancing and non-enhancing subcomponents using MR images could serve as a non-invasive, precise, and quantitative measure for discriminating glioma grade and IDH status. The combination of 2-hydroxyglutarate-magnetic resonance spectroscopy (2HG-MRS) with FD3D and Lac3D quantification may be established as a robust imaging signature for glioma subtyping.

由于胶质瘤的整体肿块及其子部分--增强区(肿瘤的恶性部分)、非增强区(侵袭性较低的肿瘤细胞)、坏死核心(死细胞)和水肿(水沉积)--都是复杂而不规则的结构,因此需要分形维度(FD 或 "分形")和空隙度等非欧几里得几何测量方法来量化其结构的复杂性。分形度测量结构不规则的程度,而空白度测量空间分布或间隙。胶质瘤亚组分的复杂几何模式可能与分级和分子结构密切相关。因此,我们测量了胶质瘤亚组分的分形维度和空隙度,并开发了机器学习模型来区分肿瘤分级和异柠檬酸脱氢酶(IDH)基因状态。利用从癌症基因组图谱(TCGA)和加州大学旧金山分校术前弥漫性胶质瘤磁共振成像(UCSF-PDGM)胶质瘤队列中获得的术前结构磁共振成像,测量了增强、非增强加坏死核心和水肿亚组分的三维分形维度(FD3D)和裂隙度(Lac3D)。然后比较了不同胶质瘤等级(HGGs:高级别胶质瘤与 LGGs:低级别胶质瘤)和 IDH 状态(突变型与野生型)下肿瘤亚组分的 FD3D 和 Lac3D 测量值。利用这些指标,开发出了可区分胶质瘤等级和 IDH 状态的机器学习平台。Kaplan-Meier生存分析用于评估FD3D和Lac3D测量值的预后意义。与LGG相比,HGG在增强亚组分中表现出明显较高的断裂率和较低的裂隙度,而在非增强亚组分中则表现出较低的断裂率。这表明,增强子成分中高度不规则和复杂的几何形状是 HGG 的一个特征。对IDH野生型和IDH突变型胶质瘤的FD3D和Lac3D进行比较后发现,突变型胶质瘤增强亚组分的FD3D低2.5倍,而非增强亚组分的FD3D更高,Lac3D更低,这表明IDH突变型胶质瘤的特征是增强亚组分不那么复杂和光滑,而非增强亚组分更连续。使用增强和非增强子成分的 FD3D 一起建立的有监督 ML 模型在判别胶质瘤等级(约 97.9%)和 IDH 状态(约 94.4%)方面表现出较高的灵敏度。利用磁共振图像对增强和非增强子成分进行综合分形估算可作为一种非侵入性、精确和定量的方法来判别胶质瘤的分级和IDH状态。2-羟基戊二酸-磁共振波谱(2HG-MRS)与 FD3D 和 Lac3D 定量相结合,可作为胶质瘤亚型鉴定的可靠成像特征。
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引用次数: 0
Automatic pipeline for segmentation of LV myocardium on quantitative MR T1 maps using deep learning model and computation of radial T1 and ECV values. 使用深度学习模型在定量 MR T1 图上自动分割左心室心肌,并计算径向 T1 和 ECV 值。
IF 2.7 4区 医学 Q2 BIOPHYSICS Pub Date : 2024-12-01 Epub Date: 2024-08-04 DOI: 10.1002/nbm.5230
Raufiya Jafari, Ankit Kandpal, Radhakrishan Verma, Vinayak Aggarwal, Rakesh Kumar Gupta, Anup Singh

Native T1 mapping is a non-invasive technique used for early detection of diffused myocardial abnormalities, and it provides baseline tissue characterization. Post-contrast T1 mapping enhances tissue differentiation, enables extracellular volume (ECV) calculation, and improves myocardial viability assessment. Accurate and precise segmenting of the left ventricular (LV) myocardium on T1 maps is crucial for assessing myocardial tissue characteristics and diagnosing cardiovascular diseases (CVD). This study presents a deep learning (DL)-based pipeline for automatically segmenting LV myocardium on T1 maps and automatic computation of radial T1 and ECV values. The study employs a multicentric dataset consisting of retrospective multiparametric MRI data of 332 subjects to develop and assess the performance of the proposed method. The study compared DL architectures U-Net and Deep Res U-Net for LV myocardium segmentation, which achieved a dice similarity coefficient of 0.84 ± 0.43 and 0.85 ± 0.03, respectively. The dice similarity coefficients computed for radial sub-segmentation of the LV myocardium on basal, mid-cavity, and apical slices were 0.77 ± 0.21, 0.81 ± 0.17, and 0.61 ± 0.14, respectively. The t-test performed between ground truth vs. predicted values of native T1, post-contrast T1, and ECV showed no statistically significant difference (p > 0.05) for any of the radial sub-segments. The proposed DL method leverages the use of quantitative T1 maps for automatic LV myocardium segmentation and accurately computing radial T1 and ECV values, highlighting its potential for assisting radiologists in objective cardiac assessment and, hence, in CVD diagnostics.

原位 T1 映像是一种无创技术,用于早期检测弥漫性心肌异常,并提供基线组织特征。对比后 T1 映射可增强组织分化,计算细胞外容积 (ECV),并改善心肌活力评估。在T1图上准确、精确地分割左心室(LV)心肌对于评估心肌组织特征和诊断心血管疾病(CVD)至关重要。本研究提出了一种基于深度学习(DL)的管道,用于自动分割 T1 图上的左心室心肌,并自动计算径向 T1 值和 ECV 值。该研究采用了由 332 名受试者的回顾性多参数 MRI 数据组成的多中心数据集,以开发和评估所提出方法的性能。研究比较了用于左心室心肌分割的 DL 架构 U-Net 和 Deep Res U-Net,它们的骰子相似系数分别为 0.84 ± 0.43 和 0.85 ± 0.03。在基底、中腔和心尖切片上对左心室心肌进行径向细分计算得出的骰子相似系数分别为 0.77 ± 0.21、0.81 ± 0.17 和 0.61 ± 0.14。在原始 T1、对比后 T1 和 ECV 的地面真实值与预测值之间进行的 t 检验显示,任何径向亚节段都没有统计学意义上的显著差异(p > 0.05)。所提出的 DL 方法利用定量 T1 图自动分割左心室心肌并准确计算径向 T1 和 ECV 值,突出了其在协助放射科医生进行客观心脏评估,进而进行心血管疾病诊断方面的潜力。
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引用次数: 0
CEST effect of dimethyl sulfoxide at negative offset frequency. 负偏移频率下二甲基亚砜的 CEST 效应。
IF 2.7 4区 医学 Q2 BIOPHYSICS Pub Date : 2024-12-01 Epub Date: 2024-08-12 DOI: 10.1002/nbm.5238
Haoyun Su, Lok Hin Law, Yang Liu, Jianpan Huang, Kannie W Y Chan

Dimethyl sulfoxide (DMSO) has wide biomedical applications such as cryoprotectant and hydrophobic drug carrier. Here, we report for the first time that DMSO can generate a distinctive chemical exchange saturation transfer (CEST) signal at around -2 ppm. Structural analogs of DMSO, including aprotic and protic solvents, also demonstrated CEST signals from -1.4 to -3.8 ppm. When CEST detectable barbituric acid (BA) was dissolved in DMSO solution and was co-loaded to liposome, two obvious peaks at 5 and -2 ppm were observed, indicating that DMSO and related solvent system can be monitored in a label-free manner via CEST, which can be further applied to imaging drug nanocarriers. With reference to previous studies, there could be molecular interactions or magnetization transfer pathways, such as the relayed nuclear Overhauser enhancement (rNOE), that lead to this detectable CEST contrast at negative offset frequencies of the Z-spectrum. Our findings suggest that small molecules of organic solvents could be involved in magnetization transfer processes with water and readily detected by CEST magnetic resonance imaging (MRI), providing a new avenue for detecting solvent-water and solvent-drug interactions.

二甲基亚砜(DMSO)具有广泛的生物医学用途,如低温保护剂和疏水性药物载体。在这里,我们首次报告了二甲基亚砜能在-2 ppm左右产生独特的化学交换饱和转移(CEST)信号。二甲基亚砜的结构类似物,包括烷基和质基溶剂,也显示出 -1.4 至 -3.8 ppm 的 CEST 信号。当 CEST 检测巴比妥酸(BA)溶于二甲基亚砜溶液并共同负载到脂质体中时,在 5 和 -2 ppm 处观察到两个明显的峰,这表明二甲基亚砜及相关溶剂系统可通过 CEST 以无标记的方式进行监测,并可进一步应用于药物纳米载体的成像。参考之前的研究,可能存在分子相互作用或磁化传递途径,如中继核奥弗霍瑟增强(rNOE),从而导致在 Z 光谱的负偏移频率上出现这种可检测到的 CEST 对比。我们的研究结果表明,有机溶剂的小分子可能参与了与水的磁化传递过程,并很容易被 CEST 磁共振成像 (MRI) 检测到,这为检测溶剂-水和溶剂-药物相互作用提供了一条新途径。
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引用次数: 0
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NMR in Biomedicine
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