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A two-branch framework for blood pressure estimation using photoplethysmography signals with deep learning and clinical prior physiological knowledge.
IF 2.3 4区 医学 Q3 BIOPHYSICS Pub Date : 2025-02-07 DOI: 10.1088/1361-6579/adae50
Minghong Qiao, Li Chang, Zili Zhou, Sam Cheng Jun, Ling He, Jing Zhang

Objective.This paper presents a novel dual-branch framework for estimating blood pressure (BP) using photoplethysmography (PPG) signals. The method combines deep learning with clinical prior knowledge and models different time periods (morning, afternoon, and evening) to achieve precise, cuffless BP estimation.Approach.Preprocessed single-channel PPG signals are input into two feature extraction branches. The first branch converts PPG dimensions to 2D and uses pre-trained Mobile Vision Transformer-v2 (MobileViTv2) and Visual Geometry Group19 (Vgg19) backbones to extract deep PPG features based on the different mechanisms of systolic blood pressure (SBP) and diastolic blood pressure (DBP) formation. The second branch calculates multi-dimensional feature parameters based on the relationship between PPG waveforms and factors affecting BP. We fuse the features from both branches and consider diurnal BP variations, using AutoML strategy to construct specific SBP and DBP estimation models for the different periods. The algorithm was developed on the human resting state PPG and BP dataset (HRSD) and validated on the MIMIC-IV dataset for generalization performance.Main results.The mean absolute error (MAE) for BP estimation is 6.42 mmHg SBP and 4.96 mmHg DBP in the morning, 4.84 mmHg (SBP) and 3.73 mmHg (DBP) in the afternoon, and 2.65 mmHg (SBP) and 2.56 mmHg (DBP) in the evening. Performance on the MIMIC-IV database was 4.34 mmHg (SBP) and 3.11 mmHg (DBP). The method meets the standards of the Association for the Advancement of Medical Instrumentation and achieves Grade A of the British Hypertension Society (BHS) standards.Significance. This indicates that it is an accurate and reliable non-invasive BP monitoring technology, applicable for continuous health monitoring and cardiovascular disease prevention.

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引用次数: 0
A low-cost PPG sensor-based empirical study on healthy aging based on changes in PPG morphology. 基于PPG形态学变化的低成本PPG传感器健康衰老实证研究
IF 2.3 4区 医学 Q3 BIOPHYSICS Pub Date : 2025-02-07 DOI: 10.1088/1361-6579/ada246
Muhammad Saran Khalid, Ikramah Shahid Quraishi, Muhammad Wasim Nawaz, Hadia Sajjad, Hira Yaseen, Ahsan Mehmood, M Mahboob Ur Rahman, Qammer H Abbasi

Objective. We study the changes in morphology of the photoplethysmography (PPG) signals-acquired from a select group of South Asian origin-through a low-cost PPG sensor, and correlate it with healthy aging which allows us to reliably estimate the vascular age and chronological age of a healthy person as well as the age group he/she belongs to.Approach. Raw infrared PPG data is collected from the finger-tip of 173 apparently healthy subjects, aged 3-61 years, via a non-invasive low-cost MAX30102 PPG sensor. In addition, the following metadata is recorded for each subject: age, gender, height, weight, family history of cardiac disease, smoking history, vitals (heart rate and SpO2). The raw PPG data is conditioned and 62 features are then extracted based upon the first four PPG derivatives. Then, correlation-based feature-ranking is performed which retains 26 most important features. Finally, the feature set is fed to three machine learning classifiers, i.e. logistic regression, random forest, eXtreme Gradient Boosting (XGBoost), and two shallow neural networks: a feedforward neural network and a convolutional neural network.Main results. For the age group classification problem, the ensemble method XGboost stands out with an accuracy of 99% for both binary classification (3-20 years vs. 20+ years) and three-class classification (3-18 years, 18-23 years, 23+ years). For the vascular/chronological age prediction problem, the ensemble random forest method stands out with a mean absolute error of 6.97 years.Significance. The results demonstrate that PPG is indeed a promising (i.e. low-cost, non-invasive) biomarker to study the healthy aging phenomenon.

目的:通过一种低成本的PPG传感器,我们研究了南亚人的光容积脉搏波(PPG)信号形态的变化,并将其与健康衰老相关联,从而使我们能够可靠地估计健康人群的血管年龄和实足年龄以及他/她所属的年龄组。方法:采用无创低成本MAX30102 PPG传感器采集173例3 ~ 61岁表面健康受试者的指尖PPG原始红外数据。此外,还记录每位受试者的以下元数据:年龄、性别、身高、体重、心脏病家族史、吸烟史、生命体征(心率和SpO2)。对原始PPG数据进行条件处理,然后根据前四个PPG衍生物提取62个特征。然后,进行基于相关性的特征排序,保留26个最重要的特征。最后,将特征集馈送到三个机器学习(ML)分类器,即逻辑回归、随机森林、极端梯度增强(XGBoost)和两个浅层神经网络:前馈神经网络(FFNN)和卷积神经网络(CNN)。主要结果:对于年龄组分类问题,集成方法XGboost在二分类(3-20岁vs. 20+岁)和三分类(3-18岁、18-23岁、23+岁)中均以99%的准确率脱颖而出。对于血管/实足年龄预测问题,集合随机森林方法的平均绝对误差(MAE)为6.97年。意义:结果表明PPG确实是一种有前景的(即低成本,无创的)生物标志物来研究健康衰老现象。
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引用次数: 0
LumEDA: image luminance based contactless correlates of electrodermal responses.
IF 2.3 4区 医学 Q3 BIOPHYSICS Pub Date : 2025-02-06 DOI: 10.1088/1361-6579/adb369
Mayur Bhamborae, Elena Nadja Schneider, Philipp Flotho, Alexander Francis, Daniel J Strauss

Electrodermal activity (EDA) is a marker of psychophysiological arousal and is usually a measure of the skin conductance which is associated with sweat gland activity. Recent studies have shown that it is possible to estimate the EDA using contactless video based methods.

Approach: EDA signals (SenEDA) and videos of the the palm were recorded simultaneously from 40 participants under various stimuli (audio, video, cognitive and physiological). The luminance information from the video data was used to track sweat gland activity on the skin surface and extract the contactless signal (LumEDA).

Main results: Comparison of the SenEDA and LumEDA signals showed a high positive correlation between the two as expected.

Significance: Under suitable illumination, simple spatial filters can be used to track sweat gland activity which can then be used to estimate signals analogous to the EDA. Such video based methods also facilitate spatiotemporal analysis of EDA correlates over larger areas of the body.

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引用次数: 0
Automated system for diagnosing pulmonary fibrosis using crackle analysis in recorded lung sounds based on iterative envelope mean fractal dimension filter. 基于迭代包络平均分形维数滤波的肺音裂纹分析自动诊断系统。
IF 2.3 4区 医学 Q3 BIOPHYSICS Pub Date : 2025-02-06 DOI: 10.1088/1361-6579/ada9c0
Ravi Pal, Anna Barney, Giacomo Sgalla, Simon L F Walsh, Nicola Sverzellati, Sophie Fletcher, Stefania Cerri, Maxime Cannesson, Luca Richeldi

Objective.Patients with pulmonary fibrosis (PF) often experience long waits before getting a correct diagnosis, and this delay in reaching specialized care is associated with increased mortality, regardless of the severity of the disease. Early diagnosis and timely treatment of PF can potentially extend life expectancy and maintain a better quality of life. Crackles present in the recorded lung sounds may be crucial for the early diagnosis of PF.Approach.This paper describes an automated system for differentiating lung sounds related to PF from other pathological lung conditions using the average number of crackles per breath cycle (NOC/BC). The system is divided into four main parts: (1) pre-processing, (2) separation of crackles from normal breath sounds using the iterative envelope mean fractal dimension filter, (3) crackle verification and counting, and (4) estimating NOC/BC. The system was tested on a dataset consisting of 48 (24 fibrotic and 24 non-fibrotic) subjects and the results were compared with an assessment by two expert respiratory physicians. The set of high-resolution computed tomography images, reviewed by two expert radiologists for the presence or absence of PF, was used as the ground truth for evaluating the PF and non-PF classification performance of the system.Main results.The overall performance of the automatic classifier based on receiver operating curve-derived cut-off value for average NOC/BC of 18.65 (AUC = 0.845, 95% CI 0.739-0.952,p< 0.001; sensitivity = 91.7%; specificity = 59.3%) compares favourably with the averaged performance of the physicians (sensitivity = 83.3%; specificity = 56.25%).Significance.Although radiological assessment should remain the gold standard for diagnosis of fibrotic interstitial lung disease (ILD), the automatic classification system has strong potential for diagnostic support, especially in assisting general practitioners in the auscultatory assessment of lung sounds to prompt further diagnostic work up of patients with suspect of ILD.

肺纤维化(PF)患者在得到正确诊断之前往往要等待很长时间,而无论疾病的严重程度如何,这种获得专业护理的延迟与死亡率增加有关。PF的早期诊断和及时治疗可以潜在地延长预期寿命并保持更好的生活质量。记录的肺音中出现的裂纹可能对PF的早期诊断至关重要。本文描述了一种自动化系统,该系统使用每个呼吸周期的平均裂纹数(NOC/BC)来区分与PF相关的肺音和其他病理肺部疾病。该系统分为四个主要部分:(1)预处理,(2)使用迭代包络平均分形维数(IEM-FD)滤波器从正常呼吸声中分离裂纹,(3)裂纹验证和计数,(4)估计NOC/BC。该系统在一个由48名受试者(24名纤维化和24名非纤维化)组成的数据集上进行了测试,并将结果与两位呼吸内科专家的评估进行了比较。HRCT图像集由两名放射科专家审查是否存在肺纤维化,作为评估系统的PF和非PF分类性能的基本事实。基于接收者工作曲线衍生的截止值的自动分类器的总体性能为平均NOC/BC为18.65 (AUC=0.845, 95% CI 0.739-0.952, p
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引用次数: 0
One-week test-retest stability of heart rate variability during rest and deep breathing.
IF 2.3 4区 医学 Q3 BIOPHYSICS Pub Date : 2025-02-06 DOI: 10.1088/1361-6579/adae51
Andy Schumann, Franziska Lukas, Katrin Rieger, Yubraj Gupta, Karl-Jürgen Bär

Objective. Heart rate variability (HRV) is an important indicator of cardiac autonomic function. Given its clinical significance, reliable HRV assessment is crucial. Here, we assessed test-retest stability, as a key aspect of reliability, quantifying the consistency of a measure when repeated under the same conditions.Approach. This observational study includes healthy individuals. A 20 min electrocardiogram was recorded at rest in a supine position and during deep breathing in two lab sessions within one week, at the same time of day. HRV indices from time domain, frequency domain, nonlinear dynamics, and information-theoretic complexity were assessed using a validated toolbox. Additionally, heart rate variations per respiratory cycle were evaluated during deep breathing. Lifestyle factors such as perceived stress, mood, physical activity, sleep quality were assessed prior to both sessions. Intra-class correlation (ICC) and coefficients of variation (CVs) were used to assess the concordance between the two measurements and the relative deviation, respectively.Main results. From 62 screened individuals, 51 participants were recruited from the local community. One participant opted out for personal reasons, and another with frequent premature beats was excluded, leaving a final sample of 49 individuals. Most self-rated psychological and lifestyle indicators showed substantial agreement, though participants reported less stress and better mood in the second session. At rest, ICC of HRV ranged from 0.50 to 0.83, with CV from 5% to 41%. Spectral HRV measures were less reliable than time domain parameters. Nonlinear and time domain features had substantial to nearly perfect agreement. Complexity measures had low CVs but limited test-retest correlation. The stability indices of HRV during deep breathing were not significantly different from those during rest. Test-retest differences in root mean square of the successive beat-to-beat interval difference were not sufficiently explained by lifestyle factors.Significance.Test-retest stability of HRV depends considerably on chosen measures. Our data suggest that HRV can be assessed reliably using time-domain indices at rest.

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引用次数: 0
Rotating radial injection pattern for highly sensitive electrical impedance tomography of human lung anomalies. 旋转径向注射模式对人体肺部异常的高灵敏度电阻抗断层扫描。
IF 2.3 4区 医学 Q3 BIOPHYSICS Pub Date : 2025-02-06 DOI: 10.1088/1361-6579/ada9c2
Oumaima Bader, Najoua Essoukri Ben Amara, Oliver G Ernst, Olfa Kanoun

Objective.Electrical impedance tomography (EIT) is a non-invasive technique used for lung imaging. A significant challenge in EIT is reconstructing images of deeper thoracic regions due to the low sensitivity of boundary voltages to internal conductivity variations. The current injection pattern is decisive as it influences the current path, boundary voltages, and their sensitivity to tissue changes.Approach.This study introduces a novel current injection pattern with radially placed electrodes excited in a rotating radial pattern. The effectiveness of the proposed pattern was investigated using a 3D computational model that mimics the human thorax, replicating its geometry and tissue electrical properties. To examine the detection of lung anomalies, models representing both healthy and unhealthy states, including cancer-like anomalies in three different positions, were developed. The new pattern was compared to common patterns-adjacent, skip 1, and opposite-using finite element analysis. The comparison focused on the current density within lung nodules and the sensitivity to changes in anomaly positions.Main results.Results showed that the new pattern achieved the maximum current density within anomalies compared to surrounding tissues, with peak values near the closest electrode pairs to the anomalies. Specifically, current density magnitudes reached72.73⋅10-9A⋅m,145.24⋅10-9A⋅m, and26.43⋅10-9A⋅mfor the three different positions, respectively. Furthermore, the novel pattern's sensitivity to anomaly position changes surpassed the common patterns.Significance.These results demonstrate the efficiency of the proposed injection pattern in detecting lung anomalies compared to the common injection patterns.

目的:电阻抗断层扫描(EIT)是一种用于肺部成像的无创技术。由于边界电压对内部电导率变化的敏感性较低,EIT的一个重大挑战是重建胸部较深区域的图像。电流注入模式是决定性的,因为它影响电流路径、边界电压及其对组织变化的敏感性。& # xD;方法。本文介绍了一种新的电流注入模式,该模式采用径向放置的电极在旋转的径向模式下进行激励。利用模拟人类胸腔的三维计算模型研究了所提出模式的有效性,复制了其几何形状和组织电学特性。为了检查肺部异常的检测,建立了代表健康和不健康状态的模型,包括三个不同位置的癌症样异常。 ;使用有限元分析(FEA)将新模式与常见模式-相邻,跳过1和相对模式进行比较。比较的重点是肺结节内的电流密度和对异常位置变化的敏感性。& # xD;主要结果。结果表明,与周围组织相比,新模式在异常中获得了最大的电流密度,峰值在离异常最近的电极对附近。具体而言,三个位置的电流密度量级分别为72.73 10^{-9}a.m.、145.24 10^{-9}a.m.和26.43 10^{-9}a.m.。此外,该模式对异常位置变化的敏感性优于普通模式。意义:与普通注射模式相比,这些结果证明了所提出的注射模式在检测肺部异常方面的效率。
{"title":"Rotating radial injection pattern for highly sensitive electrical impedance tomography of human lung anomalies.","authors":"Oumaima Bader, Najoua Essoukri Ben Amara, Oliver G Ernst, Olfa Kanoun","doi":"10.1088/1361-6579/ada9c2","DOIUrl":"10.1088/1361-6579/ada9c2","url":null,"abstract":"<p><p><i>Objective.</i>Electrical impedance tomography (EIT) is a non-invasive technique used for lung imaging. A significant challenge in EIT is reconstructing images of deeper thoracic regions due to the low sensitivity of boundary voltages to internal conductivity variations. The current injection pattern is decisive as it influences the current path, boundary voltages, and their sensitivity to tissue changes.<i>Approach.</i>This study introduces a novel current injection pattern with radially placed electrodes excited in a rotating radial pattern. The effectiveness of the proposed pattern was investigated using a 3D computational model that mimics the human thorax, replicating its geometry and tissue electrical properties. To examine the detection of lung anomalies, models representing both healthy and unhealthy states, including cancer-like anomalies in three different positions, were developed. The new pattern was compared to common patterns-adjacent, skip 1, and opposite-using finite element analysis. The comparison focused on the current density within lung nodules and the sensitivity to changes in anomaly positions.<i>Main results.</i>Results showed that the new pattern achieved the maximum current density within anomalies compared to surrounding tissues, with peak values near the closest electrode pairs to the anomalies. Specifically, current density magnitudes reached72.73⋅10-9A⋅m,145.24⋅10-9A⋅m, and26.43⋅10-9A⋅mfor the three different positions, respectively. Furthermore, the novel pattern's sensitivity to anomaly position changes surpassed the common patterns.<i>Significance.</i>These results demonstrate the efficiency of the proposed injection pattern in detecting lung anomalies compared to the common injection patterns.</p>","PeriodicalId":20047,"journal":{"name":"Physiological measurement","volume":" ","pages":""},"PeriodicalIF":2.3,"publicationDate":"2025-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143009921","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The regional ventilation distribution monitored by electrical impedance tomography during anesthesia induction with head-rotated mask ventilation.
IF 2.3 4区 医学 Q3 BIOPHYSICS Pub Date : 2025-01-31 DOI: 10.1088/1361-6579/adad2f
Qing Xu, Yijiao Fang, Congxia Pan, Lingling Gao, Yun Zhu, Jun Zhang, Zhanqi Zhao, Li Yang

Objective.Abnormal regional lung ventilation can lead to undesirable outcomes during the induction of anesthesia. Head rotated ventilation has proven to change the airflow of upper airway tract and be effective in increasing the tidal volume. This study aimed to investigate the influence of head rotated mask ventilation on regional ventilation distribution during the induction phase of anesthesia.Approach.Ninety patients undergoing anesthesia induction were randomly assigned to receive either neutral head (neutral-head group) or rotated right side head (rotated-head group) mask ventilation. Pressure-controlled mode was used in all mechanical ventilation. The regional lung ventilation was monitored by electrical impedance tomography. The primary outcome was the ratio of left/right lung ventilation distribution. The secondary outcomes were global inhomogeneity index (GI), center of ventilation (CoV, 100% = entirely dorsal), and the regional lung distribution differences between spontaneous and mask ventilation.Main results.Forty-two patients with neutral-head and 38 with rotated-head mask ventilation were analyzed finally. Compared with spontaneous ventilation, mask positive-pressure ventilation caused significant changes in the ratio of left/right lung ventilation distribution [0.85 (0.27) versus 0.94 (0.30);P= 0.022]. However, there were no differences in the ratio of left/right lung ventilation distribution between neutral and rotated head groups (P= 0.128). When compared with spontaneous ventilation, mask ventilation caused regional distributions of ventilation shifts towards ventral lung areas (CoV: 45.7 ± 5.0% versus 39.2 ± 4.8%;P< 0.001), and significant lung ventilation inhomogeneity (GI: 0.40 ± 0.07 versus 0.49 ± 0.14;P< 0.001). Compared with neutral-head mask ventilation, rotated-head mask ventilation was associated with higher expiratory tidal volume (TVe) (575.1 ± 148.6 ml versus 654.2 ± 204.0 ml;P= 0.049).Significance.Mask positive ventilation caused regional lung ventilation changes. When compared with neutral-head mask ventilation, rotated-head mask ventilation did not improve the regional ventilation towards to left lung. However, rotated-head mask ventilation was associated with higher TVe, and has the potential for better oxygenation.Trial Registration.This study was registered on Chinese Clinical Trial Registry on 6 August, 2024 (ChiCTR2400087858).

{"title":"The regional ventilation distribution monitored by electrical impedance tomography during anesthesia induction with head-rotated mask ventilation.","authors":"Qing Xu, Yijiao Fang, Congxia Pan, Lingling Gao, Yun Zhu, Jun Zhang, Zhanqi Zhao, Li Yang","doi":"10.1088/1361-6579/adad2f","DOIUrl":"10.1088/1361-6579/adad2f","url":null,"abstract":"<p><p><i>Objective.</i>Abnormal regional lung ventilation can lead to undesirable outcomes during the induction of anesthesia. Head rotated ventilation has proven to change the airflow of upper airway tract and be effective in increasing the tidal volume. This study aimed to investigate the influence of head rotated mask ventilation on regional ventilation distribution during the induction phase of anesthesia.<i>Approach.</i>Ninety patients undergoing anesthesia induction were randomly assigned to receive either neutral head (neutral-head group) or rotated right side head (rotated-head group) mask ventilation. Pressure-controlled mode was used in all mechanical ventilation. The regional lung ventilation was monitored by electrical impedance tomography. The primary outcome was the ratio of left/right lung ventilation distribution. The secondary outcomes were global inhomogeneity index (GI), center of ventilation (CoV, 100% = entirely dorsal), and the regional lung distribution differences between spontaneous and mask ventilation.<i>Main results.</i>Forty-two patients with neutral-head and 38 with rotated-head mask ventilation were analyzed finally. Compared with spontaneous ventilation, mask positive-pressure ventilation caused significant changes in the ratio of left/right lung ventilation distribution [0.85 (0.27) versus 0.94 (0.30);<i>P</i>= 0.022]. However, there were no differences in the ratio of left/right lung ventilation distribution between neutral and rotated head groups (<i>P</i>= 0.128). When compared with spontaneous ventilation, mask ventilation caused regional distributions of ventilation shifts towards ventral lung areas (CoV: 45.7 ± 5.0% versus 39.2 ± 4.8%;<i>P</i>< 0.001), and significant lung ventilation inhomogeneity (GI: 0.40 ± 0.07 versus 0.49 ± 0.14;<i>P</i>< 0.001). Compared with neutral-head mask ventilation, rotated-head mask ventilation was associated with higher expiratory tidal volume (TVe) (575.1 ± 148.6 ml versus 654.2 ± 204.0 ml;<i>P</i>= 0.049).<i>Significance.</i>Mask positive ventilation caused regional lung ventilation changes. When compared with neutral-head mask ventilation, rotated-head mask ventilation did not improve the regional ventilation towards to left lung. However, rotated-head mask ventilation was associated with higher TVe, and has the potential for better oxygenation.<b>Trial Registration.</b>This study was registered on Chinese Clinical Trial Registry on 6 August, 2024 (ChiCTR2400087858).</p>","PeriodicalId":20047,"journal":{"name":"Physiological measurement","volume":" ","pages":""},"PeriodicalIF":2.3,"publicationDate":"2025-01-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143024507","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The UNICA sleep HRV analysis tool: an integrated open-source tool for heart rate variability analysis during sleep. UNICA睡眠HRV分析工具:一个集成的开源工具,用于分析睡眠期间的心率变异性。
IF 2.3 4区 医学 Q3 BIOPHYSICS Pub Date : 2025-01-30 DOI: 10.1088/1361-6579/adaad5
Parisa Sattar, Giulia Baldazzi, Monica Puligheddu, Danilo Pani

Heart rate variability (HRV) analysis during sleep plays a key role for understanding autonomic nervous system function and assessing cardiovascular health. The UNICA Sleep HRV analysis (UNICA-HRV) tool is a novel, open-source MATLAB tool designed to fill the gap in current HRV analysis tools. In particular, the integration of ECG and HRV data with hypnogram information, which illustrates the progression through the different sleep stages, eases the computation of HRV metrics in polysomnographic recordings. This integration is crucial for accurate phase-specific analysis, as autonomic regulation changes markedly across different sleep stages. The tool supports single- and multiple-subject analyses and is tailored to enhance usability and accessibility for researchers and clinicians without requiring extensive technical expertise. It implements and supports a variety of data inputs and configurations, allowing for flexible, detailed HRV analyses across sleep stages, employing classical and advanced metrics, such as time-domain, frequency-domain, non-linear, complexity, and Poincaré plot indexes. Validation of the tool against established tools like Kubios and PhysioZoo indicates its robustness and precision in generating reliable HRV metrics, that are essential not only for sleep research, but also for clinical diagnostics. The introduction of UNICA-HRV represents a significant simplification for sleep studies, and its open-source nature (licensed under a Creative Commons Attribution 4.0 International License) allows to easily extend the functionality to other needs.

睡眠时心率变异性(HRV)分析对了解自主神经系统功能和评估心血管健康起着关键作用。UNICA睡眠HRV分析(UNICA-HRV)工具是一种新颖的开源MATLAB工具,旨在填补当前HRV分析工具的空白。特别是,将ECG和HRV数据与催眠图信息相结合,可以说明不同睡眠阶段的进展,从而简化了多导睡眠图记录中HRV指标的计算。这种整合对于准确的特定阶段分析至关重要,因为自主调节在不同的睡眠阶段发生显著变化。该工具支持单主题和多主题分析,并为研究人员和临床医生量身定制,以提高可用性和可访问性,而无需广泛的技术专业知识。它实现并支持各种数据输入和配置,允许跨睡眠阶段灵活、详细的HRV分析,采用经典和先进的指标,如时域、频域、非线性、复杂性和poincar图索引。与Kubios和PhysioZoo等已建立的工具进行的验证表明,该工具在生成可靠的HRV指标方面具有稳健性和精确性,这不仅对睡眠研究至关重要,而且对临床诊断也至关重要。UNICA-HRV的引入代表了睡眠研究的重大简化,其开源性质(根据知识共享署名4.0国际许可许可)允许轻松扩展功能以满足其他需求。
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引用次数: 0
ECG signal generation using feature disentanglement auto-encoder. 利用特征解纠缠自编码器生成心电信号。
IF 2.3 4区 医学 Q3 BIOPHYSICS Pub Date : 2025-01-30 DOI: 10.1088/1361-6579/adab4f
Hanbin Xiao, Yong Xia

Objective.The demand for electrocardiogram (ECG) datasets, particularly those containing rare classes, poses a significant challenge as deep learning becomes increasingly prevalent in ECG signal research. While generative adversarial networks (GANs) and variational autoencoders (VAEs) are widely adopted, they encounter difficulties in effectively generating samples for classes with limited instances.Approach.To address this issue, we propose a novelFeatureDisentanglement Auto-Encoder (FDAE) designed to dissect various generative factors under a contrastive learning framework within ECG data to facilitate the generation of new ECG samples. The FDAE enhances and extends the AE structure with novel methodologies, which involve: (1) partitioning the latent space into three distinct representations to capture various generative factors; (2) utilizing a contrastive loss function to improve feature disentanglement capabilities; and (3) incorporating additional classifiers to enhance representation learning, alongside a discriminator aimed at boosting the realism of synthesized signals. Furthermore, our FDAE generates new signals by swapping latent codes of existing signals and combining freely or substituting patient-independent representations with those randomly generated by a VAE.Main results.To validate our approach, we conduct heartbeat classification experiments on the publicly available MIT-BIH arrhythmia database, using FAKE-train/FAKE-test partitions and data augmentation. The results highlight the FDAE's ability to improve ECG classifier performance and excel in synthesizing ECG signals. Furthermore, we apply the model to the Icentia11K dataset and conducted classification enhancement experiments. The results further highlight the model's strong generalization ability in ECG synthesis.Significance.This work has the potential to improve the robustness and generalization of deep learning models for ECG analysis, particularly in medical applications where rare cardiac events are often underrepresented in available datasets.

目的:随着深度学习在心电信号研究中的日益普及,对心电数据集的需求,特别是那些包含稀有类的数据集的需求提出了重大挑战。虽然生成对抗网络(GANs)和变分自编码器(VAEs)被广泛采用,但它们在有效生成具有有限实例的类的样本方面遇到了困难。方法:为了解决这个问题,我们提出了一种新的特征解缠自编码器(FDAE),旨在在心电数据的对比学习框架下剖析各种生成因素,以促进新的心电样本的生成。FDAE采用新的方法增强和扩展声发射结构,包括:(1)将潜在空间划分为三个不同的表示,以捕获各种生成因素;(2)利用对比损失函数提高特征解纠缠能力;(3)结合额外的分类器来增强表征学习,以及旨在提高合成信号真实感的鉴别器。此外,我们的FDAE通过交换现有信号的潜在代码并将与患者无关的表示与VAE随机生成的表示自由组合或替换来生成新信号。为了验证我们的方法,我们在公开可用的MIT-BIH心律失常数据库上进行了心跳分类实验,使用FAKE-train/FAKE-test分区和数据增强。结果表明,FDAE能够提高心电分类器的性能,在心电信号合成方面具有优势。将该模型应用于Icentia11K数据集,并进行分类增强实验。结果进一步突出了该模型在心电综合中较强的泛化能力。意义:这项工作有可能提高ECG分析的深度学习模型的鲁棒性和泛化,特别是在医疗应用中,罕见的心脏事件在可用数据集中往往代表性不足。
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引用次数: 0
Diagnosing anaemia via smartphone colorimetry of the eye in a population of pregnant women. 通过智能手机比色法对孕妇进行贫血诊断。
IF 2.3 4区 医学 Q3 BIOPHYSICS Pub Date : 2025-01-29 DOI: 10.1088/1361-6579/adab4d
Thomas Alan Wemyss, Anubhuti Rana, Sara L Hillman, Miranda Nixon-Hill, Kapil Yadav, Vatsla Dadhwal, Terence S Leung

Objective.Screening for disease using a smartphone camera is an emerging tool for conditions such as jaundice and anaemia, which are associated with a colour change (yellowing in jaundice; pallor in anaemia) of the external tissues. Based on this, we aimed to test a technique to non-invasively screen for anaemia in a population highly affected by anaemia: pregnant women in India. In this group, anaemia can have severe health consequences for both the mother and child.Approach.Over 3 years of data collection, in 486 pregnant women in India, we attempted to replicate a previously successful smartphone imaging technique to screen for anaemia. Using smartphone images of the eye and eyelid, we compared two techniques (white balancing and ambient subtraction) to control for variation in ambient lighting, and then extracted 'redness' features from images, which we used as features to predict anaemia via statistical modelling.Main results.We found that we were not able to predict anaemia with enough accuracy to be clinically useful, at 89.6% sensitivity and 26.1% specificity. We consider the hypothesis that this may be due to pigmentation on the sclera and palpebral conjunctiva. Visual judgement showed that pigmentation on the sclera, which may affect the measured colour, is more prevalent in pregnant women in India than in preschool aged children in Ghana (a population previously studied in this context). When participants with subjectively judged visible scleral pigmentation are removed, ability to screen for anaemia using the smartphone images slightly improves (93.1% sensitivity, 28.6% specificity).Significance.These findings provide evidence to reinforce that applying smartphone imaging techniques to understudied populations in the real world requires caution-a promising result in one group may not necessarily transfer to another demographic.

目的 ;使用智能手机摄像头进行疾病筛查是黄疸和贫血等疾病的新兴工具,这些疾病与颜色变化(黄疸变黄;(贫血时的苍白)外部组织。在此基础上,我们的目标是测试一种无创筛查贫血的技术,在贫血严重影响的人群中:印度的孕妇。在这一组中,贫血可能对母亲和孩子都有严重的健康后果。 ;方法 ;在3年的数据收集中,在印度的486名孕妇中,我们试图复制以前成功的智能手机成像技术来筛查贫血。使用智能手机的眼睛和眼睑图像,我们比较了两种技术(白平衡和环境减相法)来控制环境光照的变化,然后从图像中提取“红色”特征,我们将其用作通过统计建模预测贫血的特征。主要结果我们发现,我们无法以足够的准确性预测贫血,在临床上有用,敏感性为89.6%,特异性为26.1%。我们认为这可能是由于巩膜和眼睑结膜上的色素沉着。视觉判断显示,可能影响测量颜色的巩膜色素沉着在印度孕妇中比在加纳的学龄前儿童中更为普遍(之前在此背景下研究过的人群)。当主观判断可见巩膜色素沉着的参与者被移除时,使用智能手机图像筛查贫血的能力略有提高(93.1%的敏感性,28.6%的特异性)。这些发现提供的证据强化了将智能手机成像技术应用于现实世界中未充分研究的人群需要谨慎-一个群体的有希望的结果可能不一定转移到另一个人群。
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Physiological measurement
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