Pub Date : 2024-04-17DOI: 10.1088/1361-6579/ad37ee
Cheng Ding, Ran Xiao, Weijia Wang, Elizabeth Holdsworth, Xiao Hu
Objective. Atrial fibrillation (AF) is a prevalent cardiac arrhythmia associated with significant health ramifications, including an elevated susceptibility to ischemic stroke, heart disease, and heightened mortality. Photoplethysmography (PPG) has emerged as a promising technology for continuous AF monitoring for its cost-effectiveness and widespread integration into wearable devices. Our team previously conducted an exhaustive review on PPG-based AF detection before June 2019. However, since then, more advanced technologies have emerged in this field.Approach. This paper offers a comprehensive review of the latest advancements in PPG-based AF detection, utilizing digital health and artificial intelligence (AI) solutions, within the timeframe spanning from July 2019 to December 2022. Through extensive exploration of scientific databases, we have identified 57 pertinent studies.Significance. Our comprehensive review encompasses an in-depth assessment of the statistical methodologies, traditional machine learning techniques, and deep learning approaches employed in these studies. In addition, we address the challenges encountered in the domain of PPG-based AF detection. Furthermore, we maintain a dedicated website to curate the latest research in this area, with regular updates on a regular basis.
{"title":"Photoplethysmography based atrial fibrillation detection: a continually growing field.","authors":"Cheng Ding, Ran Xiao, Weijia Wang, Elizabeth Holdsworth, Xiao Hu","doi":"10.1088/1361-6579/ad37ee","DOIUrl":"10.1088/1361-6579/ad37ee","url":null,"abstract":"<p><p><i>Objective.</i> Atrial fibrillation (AF) is a prevalent cardiac arrhythmia associated with significant health ramifications, including an elevated susceptibility to ischemic stroke, heart disease, and heightened mortality. Photoplethysmography (PPG) has emerged as a promising technology for continuous AF monitoring for its cost-effectiveness and widespread integration into wearable devices. Our team previously conducted an exhaustive review on PPG-based AF detection before June 2019. However, since then, more advanced technologies have emerged in this field.<i>Approach.</i> This paper offers a comprehensive review of the latest advancements in PPG-based AF detection, utilizing digital health and artificial intelligence (AI) solutions, within the timeframe spanning from July 2019 to December 2022. Through extensive exploration of scientific databases, we have identified 57 pertinent studies.<i>Significance.</i> Our comprehensive review encompasses an in-depth assessment of the statistical methodologies, traditional machine learning techniques, and deep learning approaches employed in these studies. In addition, we address the challenges encountered in the domain of PPG-based AF detection. Furthermore, we maintain a dedicated website to curate the latest research in this area, with regular updates on a regular basis.</p>","PeriodicalId":20047,"journal":{"name":"Physiological measurement","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-04-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140288769","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-04-16DOI: 10.1088/1361-6579/ad3458
Claire C Onsager, Chulin Wang, Charles Costakis, Can C Aygen, Lauren Lang, Suzan van der Lee, Matthew A Grayson
Objective. Electrical impedance tomography (EIT) is a noninvasive imaging method whereby electrical measurements on the periphery of a heterogeneous conductor are inverted to map its internal conductivity. The EIT method proposed here aims to improve computational speed and noise tolerance by introducing sensitivity volume as a figure-of-merit for comparing EIT measurement protocols. Approach. Each measurement is shown to correspond to a sensitivity vector in model space, such that the set of measurements, in turn, corresponds to a set of vectors that subtend a sensitivity volume in model space. A maximal sensitivity volume identifies the measurement protocol with the greatest sensitivity and greatest mutual orthogonality. A distinguishability criterion is generalized to quantify the increased noise tolerance of high sensitivity measurements. Main result. The sensitivity volume method allows the model space dimension to be minimized to match that of the data space, and the data importance to be increased within an expanded space of measurements defined by an increased number of contacts. Significance. The reduction in model space dimension is shown to increase computational efficiency, accelerating tomographic inversion by several orders of magnitude, while the enhanced sensitivity tolerates higher noise levels up to several orders of magnitude larger than standard methods.
目的。电阻抗层析成像(EIT)是一种无创成像方法,通过对异质导体外围的电测量值进行反演,绘制其内部电导率图。本文提出的 EIT 方法旨在通过引入灵敏度体积作为比较 EIT 测量方案的优劣势,从而提高计算速度和噪声容限。方法。每个测量值都对应模型空间中的一个灵敏度向量,因此测量值集合又对应模型空间中一个灵敏度体积的向量集合。最大灵敏度体积确定了具有最大灵敏度和最大相互正交性的测量协议。对可区分性标准进行了概括,以量化高灵敏度测量所增加的噪声容限。主要结果。灵敏度体积法可以最小化模型空间维度,使其与数据空间维度相匹配,并在由更多接触点定义的扩展测量空间内提高数据的重要性。意义重大。模型空间维度的缩小提高了计算效率,使层析反演的速度加快了几个数量级,而灵敏度的提高可容忍比标准方法大几个数量级的更高噪声水平。
{"title":"Sensitivity volume as figure-of-merit for maximizing data importance in electrical impedance tomography","authors":"Claire C Onsager, Chulin Wang, Charles Costakis, Can C Aygen, Lauren Lang, Suzan van der Lee, Matthew A Grayson","doi":"10.1088/1361-6579/ad3458","DOIUrl":"https://doi.org/10.1088/1361-6579/ad3458","url":null,"abstract":"<italic toggle=\"yes\">Objective.</italic> Electrical impedance tomography (EIT) is a noninvasive imaging method whereby electrical measurements on the periphery of a heterogeneous conductor are inverted to map its internal conductivity. The EIT method proposed here aims to improve computational speed and noise tolerance by introducing sensitivity volume as a figure-of-merit for comparing EIT measurement protocols. <italic toggle=\"yes\">Approach.</italic> Each measurement is shown to correspond to a sensitivity vector in model space, such that the set of measurements, in turn, corresponds to a set of vectors that subtend a sensitivity volume in model space. A maximal sensitivity volume identifies the measurement protocol with the greatest sensitivity and greatest mutual orthogonality. A distinguishability criterion is generalized to quantify the increased noise tolerance of high sensitivity measurements. <italic toggle=\"yes\">Main result.</italic> The sensitivity volume method allows the model space dimension to be minimized to match that of the data space, and the data importance to be increased within an expanded space of measurements defined by an increased number of contacts. <italic toggle=\"yes\">Significance.</italic> The reduction in model space dimension is shown to increase <italic toggle=\"yes\">computational efficiency</italic>, accelerating tomographic inversion by several orders of magnitude, while the enhanced sensitivity <italic toggle=\"yes\">tolerates higher noise</italic> levels up to several orders of magnitude larger than standard methods.","PeriodicalId":20047,"journal":{"name":"Physiological measurement","volume":"48 1","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-04-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140613520","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-04-16DOI: 10.1088/1361-6579/ad33a1
Lin Yang, Zhijun Gao, Xinsheng Cao, Chunchen Wang, Hang Wang, Jing Dai, Yang Liu, Yilong Qin, Meng Dai, Binghua Zhang, Ke Zhao, Zhanqi Zhao
Objective. This study aims to explore the possibility of using electrical impedance tomography (EIT) to assess pursed lips breathing (PLB) performance of patients with chronic obstructive pulmonary disease (COPD).Methods. 32 patients with COPD were assigned equally to either the conventional group or the EIT guided group. All patients were taught to perform PLB by a physiotherapist without EIT in the conventional group or with EIT in the EIT guided group for 10 min. The ventilation of all patients in the final test were continuously monitored using EIT and the PLB performances were rated by another physiotherapist before and after reviewing EIT. The global and regional ventilation between two groups as well as between quite breathing (QB) and PLB were compared and rating scores with and without EIT were also compared.Results.For global ventilation, the inspiratory depth and the ratio of expiratory-to-inspiratory time during PLB was significantly larger than those during QB for both group (P< 0.001). The inspiratory depth and the ratio of expiratory-to-inspiratory time during PLB in the EIT guided group were higher compared to those in the conventional group (P< 0.001), as well as expiratory flow expiratory uniformity and respiratory stability were better (P< 0.001). For regional ventilation, center of ventilation significantly decreased during PLB (P< 0.05). The expiratory time constant during PLB in the EIT guided group was greater than that in the conventional group (P< 0.001). Additionally, Bland-Altman plots analysis suggested a high concordance between subjective rating and rating with the help of EIT, but the score rated after EIT observation significantly lower than that rated subjectively in both groups (score drop of -2.68 ± 1.1 in the conventional group and -1.19 ± 0.72 in the EIT guided group,P< 0.01).Conclusion.EIT could capture the details of PLB maneuver, which might be a potential tool to quantitatively evaluate PLB performance and thus assist physiotherapists to teach PLB maneuver to patients.
目的:
本研究旨在探讨使用电阻抗断层扫描(EIT)评估慢性阻塞性肺病患者做肺活量测定的可能性。在传统组中,所有患者均由物理治疗师在不使用 EIT 的情况下教其进行 PLB;在 EIT 指导组中,所有患者均由物理治疗师在使用 EIT 的情况下教其进行 PLB,时间为 10 分钟。在最后的测试中,所有患者的通气情况均由 EIT 持续监测,并由另一名物理治疗师在复查 EIT 前后对 PLB 表演进行评分。比较了两组之间以及相当呼吸(QB)和 PLB 之间的整体和区域通气情况,还比较了使用 EIT 和未使用 EIT 的评分。
{"title":"Visualizing pursed lips breathing of patients with chronic obstructive pulmonary disease through evaluation of global and regional ventilation using electrical impedance tomography.","authors":"Lin Yang, Zhijun Gao, Xinsheng Cao, Chunchen Wang, Hang Wang, Jing Dai, Yang Liu, Yilong Qin, Meng Dai, Binghua Zhang, Ke Zhao, Zhanqi Zhao","doi":"10.1088/1361-6579/ad33a1","DOIUrl":"10.1088/1361-6579/ad33a1","url":null,"abstract":"<p><p><i>Objective</i>. This study aims to explore the possibility of using electrical impedance tomography (EIT) to assess pursed lips breathing (PLB) performance of patients with chronic obstructive pulmonary disease (COPD).<i>Methods</i>. 32 patients with COPD were assigned equally to either the conventional group or the EIT guided group. All patients were taught to perform PLB by a physiotherapist without EIT in the conventional group or with EIT in the EIT guided group for 10 min. The ventilation of all patients in the final test were continuously monitored using EIT and the PLB performances were rated by another physiotherapist before and after reviewing EIT. The global and regional ventilation between two groups as well as between quite breathing (QB) and PLB were compared and rating scores with and without EIT were also compared.<i>Results.</i>For global ventilation, the inspiratory depth and the ratio of expiratory-to-inspiratory time during PLB was significantly larger than those during QB for both group (<i>P</i>< 0.001). The inspiratory depth and the ratio of expiratory-to-inspiratory time during PLB in the EIT guided group were higher compared to those in the conventional group (<i>P</i>< 0.001), as well as expiratory flow expiratory uniformity and respiratory stability were better (<i>P</i>< 0.001). For regional ventilation, center of ventilation significantly decreased during PLB (<i>P</i>< 0.05). The expiratory time constant during PLB in the EIT guided group was greater than that in the conventional group (<i>P</i>< 0.001). Additionally, Bland-Altman plots analysis suggested a high concordance between subjective rating and rating with the help of EIT, but the score rated after EIT observation significantly lower than that rated subjectively in both groups (score drop of -2.68 ± 1.1 in the conventional group and -1.19 ± 0.72 in the EIT guided group,<i>P</i>< 0.01).<i>Conclusion.</i>EIT could capture the details of PLB maneuver, which might be a potential tool to quantitatively evaluate PLB performance and thus assist physiotherapists to teach PLB maneuver to patients.</p>","PeriodicalId":20047,"journal":{"name":"Physiological measurement","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-04-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140120290","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-04-11DOI: 10.1088/1361-6579/ad37ed
Benjamin D Boudreaux, Ginny M Frederick, Patrick J O'Connor, Ellen M Evans, Michael D Schmidt
Increasing interest in measuring key components of the 24 h activity cycle (24-HAC) [sleep, sedentary behavior (SED), light physical activity (LPA), and moderate to vigorous physical activity (MVPA)] has led to a need for better methods. Single wrist-worn accelerometers and different self-report instruments can assess the 24-HAC but may not accurately classify time spent in the different components or be subject to recall errors.Objective. To overcome these limitations, the current study harmonized output from multiple complimentary research grade accelerometers and assessed the feasibility and logistical challenges of this approach.Approach. Participants (n= 108) wore an: (a) ActiGraph GT9X on the wrist, (b) activPAL3 on the thigh, and (c) ActiGraph GT3X+ on the hip for 7-10 d to capture the 24-HAC. Participant compliance with the measurement protocol was compared across devices and an algorithm was developed to harmonize data from the accelerometers. The resulting 24-HAC estimates were described within and across days.Main results. Usable data for each device was obtained from 94.3% to 96.7% of participants and 89.4% provided usable data from all three devices. Compliance with wear instructions ranged from 70.7% of days for the GT3X+ to 93.2% of days for the activPAL3. Harmonized estimates indicated that, on average, university students spent 34% of the 24 h day sleeping, 41% sedentary, 21% in LPA, and 4% in MVPA. These behaviors varied substantially by time of day and day of the week.Significance. It is feasible to use three accelerometers in combination to derive a harmonized estimate the 24-HAC. The use of multiple accelerometers can minimize gaps in 24-HAC data however, factors such as additional research costs, and higher participant and investigator burden, should also be considered.
{"title":"Harmonization of three different accelerometers to classify the 24 h activity cycle.","authors":"Benjamin D Boudreaux, Ginny M Frederick, Patrick J O'Connor, Ellen M Evans, Michael D Schmidt","doi":"10.1088/1361-6579/ad37ed","DOIUrl":"10.1088/1361-6579/ad37ed","url":null,"abstract":"<p><p>Increasing interest in measuring key components of the 24 h activity cycle (24-HAC) [sleep, sedentary behavior (SED), light physical activity (LPA), and moderate to vigorous physical activity (MVPA)] has led to a need for better methods. Single wrist-worn accelerometers and different self-report instruments can assess the 24-HAC but may not accurately classify time spent in the different components or be subject to recall errors.<i>Objective</i>. To overcome these limitations, the current study harmonized output from multiple complimentary research grade accelerometers and assessed the feasibility and logistical challenges of this approach.<i>Approach</i>. Participants (<i>n</i>= 108) wore an: (a) ActiGraph GT9X on the wrist, (b) activPAL3 on the thigh, and (c) ActiGraph GT3X+ on the hip for 7-10 d to capture the 24-HAC. Participant compliance with the measurement protocol was compared across devices and an algorithm was developed to harmonize data from the accelerometers. The resulting 24-HAC estimates were described within and across days.<i>Main results</i>. Usable data for each device was obtained from 94.3% to 96.7% of participants and 89.4% provided usable data from all three devices. Compliance with wear instructions ranged from 70.7% of days for the GT3X+ to 93.2% of days for the activPAL3. Harmonized estimates indicated that, on average, university students spent 34% of the 24 h day sleeping, 41% sedentary, 21% in LPA, and 4% in MVPA. These behaviors varied substantially by time of day and day of the week.<i>Significance</i>. It is feasible to use three accelerometers in combination to derive a harmonized estimate the 24-HAC. The use of multiple accelerometers can minimize gaps in 24-HAC data however, factors such as additional research costs, and higher participant and investigator burden, should also be considered.</p>","PeriodicalId":20047,"journal":{"name":"Physiological measurement","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-04-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140288768","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-04-09DOI: 10.1088/1361-6579/ad360b
Ethan C Hill, Chris E Proppe, Paola M Rivera, Sean M Lubiak, David H Gonzalez Rojas, John E Lawson, Hwan Choi, Hansen Mansy, Joshua L Keller
Objective. Surface mechanomyography (sMMG) can measure oscillations of the activated muscle fibers in three axes (i.e.X,Y, andZ-axes) and has been used to describe motor unit activation patterns (X-axis). The application of blood flow restriction (BFR) is common in exercise studies, but the cuff may restrict muscle fiber oscillations. Therefore, the purpose of this investigation was to examine the acute effects of submaximal, fatiguing exercise with and without BFR on sMMG amplitude in theX,Y, andZ-axes among female participants.Approach. Sixteen females (21 ± 1 years) performed two separate exercise bouts to volitional exhaustion that consisted of unilateral, submaximal (50% maximal voluntary isometric contraction [MVIC]) intermittent, isometric, leg extensions with and without BFR. sMMG was recorded and examined across percent time to exhaustion (%TTE) in 20% increments. Separate 2-way repeated measures ANOVA models were constructed: (condition [BFR, non-BFR]) × (time [20, 40, 60, 80, and 100% TTE]) to examine absolute (m·s-2) and normalized (% of pretest MVIC) sMMG amplitude in theX-(sMMG-X),Y-(sMMG-Y), andZ-(sMMG-Z) axes.Main results. The absolute sMMG-X amplitude responses were attenuated with the application of BFR (mean ± SD = 0.236 ± 0.138 m·s-2) relative to non-BFR (0.366 ± 0.199 m·s-2, collapsed across time) and for sMMG-Y amplitude at 60%-100% of TTE (BFR range = 0.213-0.232 m·s-2versus non-BFR = 0.313-0.445 m·s-2). Normalizing sMMG to pretest MVIC removed most, but not all the attenuation which was still evident for sMMG-Y amplitude at 100% of TTE between BFR (72.9 ± 47.2%) and non-BFR (98.9 ± 53.1%). Interestingly, sMMG-Z amplitude was not affected by the application of BFR and progressively decreased across %TTE (0.332 ± 0.167 m·s-2to 0.219 ± 0.104 m·s-2, collapsed across condition.)Significance. The application of BFR attenuated sMMG-X and sMMG-Y amplitude, although normalizing sMMG removed most of this attenuation. Unlike theXandY-axes, sMMG-Z amplitude was not affected by BFR and progressively decreased across each exercise bout potentially tracking the development of muscle fatigue.
{"title":"Blood flow restriction attenuates surface mechanomyography lateral and longitudinal, but not transverse oscillations during fatiguing exercise.","authors":"Ethan C Hill, Chris E Proppe, Paola M Rivera, Sean M Lubiak, David H Gonzalez Rojas, John E Lawson, Hwan Choi, Hansen Mansy, Joshua L Keller","doi":"10.1088/1361-6579/ad360b","DOIUrl":"10.1088/1361-6579/ad360b","url":null,"abstract":"<p><p><i>Objective</i>. Surface mechanomyography (sMMG) can measure oscillations of the activated muscle fibers in three axes (i.e.<i>X</i>,<i>Y</i>, and<i>Z</i>-axes) and has been used to describe motor unit activation patterns (<i>X</i>-axis). The application of blood flow restriction (BFR) is common in exercise studies, but the cuff may restrict muscle fiber oscillations. Therefore, the purpose of this investigation was to examine the acute effects of submaximal, fatiguing exercise with and without BFR on sMMG amplitude in the<i>X</i>,<i>Y</i>, and<i>Z</i>-axes among female participants.<i>Approach</i>. Sixteen females (21 ± 1 years) performed two separate exercise bouts to volitional exhaustion that consisted of unilateral, submaximal (50% maximal voluntary isometric contraction [MVIC]) intermittent, isometric, leg extensions with and without BFR. sMMG was recorded and examined across percent time to exhaustion (%TTE) in 20% increments. Separate 2-way repeated measures ANOVA models were constructed: (condition [BFR, non-BFR]) × (time [20, 40, 60, 80, and 100% TTE]) to examine absolute (m·s<sup>-2</sup>) and normalized (% of pretest MVIC) sMMG amplitude in the<i>X</i>-(sMMG-X),<i>Y</i>-(sMMG-Y), and<i>Z</i>-(sMMG-Z) axes.<i>Main results</i>. The absolute sMMG-X amplitude responses were attenuated with the application of BFR (mean ± SD = 0.236 ± 0.138 m·s<sup>-2</sup>) relative to non-BFR (0.366 ± 0.199 m·s<sup>-2</sup>, collapsed across time) and for sMMG-Y amplitude at 60%-100% of TTE (BFR range = 0.213-0.232 m·s<sup>-2</sup>versus non-BFR = 0.313-0.445 m·s<sup>-2</sup>). Normalizing sMMG to pretest MVIC removed most, but not all the attenuation which was still evident for sMMG-Y amplitude at 100% of TTE between BFR (72.9 ± 47.2%) and non-BFR (98.9 ± 53.1%). Interestingly, sMMG-Z amplitude was not affected by the application of BFR and progressively decreased across %TTE (0.332 ± 0.167 m·s<sup>-2</sup>to 0.219 ± 0.104 m·s<sup>-2</sup>, collapsed across condition.)<i>Significance</i>. The application of BFR attenuated sMMG-X and sMMG-Y amplitude, although normalizing sMMG removed most of this attenuation. Unlike the<i>X</i>and<i>Y</i>-axes, sMMG-Z amplitude was not affected by BFR and progressively decreased across each exercise bout potentially tracking the development of muscle fatigue.</p>","PeriodicalId":20047,"journal":{"name":"Physiological measurement","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-04-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140175965","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-04-08DOI: 10.1088/1361-6579/ad33a2
Márton Á Goda, Peter H Charlton, Joachim A Behar
Objective.Photoplethysmography is a non-invasive optical technique that measures changes in blood volume within tissues. It is commonly and being increasingly used for a variety of research and clinical applications to assess vascular dynamics and physiological parameters. Yet, contrary to heart rate variability measures, a field which has seen the development of stable standards and advanced toolboxes and software, no such standards and limited open tools exist for continuous photoplethysmogram (PPG) analysis. Consequently, the primary objective of this research was to identify, standardize, implement and validate key digital PPG biomarkers.Approach.This work describes the creation of a standard Python toolbox, denotedpyPPG, for long-term continuous PPG time-series analysis and demonstrates the detection and computation of a high number of fiducial points and digital biomarkers using a standard fingerbased transmission pulse oximeter.Main results.The improved PPG peak detector had an F1-score of 88.19% for the state-of-the-art benchmark when evaluated on 2054 adult polysomnography recordings totaling over 91 million reference beats. The algorithm outperformed the open-source original Matlab implementation by ∼5% when benchmarked on a subset of 100 randomly selected MESA recordings. More than 3000 fiducial points were manually annotated by two annotators in order to validate the fiducial points detector. The detector consistently demonstrated high performance, with a mean absolute error of less than 10 ms for all fiducial points.Significance.Based on these fiducial points,pyPPGengineered a set of 74 PPG biomarkers. Studying PPG time-series variability usingpyPPGcan enhance our understanding of the manifestations and etiology of diseases. This toolbox can also be used for biomarker engineering in training data-driven models.pyPPGis available onhttps://physiozoo.com/.
{"title":"pyPPG: a Python toolbox for comprehensive photoplethysmography signal analysis.","authors":"Márton Á Goda, Peter H Charlton, Joachim A Behar","doi":"10.1088/1361-6579/ad33a2","DOIUrl":"10.1088/1361-6579/ad33a2","url":null,"abstract":"<p><p><i>Objective.</i>Photoplethysmography is a non-invasive optical technique that measures changes in blood volume within tissues. It is commonly and being increasingly used for a variety of research and clinical applications to assess vascular dynamics and physiological parameters. Yet, contrary to heart rate variability measures, a field which has seen the development of stable standards and advanced toolboxes and software, no such standards and limited open tools exist for continuous photoplethysmogram (PPG) analysis. Consequently, the primary objective of this research was to identify, standardize, implement and validate key digital PPG biomarkers.<i>Approach.</i>This work describes the creation of a standard Python toolbox, denoted<i>pyPPG</i>, for long-term continuous PPG time-series analysis and demonstrates the detection and computation of a high number of fiducial points and digital biomarkers using a standard fingerbased transmission pulse oximeter.<i>Main results.</i>The improved PPG peak detector had an F1-score of 88.19% for the state-of-the-art benchmark when evaluated on 2054 adult polysomnography recordings totaling over 91 million reference beats. The algorithm outperformed the open-source original Matlab implementation by ∼5% when benchmarked on a subset of 100 randomly selected MESA recordings. More than 3000 fiducial points were manually annotated by two annotators in order to validate the fiducial points detector. The detector consistently demonstrated high performance, with a mean absolute error of less than 10 ms for all fiducial points.<i>Significance.</i>Based on these fiducial points,<i>pyPPG</i>engineered a set of 74 PPG biomarkers. Studying PPG time-series variability using<i>pyPPG</i>can enhance our understanding of the manifestations and etiology of diseases. This toolbox can also be used for biomarker engineering in training data-driven models.<i>pyPPG</i>is available onhttps://physiozoo.com/.</p>","PeriodicalId":20047,"journal":{"name":"Physiological measurement","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-04-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11003363/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140120289","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-04-03DOI: 10.1088/1361-6579/ad290b
Jacob McErlean, John Malik, Yu-Ting Lin, Ronen Talmon, Hau-Tieng Wu
Objective.We aimed to fuse the outputs of different electrocardiogram-derived respiration (EDR) algorithms to create one higher quality EDR signal.Methods.We viewed each EDR algorithm as a software sensor that recorded breathing activity from a different vantage point, identified high-quality software sensors based on the respiratory signal quality index, aligned the highest-quality EDRs with a phase synchronization technique based on the graph connection Laplacian, and finally fused those aligned, high-quality EDRs. We refer to the output as the sync-ensembled EDR signal. The proposed algorithm was evaluated on two large-scale databases of whole-night polysomnograms. We evaluated the performance of the proposed algorithm using three respiratory signals recorded from different hardware sensors, and compared it with other existing EDR algorithms. A sensitivity analysis was carried out for a total of five cases: fusion by taking the mean of EDR signals, and the four cases of EDR signal alignment without and with synchronization and without and with signal quality selection.Results.The sync-ensembled EDR algorithm outperforms existing EDR algorithms when evaluated by the synchronized correlation (γ-score), optimal transport (OT) distance, and estimated average respiratory rate score, all with statistical significance. The sensitivity analysis shows that the signal quality selection and EDR signal alignment are both critical for the performance, both with statistical significance.Conclusion.The sync-ensembled EDR provides robust respiratory information from electrocardiogram.Significance.Phase synchronization is not only theoretically rigorous but also practical to design a robust EDR.
{"title":"Unsupervised ensembling of multiple software sensors with phase synchronization: a robust approach for electrocardiogram-derived respiration.","authors":"Jacob McErlean, John Malik, Yu-Ting Lin, Ronen Talmon, Hau-Tieng Wu","doi":"10.1088/1361-6579/ad290b","DOIUrl":"10.1088/1361-6579/ad290b","url":null,"abstract":"<p><p><i>Objective.</i>We aimed to fuse the outputs of different electrocardiogram-derived respiration (EDR) algorithms to create one higher quality EDR signal.<i>Methods.</i>We viewed each EDR algorithm as a software sensor that recorded breathing activity from a different vantage point, identified high-quality software sensors based on the respiratory signal quality index, aligned the highest-quality EDRs with a phase synchronization technique based on the graph connection Laplacian, and finally fused those aligned, high-quality EDRs. We refer to the output as the sync-ensembled EDR signal. The proposed algorithm was evaluated on two large-scale databases of whole-night polysomnograms. We evaluated the performance of the proposed algorithm using three respiratory signals recorded from different hardware sensors, and compared it with other existing EDR algorithms. A sensitivity analysis was carried out for a total of five cases: fusion by taking the mean of EDR signals, and the four cases of EDR signal alignment without and with synchronization and without and with signal quality selection.<i>Results.</i>The sync-ensembled EDR algorithm outperforms existing EDR algorithms when evaluated by the synchronized correlation (γ-score), optimal transport (OT) distance, and estimated average respiratory rate score, all with statistical significance. The sensitivity analysis shows that the signal quality selection and EDR signal alignment are both critical for the performance, both with statistical significance.<i>Conclusion.</i>The sync-ensembled EDR provides robust respiratory information from electrocardiogram.<i>Significance.</i>Phase synchronization is not only theoretically rigorous but also practical to design a robust EDR.</p>","PeriodicalId":20047,"journal":{"name":"Physiological measurement","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-04-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139730296","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-03-29DOI: 10.1088/1361-6579/ad2eb5
Fabian Mueller-Graf, Paul Frenkel, Jonas Merz, Susanne Reuter, Brigitte Vollmar, Gerardo Tusman, Sven Pulletz, Stephan H Böhm, Amelie Zitzmann, Daniel A Reuter, Andy Adler
Objective. Since pulse wave transit time (PWTT) shortens as pulmonary artery pressure (PAP) increases it was suggested as a potential non-invasive surrogate for PAP. The state of tidal lung filling is also known to affect PWTT independently of PAP. The aim of this retrospective analysis was to test whether respiratory gating improved the correlation coefficient between PWTT and PAP.Approach. In each one of five anesthetized and mechanically ventilated pigs two high-fidelity pressure catheters were placed, one directly behind the pulmonary valve, and the second one in a distal branch of the pulmonary artery. PAP was raised using the thromboxane A2 analogue U46619 and animals were ventilated in a pressure controlled mode (I:E ratio 1:2, respiratory rate 12/min, tidal volume of 6 ml kg-1). All signals were recorded using the multi-channel platform PowerLab®. The arrival of the pulse wave at each catheter tip was determined using a MATLAB-based modified hyperbolic tangent algorithm and PWTT calculated as the time interval between these arrivals.Main results. Correlation coefficient for PWTT and mean PAP wasr= 0.932 for thromboxane. This correlation coefficient increased considerably when heart beats either at end-inspiration (r= 0.978) or at end-expiration (r= 0.985) were selected (=respiratory gating).Significance. The estimation of mean PAP from PWTT improved significantly when taking the respiratory cycle into account. Respiratory gating is suggested to improve for the estimation of PAP by PWTT.
由于脉搏波转运时间(PWTT)会随着肺动脉压(PAP)的增加而缩短,因此被认为是肺动脉压的潜在无创替代指标。众所周知,潮气肺充盈状态也会影响 PWTT,而与 PAP 无关。这项回顾性分析的目的是检验呼吸门控是否改善了 PWTT 和 PAP 之间的相关系数。在五头麻醉和机械通气的猪身上分别放置了两根高保真压力导管,一根直接位于肺动脉瓣后方,另一根位于肺动脉远端分支。使用血栓素 A2 类似物 U46619 提高血压,并以压力控制模式(I:E 比为 1:2,呼吸频率为 12/分钟,潮气量为 6 毫升/千克)对动物进行通气。所有信号均使用多通道平台 PowerLab® 进行记录。使用基于 MATLAB 的修正双曲正切算法确定脉搏波到达每个导管尖端的时间,并将 PWTT 计算为这些到达之间的时间间隔。对于血栓素,PWTT 与平均 PAP 的相关系数为 r = 0.932。当选择呼气末(r = 0.978)或呼气末(r = 0.985)的心脏搏动时(= 呼吸门控),该相关系数显著增加。因此,在考虑呼吸周期的情况下,通过脉搏波速度来估算平均肺活量的效果显著提高。建议呼吸门控可改善脉搏波速度测试法对 PAP 的估计。
{"title":"Respiratory gating improves correlation between pulse wave transit time and pulmonary artery pressure in experimental pulmonary hypertension.","authors":"Fabian Mueller-Graf, Paul Frenkel, Jonas Merz, Susanne Reuter, Brigitte Vollmar, Gerardo Tusman, Sven Pulletz, Stephan H Böhm, Amelie Zitzmann, Daniel A Reuter, Andy Adler","doi":"10.1088/1361-6579/ad2eb5","DOIUrl":"10.1088/1361-6579/ad2eb5","url":null,"abstract":"<p><p><i>Objective</i>. Since pulse wave transit time (PWTT) shortens as pulmonary artery pressure (PAP) increases it was suggested as a potential non-invasive surrogate for PAP. The state of tidal lung filling is also known to affect PWTT independently of PAP. The aim of this retrospective analysis was to test whether respiratory gating improved the correlation coefficient between PWTT and PAP.<i>Approach</i>. In each one of five anesthetized and mechanically ventilated pigs two high-fidelity pressure catheters were placed, one directly behind the pulmonary valve, and the second one in a distal branch of the pulmonary artery. PAP was raised using the thromboxane A2 analogue U46619 and animals were ventilated in a pressure controlled mode (I:E ratio 1:2, respiratory rate 12/min, tidal volume of 6 ml kg<sup>-1</sup>). All signals were recorded using the multi-channel platform PowerLab<sup>®</sup>. The arrival of the pulse wave at each catheter tip was determined using a MATLAB-based modified hyperbolic tangent algorithm and PWTT calculated as the time interval between these arrivals.<i>Main results</i>. Correlation coefficient for PWTT and mean PAP was<i>r</i>= 0.932 for thromboxane. This correlation coefficient increased considerably when heart beats either at end-inspiration (<i>r</i>= 0.978) or at end-expiration (<i>r</i>= 0.985) were selected (=respiratory gating).<i>Significance</i>. The estimation of mean PAP from PWTT improved significantly when taking the respiratory cycle into account. Respiratory gating is suggested to improve for the estimation of PAP by PWTT.</p>","PeriodicalId":20047,"journal":{"name":"Physiological measurement","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-03-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139997044","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-03-26DOI: 10.1088/1361-6579/ad2eb6
Zhe Wang, Yongxiong Wang, Xin Wan, Yiheng Tang
Objective.Extracting discriminative spatial information from multiple electrodes is a crucial and challenging problem for electroencephalogram (EEG)-based emotion recognition. Additionally, the domain shift caused by the individual differences degrades the performance of cross-subject EEG classification.Approach.To deal with the above problems, we propose the cerebral asymmetry representation learning-based deep subdomain adaptation network (CARL-DSAN) to enhance cross-subject EEG-based emotion recognition. Specifically, the CARL module is inspired by the neuroscience findings that asymmetrical activations of the left and right brain hemispheres occur during cognitive and affective processes. In the CARL module, we introduce a novel two-step strategy for extracting discriminative features through intra-hemisphere spatial learning and asymmetry representation learning. Moreover, the transformer encoders within the CARL module can emphasize the contributive electrodes and electrode pairs. Subsequently, the DSAN module, known for its superior performance over global domain adaptation, is adopted to mitigate domain shift and further improve the cross-subject performance by aligning relevant subdomains that share the same class samples.Main Results.To validate the effectiveness of the CARL-DSAN, we conduct subject-independent experiments on the DEAP database, achieving accuracies of 68.67% and 67.11% for arousal and valence classification, respectively, and corresponding accuracies of 67.70% and 67.18% on the MAHNOB-HCI database.Significance.The results demonstrate that CARL-DSAN can achieve an outstanding cross-subject performance in both arousal and valence classification.
{"title":"Cerebral asymmetry representation learning-based deep subdomain adaptation network for electroencephalogram-based emotion recognition.","authors":"Zhe Wang, Yongxiong Wang, Xin Wan, Yiheng Tang","doi":"10.1088/1361-6579/ad2eb6","DOIUrl":"10.1088/1361-6579/ad2eb6","url":null,"abstract":"<p><p><i>Objective.</i>Extracting discriminative spatial information from multiple electrodes is a crucial and challenging problem for electroencephalogram (EEG)-based emotion recognition. Additionally, the domain shift caused by the individual differences degrades the performance of cross-subject EEG classification.<i>Approach.</i>To deal with the above problems, we propose the cerebral asymmetry representation learning-based deep subdomain adaptation network (CARL-DSAN) to enhance cross-subject EEG-based emotion recognition. Specifically, the CARL module is inspired by the neuroscience findings that asymmetrical activations of the left and right brain hemispheres occur during cognitive and affective processes. In the CARL module, we introduce a novel two-step strategy for extracting discriminative features through intra-hemisphere spatial learning and asymmetry representation learning. Moreover, the transformer encoders within the CARL module can emphasize the contributive electrodes and electrode pairs. Subsequently, the DSAN module, known for its superior performance over global domain adaptation, is adopted to mitigate domain shift and further improve the cross-subject performance by aligning relevant subdomains that share the same class samples.<i>Main Results.</i>To validate the effectiveness of the CARL-DSAN, we conduct subject-independent experiments on the DEAP database, achieving accuracies of 68.67% and 67.11% for arousal and valence classification, respectively, and corresponding accuracies of 67.70% and 67.18% on the MAHNOB-HCI database.<i>Significance.</i>The results demonstrate that CARL-DSAN can achieve an outstanding cross-subject performance in both arousal and valence classification.</p>","PeriodicalId":20047,"journal":{"name":"Physiological measurement","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-03-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139997089","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-03-21DOI: 10.1088/1361-6579/ad2eb3
David P Byrne, Nicole Studer, Cristy Secombe, Alexander Cieslewicz, Giselle Hosgood, Anthea Raisis, Andy Adler, Martina Mosing
Objective. Data from two-plane electrical impedance tomography (EIT) can be reconstructed into various slices of functional lung images, allowing for more complete visualisation and assessment of lung physiology in health and disease. The aim of this study was to confirm the ability of 3D EIT to visualise normal lung anatomy and physiology at rest and during increased ventilation (represented by rebreathing).Approach. Two-plane EIT data, using two electrode planes 20 cm apart, were collected in 20 standing sedate horses at baseline (resting) conditions, and during rebreathing. EIT data were reconstructed into 3D EIT whereby tidal impedance variation (TIV), ventilated area, and right-left and ventral-dorsal centres of ventilation (CoVRLand CoVVD, respectively) were calculated in cranial, middle and caudal slices of lung, from data collected using the two planes of electrodes.Main results. There was a significant interaction of time and slice for TIV (p< 0.0001) with TIV increasing during rebreathing in both caudal and middle slices. The ratio of right to left ventilated area was higher in the cranial slice, in comparison to the caudal slice (p= 0.0002). There were significant effects of time and slice on CoVVDwhereby the cranial slice was more ventrally distributed than the caudal slice (p< 0.0009 for the interaction).Significance. The distribution of ventilation in the three slices corresponds with topographical anatomy of the equine lung. This study confirms that 3D EIT can accurately represent lung anatomy and changes in ventilation distribution during rebreathing in standing sedate horses.
目的:双平面电阻抗断层扫描(EIT)的数据可重建为各种肺功能图像切片,从而更全面地观察和评估健康和疾病时的肺部生理状况。这项研究的目的是确认三维电阻抗断层成像技术在静息状态和通气量增加(以再呼吸为代表)时观察正常肺部解剖和生理结构的能力:使用相距 20 厘米的两个电极平面,收集 20 匹站立镇静的马在基线(静息)状态和再呼吸时的双平面 EIT 数据。将 EIT 数据重建为三维 EIT,根据使用两个电极平面采集的数据,计算出肺部头颅、中部和尾部切片的潮气阻抗变化(TIV)、通气面积以及左右和腹背通气中心(分别为 CoVRL 和 CoVVD):时间和切片对 TIV 有明显的交互作用(p < 0.0001),尾部和中部切片的 TIV 在再吸气时增加。头颅切片与尾部切片相比,左右通气面积之比更高(p = 0.0002)。时间和切片对 CoVVD 有显着影响,其中颅骨切片比尾部切片更偏向腹侧分布(交互作用 p < 0.0009):三个切片的通气分布与马肺的地形解剖相符。这项研究证实,3d EIT 可以准确地反映站立镇静马匹的肺部解剖结构和再呼吸时通气分布的变化。
{"title":"Validation of three-dimensional thoracic electrical impedance tomography of horses during normal and increased tidal volumes.","authors":"David P Byrne, Nicole Studer, Cristy Secombe, Alexander Cieslewicz, Giselle Hosgood, Anthea Raisis, Andy Adler, Martina Mosing","doi":"10.1088/1361-6579/ad2eb3","DOIUrl":"10.1088/1361-6579/ad2eb3","url":null,"abstract":"<p><p><i>Objective</i>. Data from two-plane electrical impedance tomography (EIT) can be reconstructed into various slices of functional lung images, allowing for more complete visualisation and assessment of lung physiology in health and disease. The aim of this study was to confirm the ability of 3D EIT to visualise normal lung anatomy and physiology at rest and during increased ventilation (represented by rebreathing).<i>Approach</i>. Two-plane EIT data, using two electrode planes 20 cm apart, were collected in 20 standing sedate horses at baseline (resting) conditions, and during rebreathing. EIT data were reconstructed into 3D EIT whereby tidal impedance variation (TIV), ventilated area, and right-left and ventral-dorsal centres of ventilation (CoV<sub>RL</sub>and CoV<sub>VD</sub>, respectively) were calculated in cranial, middle and caudal slices of lung, from data collected using the two planes of electrodes.<i>Main results</i>. There was a significant interaction of time and slice for TIV (<i>p</i>< 0.0001) with TIV increasing during rebreathing in both caudal and middle slices. The ratio of right to left ventilated area was higher in the cranial slice, in comparison to the caudal slice (<i>p</i>= 0.0002). There were significant effects of time and slice on CoV<sub>VD</sub>whereby the cranial slice was more ventrally distributed than the caudal slice (<i>p</i>< 0.0009 for the interaction).<i>Significance</i>. The distribution of ventilation in the three slices corresponds with topographical anatomy of the equine lung. This study confirms that 3D EIT can accurately represent lung anatomy and changes in ventilation distribution during rebreathing in standing sedate horses.</p>","PeriodicalId":20047,"journal":{"name":"Physiological measurement","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-03-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139997045","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}