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Effect of Galls on the Metabolism of Chrysanthemum Species Based on Metabolomic Profiling. 基于代谢组学分析的胆囊对菊花代谢的影响。
IF 2.6 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-10-01 Epub Date: 2025-07-14 DOI: 10.1002/pca.70011
Hongting Yang, Wenmiao Li, Haoxi Xin, Qian He, Siyu Wu, Fadi Chen, Xi Chen

Introduction: Galls, which are abnormal or protruding tissues, form when insects bite plant cells and serve as evidence for understanding plant-insect interactions.

Objectives: This study is aimed at understanding the interactions between Chrysanthemum species and insects at the metabolomic level and to reveal the metabolic changes induced by insect galls.

Methodology: This study employed liquid chromatography-mass spectrometry (LC-MS) and gas chromatography-mass spectrometry (GC-MS), along with multivariate statistics and pathway enrichment, for metabolomic profiling of Chrysanthemum glabriusculum, including gall-infected and gall-free leaves, and reported the gall phenomenon in Chrysanthemum species for the first time.

Results: LC-MS metabolomics analysis identified 105 marker metabolites, with 61 upregulated and 42 downregulated. Organic acids were the most abundant (20.00%), followed by carbohydrates (16.19%) and flavonoids (14.29%). KEGG analysis revealed significant pathway enrichment in flavone and flavonol biosynthesis, the TCA cycle, and galactose metabolism (p < 0.05). GC-MS metabolomics analysis revealed 27 volatile secondary metabolites, predominantly terpenoids (16 types), followed mainly by alcohol (4 types) and ketone compounds (three types). VIP > 1 analysis revealed 13 differentially signature metabolites; gall tissue (CgCa) presented elevated levels of β-phellandrene, camphene, and 1,8-Cineole, whereas γ-Muurolene, α-Farnesene, and Copaene were downregulated in CgCa.

Conclusions: During gall induction, C. glabriusculum plays an important role in energy metabolism through the regulation of key metabolic pathways, such as galactose metabolism and the TCA cycle, and their products; moreover, by regulating the biosynthesis of flavonoids and flavonols and the corresponding accumulation of secondary metabolites (terpenoids, ketones, and alcohols), it defends against insect-induced galls.

虫瘿是昆虫叮咬植物细胞时形成的异常或突出的组织,是了解植物与昆虫相互作用的证据。目的:在代谢组学水平上了解菊花与昆虫的相互作用,揭示昆虫叮咬引起的代谢变化。方法:采用液相色谱-质谱联用(LC-MS)和气相色谱-质谱联用(GC-MS),结合多元统计和途径富集等方法,对光菊(glabriusculum)包括瘿病叶片和无瘿病叶片的代谢组学特征进行了分析,首次报道了菊花物种中的瘿病现象。结果:LC-MS代谢组学分析鉴定出105个标记代谢物,其中61个上调,42个下调。有机酸含量最高(20.00%),其次是碳水化合物(16.19%)和类黄酮(14.29%)。KEGG分析显示黄酮和黄酮醇生物合成、TCA循环和半乳糖代谢通路显著富集(p 1分析显示13种差异特征代谢物;β-茶树烯、莰烯和1,8-桉树脑在CgCa中表达升高,而γ-木烯、α-法尼烯和Copaene则表达下调。结论:在胆囊诱导过程中,光棘草通过调节半乳糖代谢和TCA循环等关键代谢途径及其产物,在能量代谢中发挥重要作用;此外,通过调节类黄酮和类黄酮醇的生物合成以及相应的次生代谢物(萜类、酮类和醇类)的积累,它可以抵御昆虫诱导的虫瘿。
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引用次数: 0
Rhododendri Daurici Folium: An Overview of Studies on the Study of Herbal Medicine, Chemical Composition, Pharmacological Action, Clinical Application, and Quality Control. 杜鹃花叶:中草药、化学成分、药理作用、临床应用及质量控制研究综述。
IF 2.6 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-08-01 Epub Date: 2025-05-19 DOI: 10.1002/pca.3537
Chenliang Li, Huixuan Tian, Wei Wu, Lingyang Kong, Jiao Xu, Lihong Zhang

The Rhododendri Daurici Folium (RDF) represents the desiccated foliage of Rhododendron dauricum L., belonging to the Rhododendron family. RDF abounds in diverse chemical elements, predominantly flavonoids, volatile oils, phenols, coumarin, and lignans. RDF functions as a cough and expectorant agent, primarily employed in the management of acute and chronic bronchitis and pharyngitis. RDF is also known for its pharmacological properties, including antibacterial, cardiotonic, antihypertensive, and anticancer properties. RDF is frequently utilized as a potent ingredient in Yingshanhong tablets, compound RDF syrup, XiaoKeChuan syrup, and various traditional Chinese medicinal concoctions, and it holds significant importance in clinical settings. This article's data were sourced from publications including PubMed, CNCK, SCI-HUB, Web of Science, Scopus, Chinese Pharmacopoeia, Chinese Dictionary of Traditional Chinese Medicine, Chinese Flora, and associated studies. The present document provides a comprehensive examination of the herbal properties, pharmacological effects, chemical makeup, clinical application, quality assurance, and safety assessments of RDF, serving as a guide for advancing and applying traditional Chinese medicine RDF.

杜鹃花叶(Rhododendri Daurici Folium, RDF)是杜鹃花科植物杜鹃花(Rhododendron dauricum L.)的干燥叶片。RDF富含多种化学元素,主要是类黄酮、挥发油、酚类、香豆素和木脂素。RDF的功能是咳嗽和祛痰剂,主要用于治疗急性和慢性支气管炎和咽炎。RDF还以其药理特性而闻名,包括抗菌、强心、抗高血压和抗癌特性。RDF经常被用作鹰山红片、复方RDF糖浆、消咳川糖浆和各种传统中药调和剂的有效成分,在临床环境中具有重要意义。本文数据来源于PubMed、CNCK、SCI-HUB、Web of Science、Scopus、《中国药典》、《中国中医药大辞典》、《中国植物志》及相关文献。本文对中药RDF的草药性质、药理作用、化学组成、临床应用、质量保证和安全评价等方面进行了综述,为中药RDF的发展和应用提供了指导。
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引用次数: 0
Fusion of NIR and MIR Spectroscopy With Advanced CARS-PLS Techniques for Precise Quantification of Total Polyphenols in Peanut Seeds. 融合近红外光谱和MIR光谱与先进的CARS-PLS技术精确定量花生种子中总多酚。
IF 2.6 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-08-01 Epub Date: 2025-07-01 DOI: 10.1002/pca.3549
Muhammad Bilal, Muhammad Arslan, Samee-Ullah, Waqar Iqbal, Suliman Khan, Haroon Elrasheid Tahir, Zhihua Li, Sun Xia, Zou Xiaobo

Introduction: The present study focuses on the application of near-infrared (NIR) spectroscopy, combined with mid-infrared (MIR) spectroscopy, to predict the levels of total polyphenols in peanut seed samples, highlighting innovative methodologies and advanced spectroscopic techniques.

Objective: To develop and validate accurate predictive models for quantifying total polyphenols in peanut seeds using NIR and MIR spectroscopy combined with advanced statistical approaches.

Material and methods: Partial least squares (PLS), competitive adaptive reweighted sampling PLS low-level (CARS-PLS FusionLL), and mid-level (CARS-PLS FusionML) techniques were employed for model development. The total polyphenols were quantified using a spectrophotometer, and the model's efficacy was evaluated using calibration correlation coefficients (Rc), prediction correlation coefficients (Rp), root mean square error of cross-validation (RMSECV), root mean square error of prediction (RMSEP), and residual predictive deviation (RPD).

Results: The CARS-PLS FusionML Fusion method demonstrated high precision, with determination coefficients for prediction (Rp = 0.9818) and calibration (Rc = 0.9819). The RMSECV and RMSEP were calculated at 1.62 and 1.80, respectively, with an RPD value of 7.36.

Conclusion: In conclusion, a precise method for measuring the amounts of polyphenols in peanut seeds is provided by integrating NIR and MIR spectroscopy with advanced statistical methods. These findings underscore the potential of NIR and MIR spectroscopy, combined with advanced data fusion, for non-destructive, rapid, and cost-effective quantification of total polyphenols in peanuts, offering practical applications in the food industry for quality control and safety assessment.

摘要:本研究重点介绍了近红外(NIR)光谱结合中红外(MIR)光谱预测花生种子样品中总多酚含量的应用,重点介绍了创新的方法和先进的光谱技术。目的:利用近红外光谱和MIR光谱结合先进的统计方法,建立并验证花生种子中总多酚的准确预测模型。材料和方法:采用偏最小二乘(PLS)、竞争自适应再加权抽样、PLS低级(CARS-PLS FusionLL)和中级(CARS-PLS FusionML)技术进行模型开发。采用分光光度计对总多酚进行定量,并采用校正相关系数(Rc)、预测相关系数(Rp)、交叉验证均方根误差(RMSECV)、预测均方根误差(RMSEP)和剩余预测偏差(RPD)评价模型的疗效。结果:CARS-PLS Fusion方法精密度高,预测和定标的确定系数分别为Rp = 0.9818和Rc = 0.9819。RMSECV和RMSEP分别为1.62和1.80,RPD值为7.36。结论:将近红外光谱和MIR光谱结合先进的统计方法,为花生种子中多酚含量的测定提供了一种精确的方法。这些发现强调了近红外光谱和MIR光谱结合先进的数据融合技术在无损、快速和经济有效地定量花生中总多酚方面的潜力,为食品工业的质量控制和安全评估提供了实际应用。
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引用次数: 0
An Integrated Strategy for Comprehensive Characterization of Traditional Chinese Medicine (TCM) Formulas: A Case Study of Gegen-Qinlian Decoction. 中药方剂综合表征的整合策略——以葛根芩连汤为例
IF 2.6 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-08-01 Epub Date: 2025-06-02 DOI: 10.1002/pca.3547
Zhitian Peng, Chongsheng Peng, Ying Peng, Xiaobo Li

Objective: An integrated strategy was utilized in this study to comprehensively characterize the chemical composition of Gegen-Qinlian Decoction (GQD).

Methods: The major components of GQD (total flavonoids, total saponins, total alkaloids, carbohydrates, and proteins) were determined firstly using colorimetric methods, while free amino acids and trace elements were analyzed by automatic amino acid analyzer and inductively coupled plasma-mass spectrometry (ICP-MS), respectively. After that, the small-molecule components of GQD were characterized using ultra-high performance liquid chromatography coupled with quadrupole time-of-flight tandem mass spectrometry (UHPLC-QTOF-MS/MS). Furthermore, a quantitative method was established for 26 representative compounds determination simultaneously using ultra-high performance liquid chromatography coupled with triple-quadrupole linear ion-trap tandem mass spectrometry (UHPLC-QTRAP-MS/MS) in multiple reaction monitoring (MRM) mode.

Results: The accurate content and proportion of the major constituents in GQD were determined for the first time. A total of 230 compounds were characterized from GQD, of which four undescribed alkaloids were identified initially by their tandem mass data analyses based on mass spectral fragmentation pathways of isoquinoline alkaloids. A quantitative method was established to determine 26 representative compounds, and validated through linearity, precision, repeatability, stability, and recovery. The total content of the 26 compounds accounted for 27.81%, of which baicalin being the most abundant was up to 107.26 ± 1 mg/g.

Conclusions: The present study achieved a comprehensive characterization of constituents in GQD, laying the foundation for elucidating the active components, mechanism, and the quality control of GQD, offering a valuable analytical framework for research on other traditional Chinese medicine (TCM) formulas.

目的:采用综合策略对葛根芩连汤的化学成分进行综合表征。方法:首先采用比色法测定GQD的主要成分(总黄酮、总皂苷、总生物碱、碳水化合物和蛋白质),然后分别采用自动氨基酸分析仪和电感耦合等离子体质谱法(ICP-MS)测定游离氨基酸和微量元素。然后,利用超高效液相色谱-四极杆飞行时间串联质谱(UHPLC-QTOF-MS/MS)对GQD的小分子成分进行表征。在多反应监测(MRM)模式下,建立了超高效液相色谱-三重四极杆线性离子阱串联质谱(UHPLC-QTRAP-MS/MS)同时测定26种代表性化合物的定量方法。结果:首次准确测定了药材中主要成分的含量和比例。从GQD中共鉴定了230个化合物,其中4个未描述的生物碱是基于异喹啉生物碱的质谱碎片化途径通过串联质谱数据分析初步鉴定的。建立了测定26个代表性化合物的定量方法,并通过线性、精密度、重复性、稳定性和回收率进行了验证。26种化合物总含量占总含量的27.81%,其中黄芩苷含量最高,达107.26±1 mg/g。结论:本研究实现了GQD成分的全面表征,为阐明GQD的有效成分、作用机制和质量控制奠定了基础,为其他中药方剂的研究提供了有价值的分析框架。
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引用次数: 0
ATR-FTIR Coupled With Machine Learning Provides a Fast Method for Identifying and Distinguishing 55 Varieties of Fruit-Derived Medicinal Materials. ATR-FTIR结合机器学习提供了一种快速识别和区分55种水果衍生药材的方法。
IF 2.6 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-08-01 Epub Date: 2025-05-29 DOI: 10.1002/pca.3545
Wen-Jie Zhao, Ya-Ling An, Chun-Qian Song, Yu-Shi Huang, Li-Jie Zhang, Kang-Nan Liu, Zhen-Wei Li, Xiao-Kang Liu, Dai-di Zhang, De-An Guo

Introduction: Fruit-derived medicinal materials (FDMM) are extensively utilized in daily life, yet the market is beset by substantial variety confusion, which undermines consumer rights and well-being. Consequently, accurate identification of these materials is essential for guaranteeing their quality, effectiveness, and safety.

Objectives: This study aimed to combine attenuated total reflection-Fourier transform infrared spectroscopy (ATR-FTIR) and machine learning (ML) techniques to differentiate and identify 55 kinds of FDMM.

Materials and methods: A total of 861 sample batches were collected, with 721 allocated for model establishment and 140 for independent validation. A PLS-DA model alongside nine machine learning algorithms-namely support vector machine (SVM), tree, K-nearest neighbor (KNN), discriminant, ensemble, support vector machine kernel (SVMK), logistic regression kernel (LRK), naive Bayes (NB), and neural network (NN)-were constructed. Considering both accuracy and computational efficiency, the optimal model was selected and evaluated in terms of its accuracy, precision, recall, and F1-score. The optimal model was further validated using 140 newly collected samples to ensure its long-term stability after several months.

Results: Among the 10 classification models, the KNN model showed exceptional classification capability, with all evaluation metric exceeding 0.98. The KNN model was validated by the new 140 samples with a prediction accuracy of 85.7%, confirming its capability in distinguishing most FDMM.

Conclusion: The application of ATR-FTIR technology combined with the robust classification capabilities of ML models enabled rapid and accurate differentiation and identification of 55 FDMM, which contributed to ensuring their quality.

导语:果源性药材在日常生活中被广泛使用,但市场上存在大量品种混淆,损害了消费者的权益和福祉。因此,准确识别这些材料对于保证其质量、有效性和安全性至关重要。目的:本研究旨在结合衰减全反射-傅里叶变换红外光谱(ATR-FTIR)和机器学习(ML)技术对55种FDMM进行鉴别。材料与方法:共收集861批样品,其中721批用于模型建立,140批用于独立验证。构建了PLS-DA模型以及9种机器学习算法,即支持向量机(SVM)、树、k近邻(KNN)、判别、集成、支持向量机核(SVMK)、逻辑回归核(LRK)、朴素贝叶斯(NB)和神经网络(NN)。考虑准确率和计算效率,选择最优模型,并从准确率、精密度、召回率和f1得分等方面进行评价。利用140个新采集的样品进一步验证了最优模型,以确保其数月后的长期稳定性。结果:在10个分类模型中,KNN模型分类能力突出,评价指标均超过0.98。通过140个样本对KNN模型进行了验证,预测准确率达到85.7%,证实了KNN模型对大多数FDMM的识别能力。结论:ATR-FTIR技术的应用,结合ML模型强大的分类能力,能够快速准确地对55个FDMM进行鉴别和鉴定,有助于保证FDMM的质量。
{"title":"ATR-FTIR Coupled With Machine Learning Provides a Fast Method for Identifying and Distinguishing 55 Varieties of Fruit-Derived Medicinal Materials.","authors":"Wen-Jie Zhao, Ya-Ling An, Chun-Qian Song, Yu-Shi Huang, Li-Jie Zhang, Kang-Nan Liu, Zhen-Wei Li, Xiao-Kang Liu, Dai-di Zhang, De-An Guo","doi":"10.1002/pca.3545","DOIUrl":"10.1002/pca.3545","url":null,"abstract":"<p><strong>Introduction: </strong>Fruit-derived medicinal materials (FDMM) are extensively utilized in daily life, yet the market is beset by substantial variety confusion, which undermines consumer rights and well-being. Consequently, accurate identification of these materials is essential for guaranteeing their quality, effectiveness, and safety.</p><p><strong>Objectives: </strong>This study aimed to combine attenuated total reflection-Fourier transform infrared spectroscopy (ATR-FTIR) and machine learning (ML) techniques to differentiate and identify 55 kinds of FDMM.</p><p><strong>Materials and methods: </strong>A total of 861 sample batches were collected, with 721 allocated for model establishment and 140 for independent validation. A PLS-DA model alongside nine machine learning algorithms-namely support vector machine (SVM), tree, K-nearest neighbor (KNN), discriminant, ensemble, support vector machine kernel (SVMK), logistic regression kernel (LRK), naive Bayes (NB), and neural network (NN)-were constructed. Considering both accuracy and computational efficiency, the optimal model was selected and evaluated in terms of its accuracy, precision, recall, and F1-score. The optimal model was further validated using 140 newly collected samples to ensure its long-term stability after several months.</p><p><strong>Results: </strong>Among the 10 classification models, the KNN model showed exceptional classification capability, with all evaluation metric exceeding 0.98. The KNN model was validated by the new 140 samples with a prediction accuracy of 85.7%, confirming its capability in distinguishing most FDMM.</p><p><strong>Conclusion: </strong>The application of ATR-FTIR technology combined with the robust classification capabilities of ML models enabled rapid and accurate differentiation and identification of 55 FDMM, which contributed to ensuring their quality.</p>","PeriodicalId":20095,"journal":{"name":"Phytochemical Analysis","volume":" ","pages":"1790-1802"},"PeriodicalIF":2.6,"publicationDate":"2025-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144174526","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Simultaneous Quantification of 22 Compounds in Talinum paniculatum Root and Proposal of Three Anti-Counterfeiting Quality Markers Using a Library-Aided UHPLC-Q-Orbitrap-MS/MS Method. 文库辅助UHPLC-Q-Orbitrap-MS/MS法同时定量塔根中22种化合物及3种防伪质量标记的建立
IF 2.6 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-08-01 Epub Date: 2025-05-24 DOI: 10.1002/pca.3543
Jianwu Li, Hanxiao Chai, Xican Li, Shaoman Chen, Rongxin Cai, Lanying Wang, Xiaoqiong Xu, Zhenhui Chen

Background: Talinum paniculatum root (pseudo ginseng in Chinese) is a widely distributed medicinal plant material in Asia, Africa, and America. However, its chemistry remains poorly understood nowadays.

Methods: Fresh Talinum paniculatum root was treated for the preparation of a lyophilized aqueous extract. The extract thereafter was subjected to qualitative and quantitative analysis using the library-aided ultra-high-performance liquid chromatography-quadrupole-Exactive-Orbitrap-tandem mass spectrometry (UHPLC-Q-Exactive-Orbitrap-MS/MS) technology.

Results: Based on MS/MS elucidation and comparison with the authentic standards in the library of UHPLC-Q-Exactive-Orbitrap-MS/MS apparatus, 22 compounds were accurately identified. Information retrieval suggested that 18 compounds belonged to "unexcavated" ones, which were found in the plant for the first time. Subsequently, all 22 compounds (including 18 "unexcavated" ones) were further quantified using the corresponding linear regression equations of authentic standards. All 22 compounds exhibited different contents from each other in the quantitative analysis. Particularly, synephrine had the highest content (8.159 ± 1.443 mg/g extract), and α-mangostin showed the lowest content (0.001 ± 0.000 mg/g extract), while chikusetsusaponin Iva displayed a moderate content (0.737 ± 0.274 mg/g extract).

Conclusion: On the basis of these results and relevant principles, synephrine, N-trans-feruloyltyramine, and chikusetsusaponin Iva are recommended as the anti-counterfeiting Q-markers of T. paniculatum root. These findings will help to understand the substance basis of the traditional medicinal functions of T. paniculatum root and to find a suitable quality-control method.

背景:人参是一种广泛分布于亚洲、非洲和美洲的药用植物。然而,它的化学成分至今仍知之甚少。方法:以鲜Talinum panulatum根为原料,制备冻干水提物。提取液采用库辅助超高效液相色谱-四极柱-萃取-轨道-串联质谱(uhplc -q -萃取-轨道-MS/MS)技术进行定性和定量分析。结果:通过MS/MS解析,并与uhplc - q - expac - orbitrap -MS/MS仪器库中的标准品比对,准确鉴定出22个化合物。资料检索表明,其中18个化合物为首次在该植物中发现的“未发掘”化合物。随后,所有22个化合物(包括18个“未发掘”的化合物)使用相应的正宗标准线性回归方程进一步量化。在定量分析中,22种化合物的含量各不相同。其中辛弗林含量最高(8.159±1.443 mg/g), α-山竹苷含量最低(0.001±0.000 mg/g),苦参皂苷含量中等(0.737±0.274 mg/g)。结论:基于上述结果和相关原理,推荐辛弗林、n -反式阿魏乙胺、七苦参皂苷Iva作为金参根的防伪q标记。这些研究结果将有助于深入了解虎皮根传统药用功能的物质基础,并为虎皮根的质量控制提供科学依据。
{"title":"Simultaneous Quantification of 22 Compounds in Talinum paniculatum Root and Proposal of Three Anti-Counterfeiting Quality Markers Using a Library-Aided UHPLC-Q-Orbitrap-MS/MS Method.","authors":"Jianwu Li, Hanxiao Chai, Xican Li, Shaoman Chen, Rongxin Cai, Lanying Wang, Xiaoqiong Xu, Zhenhui Chen","doi":"10.1002/pca.3543","DOIUrl":"10.1002/pca.3543","url":null,"abstract":"<p><strong>Background: </strong>Talinum paniculatum root (pseudo ginseng in Chinese) is a widely distributed medicinal plant material in Asia, Africa, and America. However, its chemistry remains poorly understood nowadays.</p><p><strong>Methods: </strong>Fresh Talinum paniculatum root was treated for the preparation of a lyophilized aqueous extract. The extract thereafter was subjected to qualitative and quantitative analysis using the library-aided ultra-high-performance liquid chromatography-quadrupole-Exactive-Orbitrap-tandem mass spectrometry (UHPLC-Q-Exactive-Orbitrap-MS/MS) technology.</p><p><strong>Results: </strong>Based on MS/MS elucidation and comparison with the authentic standards in the library of UHPLC-Q-Exactive-Orbitrap-MS/MS apparatus, 22 compounds were accurately identified. Information retrieval suggested that 18 compounds belonged to \"unexcavated\" ones, which were found in the plant for the first time. Subsequently, all 22 compounds (including 18 \"unexcavated\" ones) were further quantified using the corresponding linear regression equations of authentic standards. All 22 compounds exhibited different contents from each other in the quantitative analysis. Particularly, synephrine had the highest content (8.159 ± 1.443 mg/g extract), and α-mangostin showed the lowest content (0.001 ± 0.000 mg/g extract), while chikusetsusaponin Iva displayed a moderate content (0.737 ± 0.274 mg/g extract).</p><p><strong>Conclusion: </strong>On the basis of these results and relevant principles, synephrine, N-trans-feruloyltyramine, and chikusetsusaponin Iva are recommended as the anti-counterfeiting Q-markers of T. paniculatum root. These findings will help to understand the substance basis of the traditional medicinal functions of T. paniculatum root and to find a suitable quality-control method.</p>","PeriodicalId":20095,"journal":{"name":"Phytochemical Analysis","volume":" ","pages":"1778-1789"},"PeriodicalIF":2.6,"publicationDate":"2025-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144136255","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Different Forms of Manganese Provide Distinctive Metabolomics Signatures and Bioactive Profiles in Artemisia annua. 不同形式的锰在黄花蒿中提供不同的代谢组学特征和生物活性谱。
IF 2.6 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-08-01 Epub Date: 2025-05-16 DOI: 10.1002/pca.3538
Hajar Salehi, Abdolkarim Chehregani Rad, Luigi Lucini

Introduction: Natural products are among the main ingredients of medicinal plants, and strategies that enhance their bioactive profile by elemental supplementation have emerged recently. Manganese is involved in various plant secondary metabolism pathways among different micronutrients.

Objectives: This study investigated the effects of ionic (MnSO₄, MnCl₂), bulk (Mn₂O₃), and nano (Mn₂O₃-NP) manganese forms on Artemisia annua's secondary metabolism. It also studied the influence of the application method (seed priming vs. seed priming + foliar).

Methods: For this purpose, untargeted UHPLC-QTOF-HRMS metabolomics was conducted.

Results: The findings revealed that Mn form and application method significantly influenced the metabolomic profile and secondary metabolite composition of the leaves and inflorescences, regardless of tissue type. Metabolomic profiling using untargeted analysis and multivariate statistical tools (PCA, PLS-DA, and VIP scoring) showed significant variation in bioactive compound accumulation. Mn₂O₃ and MnCl₂ were most effective in enhancing nitrogen-containing compounds, phenylpropanoids, flavonoids, and terpenoids, possibly via ROS-mediated biosynthesis. Mn₂O₃ strongly increased lignans, while Mn₂O₃-NP showed the highest artemisinin accumulation (3.2-3.7 mg g-1 FW) compared to MnCl₂ and Mn₂O₃ (0.2-1.7 mg g-1 FW). Key pharmacological metabolites such as vincristine, Momilactone A, and terbinafine were identified by VIP2 analysis.

Conclusion: Mn₂O₃-NP application through seed priming is a promising and cost-effective approach to modulate bioactive metabolite production in Artemisia annua.

天然产物是药用植物的主要成分之一,近年来通过补充元素来提高其生物活性的策略已经出现。锰参与植物不同微量元素间的多种次生代谢途径。目的:研究离子锰(MnSO₄、MnCl₂)、大块锰(Mn₂O₃)和纳米锰(Mn₂O₃-NP)形式对黄花蒿次生代谢的影响。研究了灌种方式与灌种+叶面灌种方式的影响。方法:采用非靶向UHPLC-QTOF-HRMS代谢组学方法。结果:研究结果表明,无论组织类型如何,Mn形态和施用方式均显著影响叶片和花序的代谢组学特征和次生代谢物组成。使用非靶向分析和多变量统计工具(PCA、PLS-DA和VIP评分)的代谢组学分析显示,生物活性化合物积累存在显著差异。Mn₂O₃和MnCl₂对含氮化合物、苯丙烷、黄酮类化合物和萜类化合物最有效,可能是通过ros介导的生物合成。Mn₂O₃增加了木脂素,而Mn₂O₃-NP比MnCl₂和Mn₂O₃(0.2 ~ 1.7 mg g-1 FW)积累了最多的青蒿素(3.2 ~ 3.7 mg g-1 FW)。通过VIP2分析鉴定出长春新碱、莫内通A、特比萘芬等关键药理代谢物。结论:通过种子启动应用Mn₂O₃-NP调控黄花蒿生物活性代谢物的产生是一种有前景且经济的方法。
{"title":"Different Forms of Manganese Provide Distinctive Metabolomics Signatures and Bioactive Profiles in Artemisia annua.","authors":"Hajar Salehi, Abdolkarim Chehregani Rad, Luigi Lucini","doi":"10.1002/pca.3538","DOIUrl":"10.1002/pca.3538","url":null,"abstract":"<p><strong>Introduction: </strong>Natural products are among the main ingredients of medicinal plants, and strategies that enhance their bioactive profile by elemental supplementation have emerged recently. Manganese is involved in various plant secondary metabolism pathways among different micronutrients.</p><p><strong>Objectives: </strong>This study investigated the effects of ionic (MnSO₄, MnCl₂), bulk (Mn₂O₃), and nano (Mn₂O₃-NP) manganese forms on Artemisia annua's secondary metabolism. It also studied the influence of the application method (seed priming vs. seed priming + foliar).</p><p><strong>Methods: </strong>For this purpose, untargeted UHPLC-QTOF-HRMS metabolomics was conducted.</p><p><strong>Results: </strong>The findings revealed that Mn form and application method significantly influenced the metabolomic profile and secondary metabolite composition of the leaves and inflorescences, regardless of tissue type. Metabolomic profiling using untargeted analysis and multivariate statistical tools (PCA, PLS-DA, and VIP scoring) showed significant variation in bioactive compound accumulation. Mn₂O₃ and MnCl₂ were most effective in enhancing nitrogen-containing compounds, phenylpropanoids, flavonoids, and terpenoids, possibly via ROS-mediated biosynthesis. Mn₂O₃ strongly increased lignans, while Mn₂O₃-NP showed the highest artemisinin accumulation (3.2-3.7 mg g<sup>-1</sup> FW) compared to MnCl₂ and Mn₂O₃ (0.2-1.7 mg g<sup>-1</sup> FW). Key pharmacological metabolites such as vincristine, Momilactone A, and terbinafine were identified by VIP2 analysis.</p><p><strong>Conclusion: </strong>Mn₂O₃-NP application through seed priming is a promising and cost-effective approach to modulate bioactive metabolite production in Artemisia annua.</p>","PeriodicalId":20095,"journal":{"name":"Phytochemical Analysis","volume":" ","pages":"1695-1709"},"PeriodicalIF":2.6,"publicationDate":"2025-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144079508","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Bioactive Apigenin-7-O-β-Glucoside and Rosmarinic Acid Molecules From Two Nepeta Species: Bioactivity-Guided Isolation, In Vitro Evaluations, Pharmacokinetic and In Silico Approaches as Metabolic Enzyme Inhibition Agents. 芹菜素-7- o -β-葡萄糖苷和迷迭香酸分子的生物活性:生物活性引导分离、体外评价、药代动力学和作为代谢酶抑制剂的计算机方法
IF 2.6 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-08-01 Epub Date: 2025-04-27 DOI: 10.1002/pca.3536
Mesut Gok, Yunus Basar, Semiha Yenigun, Yasar Ipek, Lutfi Behcet, Tevfik Ozen, Ibrahim Demirtas

Introduction: In this study, apigenin-7-O-β-glucoside (AGL) was isolated from Nepeta nuda; also, rosmarinic acid (RA) was isolated from N. aristata and N. nuda.

Objectives: The aim of this study is to investigate the enzyme inhibitory, DNA protective, and antibacterial effects of AGL and RA isolated from two Nepeta species.

Material and methods: 1D and 2D NMR spectra and an MS chromatogram were recorded to identify AGL and RA. The antibacterial and DNA protection activities, enzyme inhibition, and kinetics investigated of AGL and RA. Molecular interactions, molecular dynamics (MD) simulations, molecular mechanics Poisson-Boltzmann surface area (MM-PBSA) calculations, density functional theory (DFT), molecular electrostatic potential (MEP) analyses, and prediction of activity spectra for substances (PASS) predictions for RA and AGL were investigated for the first time to evaluate the activity results.

Results: In this context, the inhibitory properties of AGL were higher in urease, α-amylase, and tyrosinase, whereas RA has a higher inhibitory activity on lipase, CA, and urease. In addition, AGL and RA showed effective antimicrobial activity against Staphylococcus aureus, while it also was effective DNA and deoxyribose protective activities. The stability of the complex formed by lipase, CA, and urease with RA and by tyrosinase and α-amylase with AGL was determined by MD simulations, and the energy results of RA were evaluated by MM-PBSA analysis. The DFT, MEP analysis, and PASS prediction showed that AGL and RA have a soft structure and can easily exchange electrons.

Conclusion: According to the results obtained from the current study, AGL and RA were explored as a drug model.

摘要:本研究从荆芥中分离得到芹菜素-7- o -β-葡萄糖苷(AGL);同时,从马塔塔和野田葵中分离到迷迭香酸(RA)。目的:研究从两种荆芥中分离得到的AGL和RA的酶抑制、DNA保护和抗菌作用。材料和方法:记录一维和二维核磁共振谱和质谱图,鉴定AGL和RA。研究了AGL和RA的抑菌和DNA保护活性、酶抑制和动力学。首次对RA和AGL的分子相互作用、分子动力学(MD)模拟、分子力学泊松-玻尔兹曼表面积(MM-PBSA)计算、密度泛函理论(DFT)、分子静电势(MEP)分析和物质活性谱预测(PASS)预测进行了研究,对活性结果进行了评价。结果:AGL对脲酶、α-淀粉酶和酪氨酸酶的抑制作用较强,而RA对脂肪酶、CA和脲酶的抑制作用较强。此外,AGL和RA对金黄色葡萄球菌具有有效的抗菌活性,同时具有有效的DNA和脱氧核糖保护活性。通过MD模拟确定了脂肪酶、CA、脲酶与RA、酪氨酸酶、α-淀粉酶与AGL形成复合物的稳定性,并通过MM-PBSA分析评价了RA的能量结果。DFT、MEP分析和PASS预测表明,AGL和RA具有较软的结构,易于交换电子。结论:根据本研究结果,AGL和RA可作为药物模型进行探索。
{"title":"Bioactive Apigenin-7-O-β-Glucoside and Rosmarinic Acid Molecules From Two Nepeta Species: Bioactivity-Guided Isolation, In Vitro Evaluations, Pharmacokinetic and In Silico Approaches as Metabolic Enzyme Inhibition Agents.","authors":"Mesut Gok, Yunus Basar, Semiha Yenigun, Yasar Ipek, Lutfi Behcet, Tevfik Ozen, Ibrahim Demirtas","doi":"10.1002/pca.3536","DOIUrl":"10.1002/pca.3536","url":null,"abstract":"<p><strong>Introduction: </strong>In this study, apigenin-7-O-β-glucoside (AGL) was isolated from Nepeta nuda; also, rosmarinic acid (RA) was isolated from N. aristata and N. nuda.</p><p><strong>Objectives: </strong>The aim of this study is to investigate the enzyme inhibitory, DNA protective, and antibacterial effects of AGL and RA isolated from two Nepeta species.</p><p><strong>Material and methods: </strong>1D and 2D NMR spectra and an MS chromatogram were recorded to identify AGL and RA. The antibacterial and DNA protection activities, enzyme inhibition, and kinetics investigated of AGL and RA. Molecular interactions, molecular dynamics (MD) simulations, molecular mechanics Poisson-Boltzmann surface area (MM-PBSA) calculations, density functional theory (DFT), molecular electrostatic potential (MEP) analyses, and prediction of activity spectra for substances (PASS) predictions for RA and AGL were investigated for the first time to evaluate the activity results.</p><p><strong>Results: </strong>In this context, the inhibitory properties of AGL were higher in urease, α-amylase, and tyrosinase, whereas RA has a higher inhibitory activity on lipase, CA, and urease. In addition, AGL and RA showed effective antimicrobial activity against Staphylococcus aureus, while it also was effective DNA and deoxyribose protective activities. The stability of the complex formed by lipase, CA, and urease with RA and by tyrosinase and α-amylase with AGL was determined by MD simulations, and the energy results of RA were evaluated by MM-PBSA analysis. The DFT, MEP analysis, and PASS prediction showed that AGL and RA have a soft structure and can easily exchange electrons.</p><p><strong>Conclusion: </strong>According to the results obtained from the current study, AGL and RA were explored as a drug model.</p>","PeriodicalId":20095,"journal":{"name":"Phytochemical Analysis","volume":" ","pages":"1677-1694"},"PeriodicalIF":2.6,"publicationDate":"2025-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144042679","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Rapid Identification of Gentiana rigescens Franch. Using Proofman Probe Ladder-Shape Melting Temperature Isothermal Amplification (Proofman-LMTIA) Technology. 龙胆的快速鉴定。采用Proofman- lmtia (Proofman- lmtia)探针梯状熔融温度等温放大技术。
IF 2.6 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-08-01 Epub Date: 2025-06-04 DOI: 10.1002/pca.3542
Xiaodong Zhang, Zongding Li, Gaofeng Liu, Xinhui Liu, Chunmei Song, Fugang Xiao, Deguo Wang

Introduction: Gentiana rigescens Franch. (Jianlongdan) and other Gentiana species (Longdan), including G. manshurica, G. scabra, and G. triflora, are valuable medicinal plants used in traditional Chinese medicine. However, their similar appearances and potential for market misidentification necessitate a rapid and accurate identification method.

Objective: This study aimed to develop a rapid identification method using Proofman-LMTIA technology to accurately identify Jianlongdan and prevent misidentification in the market.

Methods: Specific primers and Proofman probes were designed based on the differential region of Internal Transcribed Spacer 2 (ITS2) sequence between Jianlongdan and Longdan. The method's specificity, sensitivity, detection limit, and stability were evaluated, and its applicability to commercial gentian products was tested.

Results: The developed Proofman-LMTIA method demonstrated high specificity and sensitivity for Jianlongdan at an optimal reaction temperature of 56°C, with a detection limit of 10 pg/μL and the ability to identify 0.1% Jianlongdan in mixtures. The method showed good stability and was successfully applied to market samples.

Conclusion: The Proofman ladder-shape melting temperature isothermal amplification (Proofman-LMTIA) method offers a rapid, specific, and cost-effective tool for the authentication of Jianlongdan, crucial for ensuring the quality of herbal medicine and protecting consumers from misidentification and potential adulteration.

简介:龙胆。龙胆属(剑龙胆)和龙胆属(龙胆)的其他种类,包括manshurica、G. scabra和G. triflora,是一种有价值的中药药用植物。然而,它们的相似外观和潜在的市场误认需要一种快速准确的识别方法。目的:利用Proofman-LMTIA技术建立快速鉴定方法,准确鉴定健龙丹,防止市场上的误认。方法:根据建龙丹和龙丹的ITS2序列差异区设计特异性引物和Proofman探针。对该方法的特异性、灵敏度、检出限和稳定性进行了评价,并对其在龙胆商品中的适用性进行了检验。结果:所建立的Proofman-LMTIA方法对健龙丹具有较高的特异性和敏感性,最佳反应温度为56℃,检出限为10 pg/μL,可鉴别混合物中0.1%的健龙丹。该方法具有良好的稳定性,并成功地应用于市场样品。结论:Proofman阶梯状熔炼温度等温扩增法(Proofman- lmtia)是一种快速、特异、经济高效的中药煎龙丹鉴别方法,对保证中药质量、防止消费者误认和潜在掺假具有重要意义。
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引用次数: 0
Fluorescence Visual Identification of Four Main Varieties of Tibetan Medicinal Berberis cortex Based on Site-Specific PCR Technology. 基于位点特异性PCR技术的4个主要藏药小檗皮品种的荧光视觉鉴定
IF 2.6 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-08-01 Epub Date: 2025-06-18 DOI: 10.1002/pca.70002
Yan Chen, Hongying Li, TingTing Zhao, Jiaqi Cui, Wenjun Song, Huilin Li, Gang Fan, Rong Chen

Background: Berberis cortex is a typical multi-origin species in Tibetan medicine, with varying medicinal effects among different species. Establishing a rapid and accurate identification method for the major species of Tibetan medicinal B. cortex, including Berberis vernae Schneid. (SY), Berberis diaphana Maxim. (XH), Berberis kansuensis Schneid. (GS), and Berberis dictyophylla Franch. (CHZ), is conducive to the quality control of B. cortex.

Methods: Site-specific PCR visualization using SYBR Green I was developed based on rbcL SNP sites for SY, GS, and CHZ. For XH, which cannot be differentiated through rbcL and other barcoding SNP sites, RAPD-PCR methodology was employed to screen for species-specific sequences. A site-specific amplification visualization system was subsequently developed based on the identified sequence.

Results: The developed site-specific PCR visualization systems demonstrated excellent sensitivity, with all systems capable of detecting genomic DNA at concentrations as low as 100 fg. These systems were employed to analyze 16 batches of actual B. cortex samples. The analysis revealed that four samples were identified as SY, six samples as GS, two samples as CHZ, and three samples as XH. All results were concordant with sequencing data. One remaining negative sample was confirmed through sequencing as adulterated with Phellodendri Chinensis Cortex. Further authentication of 10 batches of Tibetan patent medicines containing B. cortex revealed that 2 batches contained both SY and GS, one batch contained both SY and CHZ, three batches contained exclusively GS, and three batches contained XH.

Conclusion: A site-specific PCR fluorescence visual identification system has been developed for the authentication of four major B. cortex species, enabling accurate identification of botanical origins in both B. cortex crude materials and Berberis-containing Tibetan patent medicines.

背景:小檗皮是藏医药中典型的多源种,不同种间药效差异较大。建立了包括小檗在内的主要藏药种皮的快速、准确鉴别方法。(SY), Berberis diaphana Maxim。(XH), kansuensis Berberis Schneid。(GS)和小檗(beris dictyophylla Franch)。(CHZ),有利于白芷的质量控制。方法:基于SY, GS和CHZ的rbcL SNP位点,使用SYBR Green I开发了位点特异性PCR可视化。对于无法通过rbcL和其他条形码SNP位点进行区分的XH,采用RAPD-PCR方法筛选物种特异性序列。随后,基于已确定的序列开发了位点特异性扩增可视化系统。结果:所开发的位点特异性PCR可视化系统表现出优异的灵敏度,所有系统都能够检测低至100 fg浓度的基因组DNA。这些系统被用于分析16批实际的B. cortex样品。分析发现4个样品为SY, 6个样品为GS, 2个样品为CHZ, 3个样品为XH。所有结果与测序数据一致。剩余1份阴性样品经测序确认为掺假黄柏皮。对10批含黄皮的藏成药进行进一步鉴定,发现2批同时含有SY和GS, 1批同时含有SY和CHZ, 3批只含GS, 3批含XH。结论:建立了4种主要黄皮药材的位点特异性PCR荧光视觉鉴定系统,可准确鉴定黄皮药材和含小檗碱的藏成药的植物来源。
{"title":"Fluorescence Visual Identification of Four Main Varieties of Tibetan Medicinal Berberis cortex Based on Site-Specific PCR Technology.","authors":"Yan Chen, Hongying Li, TingTing Zhao, Jiaqi Cui, Wenjun Song, Huilin Li, Gang Fan, Rong Chen","doi":"10.1002/pca.70002","DOIUrl":"10.1002/pca.70002","url":null,"abstract":"<p><strong>Background: </strong>Berberis cortex is a typical multi-origin species in Tibetan medicine, with varying medicinal effects among different species. Establishing a rapid and accurate identification method for the major species of Tibetan medicinal B. cortex, including Berberis vernae Schneid. (SY), Berberis diaphana Maxim. (XH), Berberis kansuensis Schneid. (GS), and Berberis dictyophylla Franch. (CHZ), is conducive to the quality control of B. cortex.</p><p><strong>Methods: </strong>Site-specific PCR visualization using SYBR Green I was developed based on rbcL SNP sites for SY, GS, and CHZ. For XH, which cannot be differentiated through rbcL and other barcoding SNP sites, RAPD-PCR methodology was employed to screen for species-specific sequences. A site-specific amplification visualization system was subsequently developed based on the identified sequence.</p><p><strong>Results: </strong>The developed site-specific PCR visualization systems demonstrated excellent sensitivity, with all systems capable of detecting genomic DNA at concentrations as low as 100 fg. These systems were employed to analyze 16 batches of actual B. cortex samples. The analysis revealed that four samples were identified as SY, six samples as GS, two samples as CHZ, and three samples as XH. All results were concordant with sequencing data. One remaining negative sample was confirmed through sequencing as adulterated with Phellodendri Chinensis Cortex. Further authentication of 10 batches of Tibetan patent medicines containing B. cortex revealed that 2 batches contained both SY and GS, one batch contained both SY and CHZ, three batches contained exclusively GS, and three batches contained XH.</p><p><strong>Conclusion: </strong>A site-specific PCR fluorescence visual identification system has been developed for the authentication of four major B. cortex species, enabling accurate identification of botanical origins in both B. cortex crude materials and Berberis-containing Tibetan patent medicines.</p>","PeriodicalId":20095,"journal":{"name":"Phytochemical Analysis","volume":" ","pages":"1840-1850"},"PeriodicalIF":2.6,"publicationDate":"2025-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144326606","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Phytochemical Analysis
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