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Biochemometrics-Based Identification of Gallic Acid and Gallic Acid Galloylglucosides From Kalanchoe fedtschenkoi With Cytotoxic Effects on Cultured Melanoma Cells. 基于生物化学计量学鉴定对培养黑色素瘤细胞具有细胞毒性作用的Kalanchoe fedtschenkoi中的没食子酸和没食子酸五倍子酰葡萄糖苷。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-11-25 DOI: 10.1002/pca.3480
Livia Marques Casanova, José Xavier do Nascimento Júnior, Jacqueline Elis de Souza, Raul do Couto Rodrigues, Amanda Bandeira Araújo, Emmanuel Arrais, Luiz Claudio de Oliveira Silva, Yasmim M Bessa Menezes, Raíssa Mara Kao Yien, Luzineide Wanderley Tinoco, Sônia Soares Costa, Mauro Sola-Penna, Patrícia Zancan

Introduction: Kalanchoe Adans. (Crassulaceae) is a genus of widespread succulent plants extensively studied for their biological activities. Plants of the genus are considered a potential source of antitumor agents.

Objective: This study aimed to investigate the effect of an aqueous extract and fractions of leaves of Kalanchoe fedtschenkoi R. Hamet & H. Perrier on the proliferation of melanoma cell lines employing an NMR-based biochemometric approach complemented with HPLC-DAD and UHPLC-MS/MS analyses.

Material and methods: The n-butanol fraction (KFBuOH) from K. fedtschenkoi aqueous leaf extract, which decreased B16F10 murine melanoma cells viability by 65% at 100 μg/mL, was fractionated with RP-18 SPE and Sephadex LH-20 column chromatography. The fractions were analyzed by 1H-NMR spectroscopy and submitted to MTT cytotoxicity assays against cultured melanoma cells. Orthogonal projection to latent structures discriminant analysis (OPLS-DA) was used to correlate their 1H-NMR profile and cytotoxic activity.

Results: This strategy enabled the identification of gallic acid (1) and two gallic acid glucosides-gallic acid 4-O-(6'-O-galloyl)-glucopyranoside) (2) and gallic acid 3-O-(6'-O-galloyl)-glucopyranoside) (3)-as putative bioactive substances, which was further corroborated by subsequent assays with enriched fractions and a gallic acid standard. The fractions enriched in gallic acid (KFA) and gallic acid galloylglucosides (KFB) evidenced selective cytotoxicity towards B16F10 cells (IC50 43.0 and 56.6 μg/mL, respectively) and MV3 human melanoma cells (IC50 93.6 and 66.1 μg/mL, respectively).

Conclusion: These results suggest a potential therapeutic use for K. fedtschenkoi in melanoma treatment. This is the first study to evidence a potential antitumor activity for gallic acid galloylglucosides.

介绍:Kalanchoe Adans.(Crassulaceae)是一种广泛分布的肉质植物属,因其生物活性而被广泛研究。该属植物被认为是抗肿瘤药物的潜在来源:本研究旨在研究 Kalanchoe fedtschenkoi R. Hamet & H. Perrier 的水提取物和叶片馏分对黑色素瘤细胞系增殖的影响:用 RP-18 SPE 和 Sephadex LH-20 柱色谱法对从 K. fedtschenkoi 水叶提取物中提取的正丁醇馏分 (KFBuOH) 进行分馏。对馏分进行了 1H-NMR 光谱分析,并对培养的黑色素瘤细胞进行了 MTT 细胞毒性试验。利用正交投影潜结构判别分析(OPLS-DA)将它们的 1H-NMR 图谱与细胞毒性活性联系起来:结果:这一方法鉴定出没食子酸(1)和两种没食子酸葡萄糖苷-没食子酸 4-O-(6'-O-吡咯酰基)-吡喃葡萄糖苷(2)和没食子酸 3-O-(6'-O-吡咯酰基)-吡喃葡萄糖苷(3)--为假定的生物活性物质。富含没食子酸(KFA)和没食子酸没食子酰葡萄糖苷(KFB)的馏分对 B16F10 细胞(IC50 分别为 43.0 和 56.6 μg/mL)和 MV3 人类黑色素瘤细胞(IC50 分别为 93.6 和 66.1 μg/mL)具有选择性细胞毒性:这些结果表明了 K. fedtschenkoi 在黑色素瘤治疗中的潜在疗效。这是首次证明没食子酸五倍子酰葡萄糖苷具有潜在抗肿瘤活性的研究。
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引用次数: 0
A Biolayer Interferometry-Based SARS-COV-2 Mpro-Targeted Active Ingredients Recognition System: Construction and Application in Ligand Screening From Herbal Medicines. 基于生物层干涉仪的 SARS-COV-2 Mpro 靶向活性成分识别系统:中药配体筛选中的构建与应用
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-11-20 DOI: 10.1002/pca.3462
Dai Zhang, Bing Han, Xiao-Fei Chen, Shuai Zhao, Wei-Xia Li, Hui Zhang, Ming-Liang Zhang, Meng-Qi Huo, Yong-Sheng Qiu, Ying-Jie Ren, Yao-Dong Zhang, Xian-Qing Ren, Wei Wang, Jin-Fa Tang

Introduction: Drug discovery research targeting SARS-CoV-2 and other emerging pathogens remains critically important. Active compounds derived from plants frequently serve as lead compounds for further drug discovery; however, numerous unrelated chemical constituents in crude extracts may obscure the effective ingredients in LC-MS analysis.

Objective: The aim of this study is to construct a biolayer interferometry (BLI)-based system for recognizing active ingredients that inhibit the main protease (Mpro) of SARS-CoV-2 and to identify the active chemical components binding to Mpro from herbal medicines.

Methodology: We developed a novel FRET fluorogenic probe by linking the amino acid sequences of the fluorescent proteins Lssmorange and mKate2 (Ls-mK). The interaction between traditional Chinese medicine and Mpro was analyzed using BLI. Ultrahigh performance liquid chromatography coupled with quadrupole time-of-flight mass spectrometry (UPLC-QTOF-MS) was employed to analyze the composition of herbal medicines.

Results: Fluorescence detection and spectroscopy confirmed the successful construction of an Mpro inhibitor screening system. Lanqin Oral Liquid (LQL) and Gardeniae fructus exhibited strong inhibitory effects on Mpro. Ten compounds were identified from G. fructus extracts; among them, deacetyl asperulosidic acid methyl ester (DAAME) and Gardoside were found to strongly bind to Mpro, with dissociation constants (KD) of 3.41 μM and 801 nM, respectively. The half-maximal inhibitory concentrations (IC50) of DAAME and Gardoside for Mpro were 27.46 and 13.7 μM, respectively.

Conclusion: This study established a functional Mpro inhibitor screening system. Among the 10 components identified from G. fructus that bind to Mpro, DAAME and Gardoside displayed strong binding and inhibitory activity, indicating their potential as lead compounds for inhibiting SARS-CoV-2 viral replication.

导言:针对 SARS-CoV-2 和其他新出现病原体的药物发现研究仍然至关重要。从植物中提取的活性化合物经常成为进一步发现药物的先导化合物;然而,在 LC-MS 分析中,粗提取物中众多不相关的化学成分可能会掩盖有效成分:本研究旨在构建一个基于生物层干涉仪(BLI)的系统,用于识别抑制 SARS-CoV-2 主要蛋白酶(Mpro)的活性成分,并从中草药中识别与 Mpro 结合的活性化学成分:方法:通过连接荧光蛋白Lssmorange和mKate2(Ls-mK)的氨基酸序列,我们开发了一种新型的FRET荧光探针。利用BLI分析了中药与Mpro之间的相互作用。采用超高效液相色谱-四极杆飞行时间质谱(UPLC-QTOF-MS)分析中药的成分:结果:荧光检测和光谱分析证实成功构建了Mpro抑制剂筛选系统。兰沁口服液(LQL)和栀子果实对Mpro有很强的抑制作用。从栀子提取物中鉴定出10个化合物,其中脱乙酰基金丝桃苷酸甲酯(DAAME)和栀子苷能与Mpro强结合,其解离常数(KD)分别为3.41 μM和801 nM。DAAME 和 Gardoside 对 Mpro 的半最大抑制浓度(IC50)分别为 27.46 μM 和 13.7 μM:本研究建立了一个功能性 Mpro 抑制剂筛选系统。结论:该研究建立了一个功能性 Mpro 抑制剂筛选系统,在从枸杞子中鉴定出的 10 种与 Mpro 结合的成分中,DAAME 和 Gardoside 表现出了很强的结合和抑制活性,表明它们有可能成为抑制 SARS-CoV-2 病毒复制的先导化合物。
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引用次数: 0
Determination of the Major Bioactive Component of Silybum marianum in Nutricosmetics by a HPLC Method With Amperometric Detection and UAE Pretreatment. 采用安培检测和 UAE 预处理的高效液相色谱法测定营养化妆品中的水飞蓟主要生物活性成分
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-11-17 DOI: 10.1002/pca.3478
Lucía Abad-Gil, M Jesús Gismera, M Teresa Sevilla, Jesús R Procopio

Introduction: Nutricosmetics derived from Silybum marianum, known for their anti-inflammatory and hepatoprotective properties, necessitate accurate quantification of silybin, a key bioactive component.

Objectives: This study aims to develop a novel high-performance liquid chromatography (HPLC) method with amperometric detection (HPLC-ECD) for the precise determination of silybin. An ultrasound-assisted extraction (UAE) procedure is also established for solid sample preparation prior to chromatographic analysis.

Materials and methods: Chromatographic separation of silybin was performed on a C18 column and using methanol-0.035 M potassium phosphate (pH 4.0) at 1.0 mL min-1 flow rate as mobile phase in gradient mode. The electrochemical detection (ECD) of silybin was carried out on a glassy carbon electrode (GCE) at +1.10 V versus Ag/AgCl. The UAE procedure for silybin extraction from solid samples was performed by 15 min sonication in an ultrasonic bath (80 kHz and 100% power) at room temperature.

Results: Under the optimal chromatographic conditions, silybin diastereoisomers (silybin A and silybin B) can be separated from other S. marianum flavonolignans in less than 20 min, with a detection limit (LOD) of 0.060 mg L-1 and a reproducibility (RSD) of 5%. This method was successfully applied to analyze silymarin-containing products with recoveries close to 100%.

Conclusions: This work presents the first HPLC method for silybin determination using an amperometric detector with a GCE. The LOD is competitive in comparison with previously published HPLC-DAD methods. This HPLC-ECD method allows silybin diastereoisomers identification without interferences of other flavonolignans present in silymarin extracts.

简介:水飞蓟具有抗炎和保护肝脏的特性,从水飞蓟中提取的营养化妆品需要对其关键的生物活性成分水飞蓟宾进行精确定量:本研究旨在开发一种新型高效液相色谱-安培检测法(HPLC-ECD),用于水飞蓟宾的精确测定。同时还建立了超声辅助萃取(UAE)程序,用于色谱分析前的固体样品制备:水飞蓟宾的色谱分离采用 C18 色谱柱,流动相为甲醇-0.035 M 磷酸二氢钾(pH 4.0),流速为 1.0 mL min-1,梯度模式。水飞蓟宾的电化学检测(ECD)在玻璃碳电极(GCE)上进行,相对于 Ag/AgCl 的电压为 +1.10 V。从固体样品中提取水飞蓟宾的 UAE 程序是在室温下在超声波浴(80 kHz,100% 功率)中超声 15 分钟:在最佳色谱条件下,水飞蓟宾非对映异构体(水飞蓟宾 A 和水飞蓟宾 B)可在 20 分钟内从其他水飞蓟黄酮类化合物中分离出来,检出限(LOD)为 0.060 mg L-1,重现性(RSD)为 5%。该方法成功用于分析含水飞蓟素的产品,回收率接近100%:本研究首次采用高效液相色谱法测定水飞蓟宾。与之前公布的 HPLC-DAD 方法相比,该方法的 LOD 具有竞争力。该 HPLC-ECD 方法可鉴定水飞蓟宾非对映异构体,且不会受到水飞蓟素提取物中其他黄酮类木脂素的干扰。
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引用次数: 0
A Machine Learning-Based Approach for the Prediction of Anticoagulant Activity of Hypericum perforatum L. and Evaluation of Compound Activity. 基于机器学习的金丝桃抗凝血活性预测及化合物活性评估方法。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-11-17 DOI: 10.1002/pca.3468
Zhiyong Zhang, Wennan Nie, Yijing Zhang, Mulan He, Cunhao Li, Shule Zhang, Wenlong Li

Introduction: Hypericum perforatum L. (HPL) is extensively researched domestically and internationally as a medicinal plant. However, no reports of studies related to the anticoagulant activity of HPL have been retrieved. The specific bioactive components are unknown.

Objective: The aim of this study was to develop a machine learning (ML) method for rapid prediction of anticoagulant activity in HPL and evaluation of compound activity.

Materials and methods: First, an in vitro anticoagulant activity assay was developed for the determination of the bioactivity of various medicinal parts of HPL. Then, the peak areas of compounds in HPL were integrated using UPLC-Q-TOF-MS analysis. Subsequently, nine independent ML methods and two ensemble learning methods have been established to predict the anticoagulant activity of HPL and to evaluate the contribution of compounds. Feature importance scores were used for models visualization.

Results: A total of 24 compounds were shown to exhibited superior anticoagulant activity. Molecular docking experiments likewise confirmed this result. The results show that the branches of HPL have excellent anticoagulant activity, which has been previously overlooked. The established ML model demonstrated good performance in the prediction of the activity of HPL.

Conclusion: The results were accurate and reliable, which significantly improved the efficiency of active compounds screening, and further exploration in this area is warranted.

导言:贯叶连翘(HPL)作为一种药用植物在国内外受到广泛研究。然而,目前尚未检索到有关金丝桃抗凝血活性的研究报告。具体的生物活性成分尚不清楚:本研究旨在开发一种机器学习(ML)方法,用于快速预测 HPL 的抗凝血活性并评估化合物的活性:首先,开发了一种体外抗凝血活性测定方法,用于测定 HPL 不同药用部位的生物活性。然后,利用 UPLC-Q-TOF-MS 分析法对 HPL 中化合物的峰面积进行整合。随后,建立了九种独立的 ML 方法和两种集合学习方法来预测 HPL 的抗凝活性并评估化合物的贡献。特征重要性得分被用于模型的可视化:结果:共有 24 种化合物表现出卓越的抗凝血活性。分子对接实验同样证实了这一结果。结果表明,HPL 的分支具有出色的抗凝血活性,而这一点之前一直被忽视。建立的 ML 模型在预测 HPL 活性方面表现出良好的性能:结果准确可靠,大大提高了活性化合物筛选的效率,值得在该领域进一步探索。
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引用次数: 0
Screening Inhibitors of α-Amylase in Polygala Radix Based on an Online Targeted Detection System and Molecular Docking. 基于在线靶向检测系统和分子对接筛选远志中的α-淀粉酶抑制剂
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-11-14 DOI: 10.1002/pca.3465
Zenghu Su, Hongbo Xu, Shizhong Chen, Shuming Li, Jingyu Weng, Yuangui Yang

Introduction: Targeted screening of inhibitors of key enzymes in the progression of diabetes from natural products is one of the effective methods for the treatment of diabetes. Polygala has been proved to reduce glucose levels; however, the bioactive compounds in Polygalae Radix (PR) that have anti-diabetic properties are unknown.

Objective: The purpose of this study was to explore the material basis of the anti-diabetic effect of PR by inhibiting α-amylase through an online detection system and molecular docking.

Methods: An online analysis platform was established and optimized for the screening of potent enzyme inhibitors from complex mixtures based on ultra-performance liquid chromatography-photodiode array-quadrupole-time-of-flight-mass spectrometry-α-amylase-fluorescence detector (UHPLC-PDA-Q-TOF-MSn-α-amylase-FLD) detection system and molecular docking, which could efficiently separate extracts, quickly detect α-amylase inhibitors, and determine their structures. Molecular docking confirms the inhibition of these compounds. The molecular interaction between α-amylase and the active compound was evaluated.

Results: Among the 101 compounds identified, 28 compounds had a strong inhibitory effect on α-amylase. Molecular docking screening confirmed the inhibition of these compounds and evaluated the molecular interactions between α-amylase and 30 active compounds, which strongly supported the experimental results. Among the evaluated compounds, onjisaponin R (83) and polygalaxanthone III (11) have the strongest inhibitory activity to α-amylase (the binding energies were -9.639 and -8.972 kcal/mol, respectively) and are potential lead compounds against diabetes.

Conclusion: This study proved the feasibility of using the existing platform to screen the active ingredients in PR extract, and provided a practical method for the rapid screening of potential anti-diabetic active ingredients in traditional Chinese medicine.

导言:从天然产品中筛选糖尿病关键酶的靶向抑制剂是治疗糖尿病的有效方法之一。远志已被证实能降低血糖水平,但远志中具有抗糖尿病特性的生物活性化合物尚不清楚:本研究的目的是通过在线检测系统和分子对接,探索远志中抑制α-淀粉酶、具有抗糖尿病作用的物质基础:建立并优化了基于超高效液相色谱-光电二极管阵列-四极杆-飞行时间质谱-α-淀粉酶-荧光检测器(UHPLC-PDA-Q-TOF-MSn-α-淀粉酶-FLD)检测系统和分子对接的在线分析平台,可从复杂混合物中高效分离提取物,快速检测α-淀粉酶抑制剂并确定其结构。分子对接证实了这些化合物的抑制作用。评估了α-淀粉酶与活性化合物之间的分子相互作用:结果:在鉴定出的 101 个化合物中,28 个化合物对 α 淀粉酶有很强的抑制作用。分子对接筛选证实了这些化合物的抑制作用,并评估了α-淀粉酶与 30 种活性化合物之间的分子相互作用,这有力地支持了实验结果。在评估的化合物中,芒柄皂苷 R(83)和远志酮 III(11)对α-淀粉酶的抑制活性最强(结合能分别为-9.639和-8.972 kcal/mol),是治疗糖尿病的潜在先导化合物:本研究证明了利用现有平台筛选 PR 提取物中有效成分的可行性,为快速筛选潜在的中药抗糖尿病有效成分提供了实用方法。
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引用次数: 0
Identification of Active Ingredients in Ginseng Volatile Oil: A Strategy Combining Computer Virtual Screening With Experimental Validation. 人参挥发油中活性成分的鉴定:计算机虚拟筛选与实验验证相结合的策略。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-11-14 DOI: 10.1002/pca.3456
Jie Yang, Zhiying Yu, Siyuan Li, Weijiang Zhang, Jianghua He, Xiaoyang Qu, Yunpeng Qi, Yihui Yin, Jingjing Wu, Lijuan Chen, Ling Dong, Wenjuan Xu

Background: Ginseng volatile oil (GVO) is a valuable active ingredient in ginseng (Panax ginseng C. A. Mey.) with high research potential. Drying procedures alter the real composition of the fresh material, for example, the evaporation of compounds with low boiling point. In this study, the composition of volatile oil in fresh ginseng (FG), sun-dried ginseng (SDG), and red ginseng (RD) was systematically analyzed to clarify the dominant components of FG and their potential pharmacological effects, which provides a basis for application and development of FG.

Methodology: GVO was obtained through water vapor distillation and analyzed using GC-MS. Pattern recognition analysis was employed to differentiate components in three processed types of ginseng. Based on this analysis, the active ingredients and key targets were screened. The binding mode and affinity were verified using molecular docking technology. Finally, the anticancer activity of GVO was verified by cell experiments.

Results: A total of 53 components were identified in three processed types of ginseng by GC-MS. Among them, 32 differential components were screened by pattern recognition analysis. Ultimately, 6 active ingredients (panaxydol, nerolidyl acetate, falcarinol, cis-β-farnesene, γ-elemene, and β-elemene) and 15 key targets were determined by network pharmacology analysis. Molecular docking results revealed that β-elemene exhibited a higher affinity with EGFR, ESR1, and ERK2. Cell experiments indicated that GVO promotes apoptosis in cancer cells.

Conclusion: This research proposed a strategy that integrated "component detection-virtual multitarget screening-active component prediction-experimental verification" to expedite the identification of active ingredients, providing insights for application of FG and the development of functional products.

背景:人参挥发油(GVO)是人参(Panax ginseng C. A. Mey.)干燥过程会改变新鲜材料的实际成分,例如低沸点化合物的蒸发。本研究系统分析了新鲜人参(FG)、晒干人参(SDG)和红参(RD)中的挥发油成分,以明确FG的主要成分及其潜在的药理作用,为FG的应用和开发提供依据:方法:通过水蒸气蒸馏获得龙胆紫,并使用气相色谱-质谱仪进行分析。方法:通过水蒸气蒸馏法获得 GVO,并采用气相色谱-质谱法进行分析。在此基础上,筛选出有效成分和关键靶点。利用分子对接技术验证了其结合模式和亲和力。最后,通过细胞实验验证了龙胆泻肝素的抗癌活性:结果:通过气相色谱-质谱(GC-MS)鉴定出三种加工人参中的 53 种成分。结果:通过气相色谱-质谱(GC-MS)鉴定出三种加工人参中的 53 种成分,并通过模式识别分析筛选出 32 种差异成分。最终,通过网络药理学分析确定了 6 种有效成分(三七醇、乙酸橙花酯、镰刀醇、顺式-β-法呢烯、γ-榄香烯和β-榄香烯)和 15 个关键靶点。分子对接结果显示,β-榄香烯与表皮生长因子受体(EGFR)、表皮生长因子受体(ESR1)和ERK2具有更高的亲和力。细胞实验表明,GVO 可促进癌细胞凋亡:该研究提出了 "成分检测-虚拟多目标筛选-活性成分预测-实验验证 "一体化的策略,加快了活性成分的鉴定,为FG的应用和功能性产品的开发提供了启示。
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引用次数: 0
Dual Assay Validation of Rosmarinus officinalis Extract as an Inhibitor of SARS-CoV-2 Spike Protein: Combining Pseudovirus Testing, Yeast Two-Hybrid, and UPLC-Q Exactive Orbitrap-MS Profiling. 将迷迭香提取物作为 SARS-CoV-2 Spike 蛋白抑制剂的双重测定验证:结合假病毒测试、酵母双杂交和UPLC-Q Exactive Orbitrap-MS分析。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-11-13 DOI: 10.1002/pca.3467
Yujing Huang, Rufeng Luo, Chenjing Tian, Duntao Zu, Jianni Yang, Wenlin Chen, Dingqiang Huang, Siyan Duan, Shunxin Yan, Yujia Yuan, Shengrong Li, Haibo Zhou, Fulong Lin, Qinghui He, Junxia Zheng

Introduction: This study evaluates the effectiveness of Traditional Chinese Medicine (TCM) extracts in blocking the interaction between the SARS-CoV-2 Spike protein and human ACE2 receptor, utilizing a dual-method approach to explore the antiviral potential of natural compounds.

Objectives: This work aims to evaluate the capability of TCM extracts in inhibiting the SARS-CoV-2 Spike protein and ACE2 receptor interaction using advanced biochemical assays.

Methods: A dual-method screening approach was utilized, beginning with a pseudovirus assay to assess the inhibition capabilities of TCM extracts in vitro, followed by a split-ubiquitin yeast two-hybrid (Y2H) system to validate interactions in live cells. Active compounds were characterized and quantified using UPLC-Q-Exactive-Orbitrap-MS.

Results: Among the 91 TCM extracts tested, Rosmarinus officinalis exhibited the most potent inhibition in both pseudovirus and Y2H assays, significantly reducing viral entry and disrupting the Spike-ACE2 interaction. Comprehensive chemical profiling via UPLC-Q-Exactive-Orbitrap-MS identified 132 compounds, including phenolics, flavonoids, and terpenoids.

Conclusion: This research validates the use of TCM extracts in viral inhibition strategies, demonstrating the utility of integrating traditional remedies with modern scientific approaches to discover new therapeutic agents.

引言本研究评估了中药提取物在阻断SARS-CoV-2 Spike蛋白和人类ACE2受体之间相互作用的有效性,利用双重方法探索天然化合物的抗病毒潜力:本研究旨在利用先进的生化检测方法评估中药提取物抑制SARS-CoV-2 Spike蛋白和ACE2受体相互作用的能力:该研究采用了双方法筛选方法,首先利用假病毒试验评估中药提取物在体外的抑制能力,然后利用分裂泛素酵母双杂交(Y2H)系统验证其在活细胞中的相互作用。采用 UPLC-Q-Exactive-Orbitrap-MS 对活性化合物进行了表征和定量:结果:在测试的91种中药提取物中,迷迭香在伪病毒和Y2H试验中都表现出了最有效的抑制作用,能显著减少病毒的进入并破坏Spike-ACE2的相互作用。通过UPLC-Q-Exactive-Orbitrap-MS进行的综合化学分析确定了132种化合物,包括酚类、类黄酮和萜类化合物:这项研究验证了中药提取物在病毒抑制策略中的应用,证明了将传统疗法与现代科学方法相结合以发现新的治疗药物的实用性。
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引用次数: 0
Integrating Metabolomic Analysis, Network Pharmacology, and Molecular Docking to Underlying Pharmacological Mechanism and Ethnobotanical Rationalization for Diabetes Mellitus: Study on Medicinal Plant Fibraurea tinctoria Lour. 将代谢组学分析、网络药理学和分子对接整合到糖尿病的基本药理机制和民族植物学合理化中:对药用植物 Fibraurea tinctoria Lour 的研究
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-11-13 DOI: 10.1002/pca.3477
Abdul Halim Umar, Septina Asih Widuri, Yohana Caecilia Sulistyaningsih, Diah Ratnadewi
<p><strong>Introduction: </strong>Fibraurea tinctoria Lour. has long been used in traditional medicine to treat diabetes mellitus (DM). However, a comprehensive scientific understanding of its potential active compounds and underlying pharmacological mechanisms still needs to be unveiled.</p><p><strong>Objective: </strong>This study, therefore, presents a novel approach by integrating metabolomic profiling, pharmacological network, and molecular docking analysis to investigate the potential of F. tinctoria as antidiabetes mellitus.</p><p><strong>Methods: </strong>Active compounds were obtained through analysis using ultrahigh-performance liquid chromatography-quadrupole-orbital ion trap-high resolution mass spectrometry (UHPLC-Q-Orbitrap HRMS) and screening of active compounds using Lipinski rule of five and ADMET parameters. Potential targets of F. tinctoria compounds and DM-related targets were retrieved from public databases, such as DisGeNET, GeneCards, OMIM, PharmaGKB, and TTD. The targets' gene ontology (GO) was created using DAVID and protein-protein interactions using STRING. The plant-organ-compound-target-disease network was constructed using Cytoscape. Then, molecular docking analysis predicted and verified the interactions of essential bioactive compounds of F. tinctoria and DM core targets.</p><p><strong>Results: </strong>The network pharmacology approach identified 35 active compounds, 565 compound-related targets, and 17,289 DM-related targets. EGFR, HSP90AA1, ESR1, HSP90AB1, and GSK3B were the core targets, whereas isolariciresinol, cubebin, corypalmine, (-)-8-oxocanadine, and (+)-N-methylcoclaurine were the most active compounds of F. tinctoria with DM potential. GO functional enrichment analysis revealed 483 biological processes, 485 cellular components, and 463 molecular functions. REACTOME pathway enrichment analysis yielded 463 significantly enriched signaling pathways. Of these pathways, the cytokine signaling in the immune system pathway may play a key role in treating DM. The results of molecular docking analysis showed that the core targets of DM, such as 5gnk, 3o0i, 6psj, 5ucj, and 1q5k, bind stably to the analyzed bioactive compounds of F. tinctoria.</p><p><strong>Conclusions: </strong>This study provides significant insights into the potential mechanism of F. tinctoria in treating DM. The main active compounds of F. tinctoria were found to interact with the core targets (EGFR, HSP90AA1, ESR1, HSP90AB1, and GSK3B) through the cytokine signaling pathway in the immune system, suggesting a potential therapeutic pathway for DM. However, it is essential to note that these findings are preliminary, and further research is necessary to validate them. Those research studies could involve in vitro and in vivo studies to confirm the bioactivity of the identified compounds and their interactions with the core targets. When the findings are confirmed, they could have significant clinical implications, potentially leading to develop
简介:长期以来,Fibraurea tinctoria Lour.一直被传统医学用于治疗糖尿病(DM)。然而,对其潜在活性化合物及其药理机制的全面科学认识仍有待揭示:因此,本研究提出了一种新方法,将代谢组学分析、药理学网络和分子对接分析结合起来,研究洋金花作为抗糖尿病药物的潜力:方法:利用超高效液相色谱-四极杆轨道离子阱高分辨质谱(UHPLC-Q-Orbitrap HRMS)分析获得活性化合物,并利用利宾斯基五法则和 ADMET 参数筛选活性化合物。从 DisGeNET、GeneCards、OMIM、PharmaGKB 和 TTD 等公共数据库中检索了洋二仙草化合物的潜在靶点和 DM 相关靶点。靶标的基因本体(GO)使用 DAVID 创建,蛋白质-蛋白质相互作用使用 STRING 创建。使用 Cytoscape 构建了植物-器官-化合物-靶标-疾病网络。然后,通过分子对接分析预测并验证了洋二仙草的基本生物活性化合物与 DM 核心靶标之间的相互作用:网络药理学方法确定了35个活性化合物、565个化合物相关靶点和17289个DM相关靶点。表皮生长因子受体(EGFR)、HSP90AA1、ESR1、HSP90AB1和GSK3B是其核心靶点,而ispariciresinol、cubebin、corypalmine、(-)-8-oxocanadine和(+)-N-甲基coclaurine是洋二仙草中最具DM潜力的活性化合物。GO 功能富集分析揭示了 483 个生物过程、485 种细胞成分和 463 种分子功能。REACTOME 通路富集分析得出了 463 条明显富集的信号通路。在这些通路中,免疫系统通路中的细胞因子信号转导可能在治疗DM中发挥关键作用。分子对接分析结果表明,DM的核心靶点,如5gnk、3o0i、6psj、5ucj和1q5k,与所分析的洋二仙草生物活性化合物稳定结合:本研究为了解洋二仙草治疗 DM 的潜在机制提供了重要依据。研究发现,洋二仙草的主要活性化合物可通过免疫系统中的细胞因子信号通路与核心靶点(表皮生长因子受体、HSP90AA1、ESR1、HSP90AB1 和 GSK3B)相互作用,这表明洋二仙草具有治疗 DM 的潜在途径。不过,必须指出的是,这些发现只是初步的,还需要进一步的研究来验证。这些研究可能涉及体外和体内研究,以确认已鉴定化合物的生物活性及其与核心靶点的相互作用。一旦这些发现得到证实,它们可能会产生重大的临床影响,从而有可能开发出治疗糖尿病的新策略。
{"title":"Integrating Metabolomic Analysis, Network Pharmacology, and Molecular Docking to Underlying Pharmacological Mechanism and Ethnobotanical Rationalization for Diabetes Mellitus: Study on Medicinal Plant Fibraurea tinctoria Lour.","authors":"Abdul Halim Umar, Septina Asih Widuri, Yohana Caecilia Sulistyaningsih, Diah Ratnadewi","doi":"10.1002/pca.3477","DOIUrl":"https://doi.org/10.1002/pca.3477","url":null,"abstract":"&lt;p&gt;&lt;strong&gt;Introduction: &lt;/strong&gt;Fibraurea tinctoria Lour. has long been used in traditional medicine to treat diabetes mellitus (DM). However, a comprehensive scientific understanding of its potential active compounds and underlying pharmacological mechanisms still needs to be unveiled.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Objective: &lt;/strong&gt;This study, therefore, presents a novel approach by integrating metabolomic profiling, pharmacological network, and molecular docking analysis to investigate the potential of F. tinctoria as antidiabetes mellitus.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Methods: &lt;/strong&gt;Active compounds were obtained through analysis using ultrahigh-performance liquid chromatography-quadrupole-orbital ion trap-high resolution mass spectrometry (UHPLC-Q-Orbitrap HRMS) and screening of active compounds using Lipinski rule of five and ADMET parameters. Potential targets of F. tinctoria compounds and DM-related targets were retrieved from public databases, such as DisGeNET, GeneCards, OMIM, PharmaGKB, and TTD. The targets' gene ontology (GO) was created using DAVID and protein-protein interactions using STRING. The plant-organ-compound-target-disease network was constructed using Cytoscape. Then, molecular docking analysis predicted and verified the interactions of essential bioactive compounds of F. tinctoria and DM core targets.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Results: &lt;/strong&gt;The network pharmacology approach identified 35 active compounds, 565 compound-related targets, and 17,289 DM-related targets. EGFR, HSP90AA1, ESR1, HSP90AB1, and GSK3B were the core targets, whereas isolariciresinol, cubebin, corypalmine, (-)-8-oxocanadine, and (+)-N-methylcoclaurine were the most active compounds of F. tinctoria with DM potential. GO functional enrichment analysis revealed 483 biological processes, 485 cellular components, and 463 molecular functions. REACTOME pathway enrichment analysis yielded 463 significantly enriched signaling pathways. Of these pathways, the cytokine signaling in the immune system pathway may play a key role in treating DM. The results of molecular docking analysis showed that the core targets of DM, such as 5gnk, 3o0i, 6psj, 5ucj, and 1q5k, bind stably to the analyzed bioactive compounds of F. tinctoria.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Conclusions: &lt;/strong&gt;This study provides significant insights into the potential mechanism of F. tinctoria in treating DM. The main active compounds of F. tinctoria were found to interact with the core targets (EGFR, HSP90AA1, ESR1, HSP90AB1, and GSK3B) through the cytokine signaling pathway in the immune system, suggesting a potential therapeutic pathway for DM. However, it is essential to note that these findings are preliminary, and further research is necessary to validate them. Those research studies could involve in vitro and in vivo studies to confirm the bioactivity of the identified compounds and their interactions with the core targets. When the findings are confirmed, they could have significant clinical implications, potentially leading to develop","PeriodicalId":20095,"journal":{"name":"Phytochemical Analysis","volume":" ","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-11-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142626238","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Novel Nordaucane Sesquiterpenoid and Sesquiterpene Lactone From Laserpitium Species: Isolation, Structure Elucidation, In Vitro, In Vivo, and In Silico Evaluation as Anticancer Agents. 从镭射蝮蛇种中提取的新型Nordaucane倍半萜和倍半萜内酯:作为抗癌剂的分离、结构阐明、体外、体内和硅学评估。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-11-12 DOI: 10.1002/pca.3472
Meltem Güleç, Halil Şenol, Nur Tan

Introduction: This study explores the cytotoxic activity-guided isolation of the underground parts of Laserpitium hispidum M. Bieb and Laserpitium petrophilum Boiss. & Heldr., which have not been previously investigated.

Objectives: The aim is to isolate and evaluate bioactive compounds from Laserpitium L. species with anticancer potential.

Material and methods: This study involves bioactivity-guided isolation and structural studies of the pure compounds utilizing NMR, UV-Vis, IR spectroscopies, and HRMS. The cytotoxic activity of the isolated compounds was evaluated in vitro and in vivo, whereas molecular modeling, docking, and ADME predictions were conducted using Schrödinger software.

Results: The study isolated phenylpropanoids (laserine (1), latifolone (2), myristicin (3)), sterol (stigmasterol (4)), polyenes (falcarindiol (5)), sesquiterpene lactone (11-hydroxybadkhyzin (6)), and nordaucane sesquiterpene (norlasidiol angelate (7)) from L. hispidum, whereas L. petrophilum yielded 10β-acetoxy-8α-angeloyloxy-6αH,7αH-guaian-3-en-12,6-olide (8), 10β-acetoxy-8α-senecioyloxy-6αH,7αH-guaian-3-en-6,12-olide (9) and acetylisomontanolide (10). Molecular docking simulations revealed stable interactions between compounds 7 and 9 with estrogen receptor α (ERα) and vascular endothelial growth factor receptor 2 (VEGFR2), with compound 7 showing superior stability and binding affinity. In silico ADME predictions indicated favorable pharmacokinetic properties, including high oral absorption.

Conclusion: Compounds 7 and 9, representing new nordaucane and sesquiterpene lactones, have not been previously reported. In vitro cytotoxicity revealed that compound 7 exhibits potent anti-cancer activity against MCF-7 cells, whereas compound 9 showed reduced cytotoxicity. In vivo testing in Caenorhabditis elegans supported these findings, suggesting safety and efficacy in organisms. In silico results emphasize the potential of these compounds, with compound 7 promising due to its stability and strong binding affinity.

简介本研究探讨了从Laserpitium hispidum M. Bieb和Laserpitium petrophilum Boiss:目的:从镭射草中分离并评估具有抗癌潜力的生物活性化合物:本研究利用核磁共振、紫外可见光、红外光谱和 HRMS 对纯化合物进行生物活性指导下的分离和结构研究。利用薛定谔软件对分离出的化合物进行了体外和体内细胞毒性活性评估,并进行了分子建模、对接和 ADME 预测:结果:研究从 L. hispidum 中分离出了苯丙酸类化合物(laserine (1)、latifolone (2)、myristicin (3))、甾醇(stigmasterol (4))、多烯类化合物(falcarindiol (5))、倍半萜内酯(11-hydroxybadkhyzin (6))和 nordaucane 倍半萜(norlasidiol angelate (7))。 而 L. petrophilum 产生了 10β-acetoxy-8α-angeloyloxy-6αH,7αH-guaian-3-en-12,6-olide (8)、10β-acetoxy-8α-senecioyloxy-6αH,7αH-guaian-3-en-6,12-olide (9) 和 acetylisomontanolide (10)。分子对接模拟显示,化合物 7 和 9 与雌激素受体 α(ERα)和血管内皮生长因子受体 2(VEGFR2)之间存在稳定的相互作用,其中化合物 7 显示出更高的稳定性和结合亲和力。硅学 ADME 预测表明,化合物具有良好的药代动力学特性,包括较高的口服吸收率:结论:化合物 7 和 9 代表了新的正杜烷内酯和倍半萜内酯,以前从未报道过。体外细胞毒性显示,化合物 7 对 MCF-7 细胞具有很强的抗癌活性,而化合物 9 则显示出较低的细胞毒性。在秀丽隐杆线虫体内进行的测试也支持这些发现,表明其在生物体内具有安全性和有效性。硅学研究结果强调了这些化合物的潜力,其中化合物 7 因其稳定性和强大的结合亲和力而前景广阔。
{"title":"Novel Nordaucane Sesquiterpenoid and Sesquiterpene Lactone From Laserpitium Species: Isolation, Structure Elucidation, In Vitro, In Vivo, and In Silico Evaluation as Anticancer Agents.","authors":"Meltem Güleç, Halil Şenol, Nur Tan","doi":"10.1002/pca.3472","DOIUrl":"https://doi.org/10.1002/pca.3472","url":null,"abstract":"<p><strong>Introduction: </strong>This study explores the cytotoxic activity-guided isolation of the underground parts of Laserpitium hispidum M. Bieb and Laserpitium petrophilum Boiss. & Heldr., which have not been previously investigated.</p><p><strong>Objectives: </strong>The aim is to isolate and evaluate bioactive compounds from Laserpitium L. species with anticancer potential.</p><p><strong>Material and methods: </strong>This study involves bioactivity-guided isolation and structural studies of the pure compounds utilizing NMR, UV-Vis, IR spectroscopies, and HRMS. The cytotoxic activity of the isolated compounds was evaluated in vitro and in vivo, whereas molecular modeling, docking, and ADME predictions were conducted using Schrödinger software.</p><p><strong>Results: </strong>The study isolated phenylpropanoids (laserine (1), latifolone (2), myristicin (3)), sterol (stigmasterol (4)), polyenes (falcarindiol (5)), sesquiterpene lactone (11-hydroxybadkhyzin (6)), and nordaucane sesquiterpene (norlasidiol angelate (7)) from L. hispidum, whereas L. petrophilum yielded 10β-acetoxy-8α-angeloyloxy-6αH,7αH-guaian-3-en-12,6-olide (8), 10β-acetoxy-8α-senecioyloxy-6αH,7αH-guaian-3-en-6,12-olide (9) and acetylisomontanolide (10). Molecular docking simulations revealed stable interactions between compounds 7 and 9 with estrogen receptor α (ERα) and vascular endothelial growth factor receptor 2 (VEGFR2), with compound 7 showing superior stability and binding affinity. In silico ADME predictions indicated favorable pharmacokinetic properties, including high oral absorption.</p><p><strong>Conclusion: </strong>Compounds 7 and 9, representing new nordaucane and sesquiterpene lactones, have not been previously reported. In vitro cytotoxicity revealed that compound 7 exhibits potent anti-cancer activity against MCF-7 cells, whereas compound 9 showed reduced cytotoxicity. In vivo testing in Caenorhabditis elegans supported these findings, suggesting safety and efficacy in organisms. In silico results emphasize the potential of these compounds, with compound 7 promising due to its stability and strong binding affinity.</p>","PeriodicalId":20095,"journal":{"name":"Phytochemical Analysis","volume":" ","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142626239","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Pine Needle of Pinus koraiensis (Siebold & Zucc) Essential Oil Through Liquid Nitrogen Quick-Freezing Assisted Solvent-Free Microwave Extraction Process for Antibacterial Application. 通过液氮速冻辅助无溶剂微波萃取工艺提取松针精油用于抗菌。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-11-12 DOI: 10.1002/pca.3470
Shuai Yu, Shengtao Ma, Qiuling Wang, Zhifei Chen, Gaolei Xi, Nan An, Hanning Yao, Tao Jia, Xiuhua Zhao, Lei Yang

Introduction: This study investigates the composition and antibacterial properties of essential oil extracted from Pinus koraiensis (Siebold & Zucc) pine needles using a liquid nitrogen freezing treatment combined with solvent-free microwave extraction (LNSFM).

Objective: The aim is to develop a low-energy, high-efficiency extraction method for conifer essential oils, analyze their chemical composition, and evaluate their antibacterial efficacy.

Methodology: Pine needle samples were frozen with liquid nitrogen and subsequently crushed. The essential oil was extracted using solvent-free microwave technology. A single-factor test and response surface methodology were employed to optimize extraction parameters. The extraction efficiency of LNSFM was compared with traditional methods through kinetics, and the essential oil components were analyzed using gas chromatography-mass spectrometry (GC-MS). The antibacterial activity of the extracted volatile oil was tested against Escherichia coli and Staphylococcus aureus.

Conclusion: LNSFM proves to be a green and efficient extraction method suitable for obtaining volatile oils from pine needles, which demonstrate significant antibacterial properties.

简介本研究调查了采用液氮冷冻处理结合无溶剂微波萃取(LNSFM)从柯来松(Pinus koraiensis (Siebold & Zucc))松针中提取的精油的成分和抗菌特性:目的:开发一种低能耗、高效率的针叶树精油萃取方法,分析其化学成分并评估其抗菌功效:松针样本用液氮冷冻,然后粉碎。方法:用液氮冷冻松针样品,然后将其粉碎,利用无溶剂微波技术提取精油。采用单因素试验和响应面方法优化萃取参数。通过动力学方法比较了 LNSFM 与传统方法的萃取效率,并使用气相色谱-质谱法(GC-MS)分析了精油成分。测试了提取的挥发油对大肠杆菌和金黄色葡萄球菌的抗菌活性:事实证明,LNSFM 是一种绿色高效的萃取方法,适合从松针中提取挥发油,并具有显著的抗菌特性。
{"title":"Pine Needle of Pinus koraiensis (Siebold & Zucc) Essential Oil Through Liquid Nitrogen Quick-Freezing Assisted Solvent-Free Microwave Extraction Process for Antibacterial Application.","authors":"Shuai Yu, Shengtao Ma, Qiuling Wang, Zhifei Chen, Gaolei Xi, Nan An, Hanning Yao, Tao Jia, Xiuhua Zhao, Lei Yang","doi":"10.1002/pca.3470","DOIUrl":"https://doi.org/10.1002/pca.3470","url":null,"abstract":"<p><strong>Introduction: </strong>This study investigates the composition and antibacterial properties of essential oil extracted from Pinus koraiensis (Siebold & Zucc) pine needles using a liquid nitrogen freezing treatment combined with solvent-free microwave extraction (LNSFM).</p><p><strong>Objective: </strong>The aim is to develop a low-energy, high-efficiency extraction method for conifer essential oils, analyze their chemical composition, and evaluate their antibacterial efficacy.</p><p><strong>Methodology: </strong>Pine needle samples were frozen with liquid nitrogen and subsequently crushed. The essential oil was extracted using solvent-free microwave technology. A single-factor test and response surface methodology were employed to optimize extraction parameters. The extraction efficiency of LNSFM was compared with traditional methods through kinetics, and the essential oil components were analyzed using gas chromatography-mass spectrometry (GC-MS). The antibacterial activity of the extracted volatile oil was tested against Escherichia coli and Staphylococcus aureus.</p><p><strong>Conclusion: </strong>LNSFM proves to be a green and efficient extraction method suitable for obtaining volatile oils from pine needles, which demonstrate significant antibacterial properties.</p>","PeriodicalId":20095,"journal":{"name":"Phytochemical Analysis","volume":" ","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142626240","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Phytochemical Analysis
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