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Digital identification of Aucklandiae radix, Vladimiriae radix, and Inulae radix based on multivariate algorithms and UHPLC-QTOF-MS analysis. 基于多元算法和 UHPLC-QTOF-MS 分析的 Aucklandiae radix、Vladimiriae radix 和 Inulae radix 数字鉴定。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-01 Epub Date: 2024-07-29 DOI: 10.1002/pca.3421
Xian Rui Wang, Jia Ting Zhang, Xiao Han Guo, Ming Hua Li, Wen Guang Jing, Xian Long Cheng, Feng Wei

Introduction: The identification of Aucklandiae Radix (AR), Vladimiriae Radix (VR), and Inulae Radix (IR) based on traits and microscopic features is susceptible to the state of samples and the subjective awareness of personnel, and the identification based on a few or single chemical compositions is a cumbersome and time-consuming procedure and fails to rationally and effectively utilize the information of unknown components and is not specificity enough.

Objectives: This study aimed to improve the identification efficiency, strengthen supervision, and realize digital identification of three Chinese medicines. Ultra-high-performance liquid chromatography with quadrupole time-of-flight mass spectrometry (UHPLC-QTOF-MS) combined with multivariate algorithms was used to explore the digital identification of AR, VR, and IR.

Materials and methods: UHPLC-QTOF-MS was used to analyze AR, VR, and IR. The MS data combined with multivariate algorithms such as partial least squares discrimination analysis (PLS-DA) and artificial neural networks (ANNs) was used to filter important variables and data modeling. Finally, the optimal model was selected for the digital identification of three herbs.

Results: The results showed that three herbs can be distinguished on the whole level, and through feature screening, 591 characteristic variables combined with multivariate algorithms to construct data models. The ANN model was the best with accuracy = 0.983, precision = 0.984, and external verification showed the reliability and practicability of ANN model.

Conclusion: ANN model combined with MS data is of great significance for tdigital identification of AR, VR, and IR. It is an important reference for developing the digital identification of traditional Chinese medicines at the individual level based on UHPLC-QTOF-MS and multivariate algorithms.

导言:根据性状和显微特征对杜仲、黄芪、茵陈进行鉴定,易受样品状态和人员主观意识的影响;根据少数或单一化学成分进行鉴定,程序繁琐、耗时长,不能合理有效地利用未知成分的信息,特异性不足:本研究旨在提高三种中药的鉴定效率,加强监管,实现数字化鉴定。材料与方法:采用超高效液相色谱-四极杆飞行时间质谱(UHPLC-QTOF-MS)结合多元算法对AR、VR和IR三种中药进行数字化鉴定:采用超高效液相色谱-瞬态傅立叶变换质谱(UHPLC-QTOF-MS)分析 AR、VR 和 IR。将质谱数据与偏最小二乘判别分析(PLS-DA)和人工神经网络(ANN)等多元算法相结合,过滤重要变量并建立数据模型。最后,选择了最佳模型对三种药材进行数字识别:结果表明,三种药材可以从整体上进行鉴别,通过特征筛选,591 个特征变量结合多元算法构建了数据模型。ANN模型的准确度=0.983,精确度=0.984,为最佳模型,外部验证表明ANN模型可靠实用:结论:ANN 模型与 MS 数据相结合,对 AR、VR 和 IR 的数字识别具有重要意义。结论:ANN 模型与 MS 数据相结合对 AR、VR 和 IR 的数字化鉴定具有重要意义,对基于 UHPLC-QTOF-MS 和多元算法开展中药个体水平的数字化鉴定具有重要的参考价值。
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引用次数: 0
Chemical profiling and quality evaluation of raw and vinegar-processing frankincense by multiple UPLC-MS/MS techniques. 利用多种 UPLC-MS/MS 技术对乳香原料和醋加工乳香进行化学分析和质量评估。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-01 Epub Date: 2024-08-06 DOI: 10.1002/pca.3435
Na Li, Yuan Wang, Jinqiu Rao, Zicheng Ma, Bingyang Zhang, Zhiying Dou, Kai Wang, Feng Qiu

Introduction: Frankincense is used for analgesic, tumor-suppressive, and anti-inflammatory treatments in Traditional Chinese Medicine but poses toxicological concerns. Vinegar processing is a common technique used to reduce the toxicity of frankincense.

Objective: This study aimed to investigate the chemical composition and quality evaluation of raw and vinegar-processing frankincense by multiple UPLC-MS/MS techniques. Additionally, we purposed refining the vinegar processing technique and identifying potentially harmful ingredients in the raw frankincense.

Methodology: Sub-chronic oral toxicity studies were conducted on raw and vinegar-processing frankincense in rats. The composition of frankincense was identified by UPLC-Q-TOF-MS/MS. Chemometrics were used to differentiate between raw and vinegar-processing frankincense. Potential chemical markers were identified by selecting differential components, which were further exactly determined by UPLC-QQQ-MS/MS. Moreover, the viability of the HepG2 cells of those components with reduced contents after vinegar processing was assessed.

Results: The toxicity of raw frankincense is attenuated by vinegar processing, among which vinegar-processing frankincense (R40) (herb weight: rice vinegar weight = 40:1) exhibited the lowest toxicity. A total of 83 components were identified from frankincense, including 40 triterpenoids, 37 diterpenoids, and 6 other types. The contents of six components decreased after vinegar-processing, with the lowest levels in R40. Three components, specifically 3α-acetoxy-11-keto-β-boswellic acid (AKBA), 3α-acetoxy-α-boswellic acid (α-ABA), and 3α-acetoxy-β-boswellic acid (β-ABA), inhibited the viability of HepG2 cells. The processing of frankincense with vinegar at a ratio of 40:1 could be an effective method of reducing the toxicity in raw frankincense.

Conclusion: Our research improves understanding of the toxic substance basis and facilitates future assessments of frankincense quality.

简介:乳香在中医中被用于镇痛、抑制肿瘤和抗炎治疗,但其毒性令人担忧。醋加工是降低乳香毒性的常用技术:本研究旨在通过多种 UPLC-MS/MS 技术研究生乳香和醋加工乳香的化学成分和质量评价。此外,我们还打算改进醋加工技术,并确定生乳香中的潜在有害成分:方法:对生乳香和醋加工乳香进行了大鼠亚慢性口服毒性研究。乳香的成分通过 UPLC-Q-TOF-MS/MS 进行鉴定。化学计量学被用来区分生乳香和醋加工乳香。通过选择不同的成分,确定了潜在的化学标记物,并进一步通过 UPLC-QQQ-MS/MS 进行了精确测定。此外,还评估了醋加工后成分含量减少的 HepG2 细胞的存活率:结果:生乳香的毒性经醋加工后有所减弱,其中醋加工乳香(R40)(药材重量:米醋重量=40:1)的毒性最低。从乳香中总共鉴定出 83 种成分,包括 40 种三萜类化合物、37 种二萜类化合物和 6 种其他类型的化合物。醋处理后,六种成分的含量下降,其中 R40 的含量最低。三种成分,特别是 3α-acetoxy-11-keto-β-boswellic acid(AKBA)、3α-acetoxy-α-boswellic acid(α-ABA)和 3α-acetoxy-β-boswellic acid(β-ABA)抑制了 HepG2 细胞的活力。以 40:1 的比例用醋加工乳香可以有效降低生乳香的毒性:我们的研究增进了对有毒物质基础的了解,有助于今后对乳香质量的评估。
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引用次数: 0
Comprehensive analysis of chemical and enantiomeric stability of terpenes in Cannabis sativa L. flowers. 全面分析大麻花中萜烯类化合物的化学稳定性和对映体稳定性。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-01 Epub Date: 2024-08-05 DOI: 10.1002/pca.3432
Justine Raeber, Bryan Bajor, Michael Poetzsch, Christian Steuer

Objective: Cannabis sativa L. is renowned for its medicinal and recreational uses. With the increasing global legalization of C. sativa L.-based products for medicinal purposes, there is a growing need for well-characterized products. While the stability of cannabinoids such as tetrahydrocannabinol and cannabidiol is well understood, information on the chemical and enantiomeric stability of terpenes remains scarce. This is despite the fact that terpenes are also thought to have pharmacological activity and may contribute to the overall effect of C. sativa L.

Methods: To address these challenges, four analytical methods based on chiral, polar, and apolar gas chromatographic separation combined with either MS or FID detection were developed and validated. These methods successfully separated and quantified a total of 29 terpenes, including 13 enantiomers and 5 diastereomers specific to C. sativa L. Furthermore, terpenes and authentic C. sativa L. flowers and extracts were subjected to UV and heat treatments to observe potential degradation reactions over time.

Results: Each terpene generates a unique pattern of degradation products resulting in a diverse array of oxidation and cyclization products. P-cymene was identified as a major product of terpene aging. Notably, no enantiomeric conversion was detected, suggesting that the formation of (-)-α-pinene in cannabis extracts, for example, originates from other terpenes.

Conclusion: Terpenes have different degradation rates, even though they are structurally similar. In addition, cultivar- and growth-condition-specific enantiomeric ratios were observed in C. sativa L., confirming that enantiomer production is species-specific and has to be considered for therapeutical applications.

目的:大麻因其药用和娱乐用途而闻名于世。随着以大麻为基础的药用产品在全球范围内日益合法化,对特性良好的产品的需求与日俱增。四氢大麻酚和大麻二酚等大麻素的稳定性已广为人知,但有关萜类化合物的化学稳定性和对映体稳定性的信息仍然很少。尽管萜烯也被认为具有药理活性,并可能有助于提高大麻的整体效果,但这方面的信息仍然很少:为了应对这些挑战,我们开发并验证了四种基于手性、极性和非极性气相色谱分离并结合 MS 或 FID 检测的分析方法。这些方法成功地分离和定量了 29 种萜烯,包括 13 种对映体和 5 种非对映体。此外,还对萜烯和真正的荠菜花及提取物进行了紫外线和热处理,以观察随着时间的推移可能发生的降解反应:结果:每种萜烯都会产生一种独特的降解产物模式,从而产生一系列不同的氧化和环化产物。经鉴定,对伞花烃是萜烯老化的主要产物。值得注意的是,没有检测到对映体的转化,这表明例如大麻提取物中 (-)-α蒎烯的形成源自其他萜烯:结论:尽管萜烯的结构相似,但它们的降解率却各不相同。此外,在 C. sativa L. 中观察到了与栽培品种和生长条件相关的对映体比率,这证实了对映体的产生具有物种特异性,在治疗应用中必须加以考虑。
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引用次数: 0
Quaternity method for integrated screening, separation, extraction optimization, and bioactivity evaluation of acetylcholinesterase inhibitors from Sophora flavescens Aiton. 从 Sophora flavescens Aiton 中综合筛选、分离、优化提取和评估乙酰胆碱酯酶抑制剂的四元方法。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-01 Epub Date: 2024-07-03 DOI: 10.1002/pca.3415
Yutong Zhang, Yuchi Zhang, Sainan Li, Chunming Liu, Jiaqi Liang, Yuyu Nong, Ming Chen, Ruijun Sun

Introduction: Sophora flavescens Aiton (Fabaceae), a ubiquitous plant species in Asia, contains a wide range of pharmacologically active compounds, such as flavonoids, with potential anti-Alzheimer's disease (anti-AD) effects.

Objectives: The objective of the study is to develop a quaternity method for the screening, isolation, extraction optimization, and activity evaluation of acetylcholinesterase (AChE)-inhibiting compounds from S. flavescens to realize high-throughput screening of active substances in traditional Chinese medicine and to provide experimental data for the development of anti-AD drugs.

Methods: With AChE as the target molecule, affinity ultrafiltration and liquid chromatography-mass spectrometry were applied to screen for potential inhibitors of the enzyme in S. flavescens. Orthogonal array experiments combined with the multi-objective Non-Dominated Sorting Genetic Algorithm III was used for the first time to optimize the process for extracting the active substances. Enzyme inhibition kinetics and molecular docking studies were performed to verify the potential anti-AD effects of the active compounds.

Results: Five AChE-inhibiting compounds were identified: kushenol I, kurarinone, sophoraflavanone G, isokurarinone, and kushenol E. These were successfully separated at purities of 72.88%, 98.55%, 96.86%, 96.74%, and 95.84%, respectively, using the n-hexane/ethyl acetate/methanol/water (4.0/5.0/4.0/5.0, v/v/v/v), n-hexane/ethyl acetate/methanol/water (5.0/5.0/6.0/4.0, v/v/v/v), and n-hexane/ethyl acetate/methanol/water (4.9/5.1/5.7/4.3, v/v/v/v) mobile phase systems. Enzyme inhibition kinetics revealed that kushenol E had the best inhibitory effect.

Conclusion: This study elucidates the mechanism of action of five active AChE inhibitors in S. flavescens and provides a theoretical basis for the screening and development of anti-AD and other therapeutic drugs.

简介Sophora flavescens Aiton(豆科)是一种在亚洲无处不在的植物物种,含有多种药理活性化合物,如黄酮类化合物,具有潜在的抗老年痴呆症(anti-Alzheimer's disease,anti-AD)作用:目的:本研究旨在开发一种四元化合物筛选、分离、提取优化和乙酰胆碱酯酶(AChE)抑制化合物活性评价的方法,以实现中药活性物质的高通量筛选,并为抗老年痴呆症药物的开发提供实验数据:方法:以乙酰胆碱酯酶(AChE)为目标分子,采用亲和超滤和液相色谱-质谱联用技术筛选出潜在的乙酰胆碱酯酶抑制剂。正交阵列实验结合多目标非支配排序遗传算法 III 首次用于优化提取活性物质的过程。通过酶抑制动力学和分子对接研究,验证了活性化合物潜在的抗逆转录酶作用:结果:共鉴定出 5 种 AChE 抑制化合物:苦参醇 I、苦参环酮、槐黄酮 G、异苦参环酮和苦参醇 E。在正己烷/乙酸乙酯/甲醇/水(4.0/5.0/4.0/5.0,v/v/v/v)、正己烷/乙酸乙酯/甲醇/水(5.0/5.0/6.0/4.0,v/v/v/v)和正己烷/乙酸乙酯/甲醇/水(4.9/5.1/5.7/4.3,v/v/v/v)流动相体系中,这些物质的分离纯度分别为 72.88%、98.55%、96.86%、96.74% 和 95.84%。酶抑制动力学显示,草酚 E 的抑制效果最好:本研究阐明了五种活性 AChE 抑制剂在 S. flavescens 中的作用机制,为筛选和开发抗厌氧菌酶和其他治疗药物提供了理论依据。
{"title":"Quaternity method for integrated screening, separation, extraction optimization, and bioactivity evaluation of acetylcholinesterase inhibitors from Sophora flavescens Aiton.","authors":"Yutong Zhang, Yuchi Zhang, Sainan Li, Chunming Liu, Jiaqi Liang, Yuyu Nong, Ming Chen, Ruijun Sun","doi":"10.1002/pca.3415","DOIUrl":"10.1002/pca.3415","url":null,"abstract":"<p><strong>Introduction: </strong>Sophora flavescens Aiton (Fabaceae), a ubiquitous plant species in Asia, contains a wide range of pharmacologically active compounds, such as flavonoids, with potential anti-Alzheimer's disease (anti-AD) effects.</p><p><strong>Objectives: </strong>The objective of the study is to develop a quaternity method for the screening, isolation, extraction optimization, and activity evaluation of acetylcholinesterase (AChE)-inhibiting compounds from S. flavescens to realize high-throughput screening of active substances in traditional Chinese medicine and to provide experimental data for the development of anti-AD drugs.</p><p><strong>Methods: </strong>With AChE as the target molecule, affinity ultrafiltration and liquid chromatography-mass spectrometry were applied to screen for potential inhibitors of the enzyme in S. flavescens. Orthogonal array experiments combined with the multi-objective Non-Dominated Sorting Genetic Algorithm III was used for the first time to optimize the process for extracting the active substances. Enzyme inhibition kinetics and molecular docking studies were performed to verify the potential anti-AD effects of the active compounds.</p><p><strong>Results: </strong>Five AChE-inhibiting compounds were identified: kushenol I, kurarinone, sophoraflavanone G, isokurarinone, and kushenol E. These were successfully separated at purities of 72.88%, 98.55%, 96.86%, 96.74%, and 95.84%, respectively, using the n-hexane/ethyl acetate/methanol/water (4.0/5.0/4.0/5.0, v/v/v/v), n-hexane/ethyl acetate/methanol/water (5.0/5.0/6.0/4.0, v/v/v/v), and n-hexane/ethyl acetate/methanol/water (4.9/5.1/5.7/4.3, v/v/v/v) mobile phase systems. Enzyme inhibition kinetics revealed that kushenol E had the best inhibitory effect.</p><p><strong>Conclusion: </strong>This study elucidates the mechanism of action of five active AChE inhibitors in S. flavescens and provides a theoretical basis for the screening and development of anti-AD and other therapeutic drugs.</p>","PeriodicalId":20095,"journal":{"name":"Phytochemical Analysis","volume":" ","pages":"52-67"},"PeriodicalIF":3.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141493027","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comprehensive phytochemical profiling of Phyllanthus emblica L. flowers on UHPLC/MS quadrupole time of flight, HPTLC, HPLC, and NMR analytical platforms reveals functional metabolites with potent anti-inflammatory effects in human (THP-1) macrophages. 在超高效液相色谱/质谱四极杆飞行时间、高效液相色谱、高效液相色谱和核磁共振分析平台上对余甘子花进行了全面的植物化学分析,发现了在人类(THP-1)巨噬细胞中具有强效抗炎作用的功能代谢物。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-01 Epub Date: 2024-08-19 DOI: 10.1002/pca.3433
Acharya Balkrishna, Sudeep Verma, Priya Rani M, Monali Joshi, Meenu Tomer, Vivek Gohel, Pardeep Nain, Rishabh Dev, Anurag Varshney

Introduction: Phyllanthus emblica L., renowned for its pharmacological benefits found in its fruits and leaves, has received considerable attention. However, there is a notable lack of research on its flowers, specifically on metabolite profiling and pharmacological activity.

Objective: The present study aims to delineate the phytochemical constituents of hydromethanolic extract of P. emblica flowers by ultra-high-performance liquid chromatography coupled with quadrupole time of flight mass spectrometry (UHPLC-QToF-MS), high-performance thin layer chromatography (HPTLC), high-performance liquid chromatography (HPLC), infrared and nuclear magnetic resonance spectroscopic methods and subsequent evaluation of its anti-inflammatory potential.

Materials and methods: The identification and characterization of phytochemicals in P. emblica flowers was performed by UHPLC/MS-QToF in both positive and negative ionization modes. Additionally, marker compounds present in flower extract were analyzed using HPTLC, HPLC, FT-IR, and NMR methods. The anti-inflammatory potential was evaluated in lipopolysaccharide-stimulated THP-1 macrophages by evaluating inflammatory biomarkers.

Results: UHPLC/MS-QToF analysis facilitated the identification of 51 compounds from P. emblica flowers including gallic acid derivatives, flavonoid glycosides, and tannins based on their fragmentation patterns and previous literature reports. Notably, the study also identified spermidine compounds for the first time in this species. Optimization of HPTLC and HPLC methods marked the presence of corilagin as major compound followed by FT-IR and NMR spectral methods. Moreover, treatment with hydromethanolic extract of P. emblica flowers resulted in decreased levels of proinflammatory cytokines, TNF-α, IL-1β, and IL-6, alongside modulation of nuclear factor-κB activity in lipopolysaccharide-induced THP-1 macrophages.

Conclusion: Chromatographic techniques in conjunction with spectral methods found robust prevalence in the identification of signature phytometabolites present in P. emblica flowers, which sets the basis for its anti-inflammatory potentials. The studies established a foundation for further exploration of potential applications of P. emblica flowers across various domains.

导言:大叶女贞(Phyllanthus emblica L.)因其果实和叶片的药理作用而闻名于世,受到了广泛关注。然而,对其花的研究,特别是代谢物分析和药理活性方面的研究却明显不足:本研究旨在通过超高效液相色谱-四极杆飞行时间质谱法(UHPLC-QToF-MS)、高效薄层色谱法(HPTLC)、高效液相色谱法(HPLC)、红外光谱法和核磁共振波谱法等方法,鉴定水乙醇提取物中的植物化学成分,并评估其抗炎潜力:采用超高效液相色谱/质谱-QToF正负离子模式鉴定和表征了余甘子花中的植物化学物质。此外,还使用 HPTLC、HPLC、FT-IR 和 NMR 方法分析了花提取物中的标记化合物。通过评估炎症生物标志物,评估了脂多糖刺激的 THP-1 巨噬细胞的抗炎潜力:结果:超高效液相色谱/质谱-QToF分析有助于根据没食子酸衍生物、黄酮苷和单宁酸的片段模式和以前的文献报道,从白花蛇舌草中鉴定出51种化合物。值得注意的是,该研究还首次在该物种中鉴定出了亚精胺化合物。对 HPTLC 和 HPLC 方法的优化表明,柯里拉京是主要化合物,其次是傅立叶变换红外光谱和核磁共振光谱方法。此外,用余甘子花的水乙醇提取物处理可降低促炎细胞因子 TNF-α、IL-1β 和 IL-6 的水平,同时调节脂多糖诱导的 THP-1 巨噬细胞中核因子-κB 的活性:结论:色谱技术与光谱方法相结合发现,在鉴定苦蘵花中存在的特征植物代谢物方面具有很强的普遍性,这为苦蘵花的抗炎潜力奠定了基础。这些研究为进一步探索白花蛇舌草在各个领域的潜在应用奠定了基础。
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引用次数: 0
Three-dimensional spectrochromatographic determination of chlorogenic acid in Melampyrum stenophyllum Boiss. extracts by parallel factor analysis. 通过平行因子分析三维光谱色谱法测定黄花梨提取物中的绿原酸
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-01 Epub Date: 2024-09-02 DOI: 10.1002/pca.3439
Zehra Ceren Ertekin, Ayşegül Köroğlu, Erdal Dinç

Introduction: Co-elution is a common challenge in phytochemical chromatography. Full chromatographic separation often requires extensive optimization, long analysis times, and excessive solvent use. A viable alternative could be mathematical elution of analytes using three-dimensional decomposition.

Objectives: This study aimed to develop a method to determine chlorogenic acid in Melampyrum stenophyllum Boiss. extracts without complete chromatographic separation, to validate the method, and to cross-validate assay results against a classical ultra-performance liquid chromatography (UPLC) method.

Methodology: Ultra-performance liquid chromatography-photodiode array (UPLC-PDA) spectrochromatograms were arranged into a three-way data cube with dimensions of time, wavelength, and sample and then decomposed using parallel factor analysis to reveal chromatographic, spectral, and concentration profiles. The chromatographic and spectral profiles were used to identify chlorogenic acid in overlapping signals. The relative concentration profile was used to quantify it in the plant extract. The assay results were statistically compared with those from an in-house classical UPLC method.

Results: Chlorogenic acid was co-eluted at 1.45 min and quantified as 16.11 mg per gram dry weight of Melampyrum stenophyllum extracts (SD = 0.28), despite significant interference in a 4-min runtime. The analytical validity was confirmed by recovery calculations from standard solutions and standard addition samples (RSD < 2%), and the t-test resulted in a p-value of 0.09 (α = 0.05), indicating no significant difference between the results obtained from mathematical elution and chromatographic separation.

Conclusion: Chlorogenic acid was quantified from plant material accurately despite the co-elution. Validation and cross-validation results support the method's applicability.

简介:共洗脱是植物化学色谱中常见的难题。完全的色谱分离往往需要大量的优化工作、较长的分析时间和过量的溶剂使用。一种可行的替代方法是利用三维分解法对分析物进行数学洗脱:本研究旨在开发一种无需完全色谱分离即可测定叶枯素提取物中绿原酸含量的方法,验证该方法的有效性,并将测定结果与经典的超高效液相色谱(UPLC)方法进行交叉验证:方法:将超高效液相色谱-光电二极管阵列(UPLC-PDA)光谱色谱图排列成以时间、波长和样品为维度的三维数据立方体,然后使用并行因子分析法进行分解,以揭示色谱、光谱和浓度曲线。色谱和光谱图谱用于识别重叠信号中的绿原酸。相对浓度曲线用于量化植物提取物中的绿原酸。检测结果与内部经典 UPLC 方法的结果进行了统计比较:结果:绿原酸在 1.45 分钟时发生共沉淀,定量为每克干重 16.11 毫克(SD = 0.28),尽管在 4 分钟的运行时间内存在明显干扰。标准溶液和标准添加样品的回收率计算(RSD 结论)证实了分析的有效性:尽管存在共洗脱现象,绿原酸仍能从植物材料中准确定量。验证和交叉验证结果支持该方法的适用性。
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引用次数: 0
Fast and Efficient Screening and Separation Based on AUF-MS Combined With Molecular Docking Technology and Network Pharmacology Method for Potential Xanthine Oxidase Inhibitors From Pinelliae Rhizoma Praeparatum. 基于AUF-MS结合分子对接技术和网络药理学方法的半夏黄嘌呤氧化酶潜在抑制剂的快速高效筛选分离
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-30 DOI: 10.1002/pca.3485
Qiang Liu, Yuyu Nong, Sainan Li, Yang Zhou, Xuanlin Liu, Duo Liu, Yanjie Li

Introduction: Studies show that Pinelliae Rhizoma Praeparatum (PRP) has some pharmacological effects in enhancing immunity and against gout.

Objectives: A mathematical model was created for extraction process optimization, analysis and identification, activity screening, and isolation and purification; moreover, the mechanism of action was studied.

Methods: First, the extraction of PRP was investigated using the gray wolf optimization mathematical regression model; the extraction variables were optimized to maximize the yield. Second, we used network pharmacological analysis to predict potential targets for PRP in treating gout; xanthine oxidase inhibitors (XODIs) were rapidly screened using AUF-MS and enzyme-catalyzed reaction kinetics. The potential antigout effects of the obtained active substances were verified using molecular docking and molecular dynamics simulation analysis. Finally, with activity screening as the guide, an HSCCC method combined with consecutive injection using the UNIFAC mathematical model and semipreparative HSCCC was successfully developed for the separation and purification of XODIs.

Results: The results verified that uridine, guanosine, adenosine, liquiritin, and liquiritigenin of PRP exhibited high biological affinity toward XOD.

Conclusion: This study clarifies the mechanisms of action of a medicinal plant of interest at the molecular level and can provide more opportunities for the discovery and development of new therapeutic drugs from other food resources.

简介:研究表明半夏具有增强免疫力和抗痛风的药理作用。目的:建立提取工艺优化、分析鉴定、活性筛选、分离纯化的数学模型;并对其作用机理进行了研究。方法:首先,采用灰狼优化数学回归模型对PRP的提取进行研究;通过优化提取参数,使产率达到最高。其次,我们使用网络药理学分析来预测PRP治疗痛风的潜在靶点;利用AUF-MS和酶催化反应动力学快速筛选黄嘌呤氧化酶抑制剂(XODIs)。通过分子对接和分子动力学模拟分析验证了所得活性物质的潜在抗痛风作用。最后,以活性筛选为指导,利用UNIFAC数学模型和半制备型HSCCC,成功建立了连续进样的HSCCC方法,用于XODIs的分离纯化。结果:证实PRP的尿苷、鸟苷、腺苷、利尿素和利尿素对XOD具有较高的生物亲和力。结论:本研究在分子水平上阐明了感兴趣的药用植物的作用机制,为从其他食物资源中发现和开发新的治疗药物提供了更多的机会。
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引用次数: 0
Integrating UPLC-MS/MS Bioinformatics and In Vivo Experiments Validation to Elucidate the Mechanism of Wenzi Jiedu Decoction in Suppressing Colorectal Cancer. 结合UPLC-MS/MS生物信息学和体内实验验证阐明文子解毒汤抑制结直肠癌的机制。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-28 DOI: 10.1002/pca.3495
Tianqing Sang, Aoshengxiong Liang, Hongli Zhou, Wenli Qiu, Lijing Shi, Hongguang Zhou

Objectives: We used ultra-performance liquid chromatography tandem mass spectrometry (UPLC-MS/MS), bioinformatics, and in vivo experiments to study the anti-colorectal cancer (CRC) effects of Wenzi Jiedu Decoction (WJD).

Methods: Detected the main components of WJD by UPLC-MS/MS. Obtained WJD targets and CRC targets through the open source database. Analyzed the WJD-CRC targets from a macro perspective by PPI, GO, and KEGG analyses. Validated bioinformatics findings by molecular docking and animal experiments.

Results: This study obtained 91 active compounds and 240 targets of WJD. Intersection with CRC genes (GSE32323 388 DEGs, GSE 215510 1253 DEGs), 36 WJD-CRC common targets were obtained. PPI and enrichment analyses indicated WJD exerted anti-CRC effects mainly through the chemokine signaling pathway and apoptosis. Quercetin, Luteolin, Kaempferol, Formononetin, Stigmasterol, and Hederagenin were the main compounds of WJD. CXCL8, BCL-2, BAX, BCL2L1, CASP3, AKT1, and TP53 were the core targets of WJD-CRC. Bulk molecular docking showed that core WJD compounds had good docking activity with WJD-CRC targets. Animal experiments had shown the tumor inhibition rate of the WJD group was 36.53%. WJD could regulate the ratio of CD4+, CD8+, and CD4+/CD8+, reduce the expression of CXCL8, and BCL-2, and increase the expression of BAX.

Conclusions: This study indicated that the potential mechanism of WJD in the prevention and treatment of CRC had the characteristics of the multi-target, multi-path, and multi-system mechanisms, which were mainly related to the regulation of chemokines and the promotion of apoptosis.

目的:采用超高效液相色谱-串联质谱(UPLC-MS/MS)、生物信息学、体内实验等方法研究温子解毒汤的抗结直肠癌(CRC)作用。方法:采用超高效液相色谱-质谱联用法检测白参的主要成分。通过开源数据库获取WJD目标和CRC目标。通过PPI、GO和KEGG分析,从宏观角度分析WJD-CRC的靶点。通过分子对接和动物实验验证了生物信息学的发现。结果:共获得91个有效化合物和240个靶点。与CRC基因(GSE32323 388 DEGs, GSE 215510 1253 DEGs)交叉,获得36个WJD-CRC共同靶点。PPI和富集分析表明,WJD主要通过趋化因子信号通路和细胞凋亡发挥抗crc作用。槲皮素、木犀草素、山奈酚、刺芒柄花素、豆甾醇和Hederagenin是WJD的主要成分。CXCL8、BCL-2、BAX、BCL2L1、CASP3、AKT1、TP53是WJD-CRC的核心靶点。整体分子对接表明,核心WJD化合物与WJD- crc靶点具有良好的对接活性。动物实验表明,WJD组肿瘤抑制率为36.53%。WJD可调节CD4+、CD8+及CD4+/CD8+比值,降低CXCL8、BCL-2表达,提高BAX表达。结论:本研究提示WJD预防和治疗结直肠癌的潜在机制具有多靶点、多途径、多系统机制的特点,主要与趋化因子的调控和细胞凋亡的促进有关。
{"title":"Integrating UPLC-MS/MS Bioinformatics and In Vivo Experiments Validation to Elucidate the Mechanism of Wenzi Jiedu Decoction in Suppressing Colorectal Cancer.","authors":"Tianqing Sang, Aoshengxiong Liang, Hongli Zhou, Wenli Qiu, Lijing Shi, Hongguang Zhou","doi":"10.1002/pca.3495","DOIUrl":"https://doi.org/10.1002/pca.3495","url":null,"abstract":"<p><strong>Objectives: </strong>We used ultra-performance liquid chromatography tandem mass spectrometry (UPLC-MS/MS), bioinformatics, and in vivo experiments to study the anti-colorectal cancer (CRC) effects of Wenzi Jiedu Decoction (WJD).</p><p><strong>Methods: </strong>Detected the main components of WJD by UPLC-MS/MS. Obtained WJD targets and CRC targets through the open source database. Analyzed the WJD-CRC targets from a macro perspective by PPI, GO, and KEGG analyses. Validated bioinformatics findings by molecular docking and animal experiments.</p><p><strong>Results: </strong>This study obtained 91 active compounds and 240 targets of WJD. Intersection with CRC genes (GSE32323 388 DEGs, GSE 215510 1253 DEGs), 36 WJD-CRC common targets were obtained. PPI and enrichment analyses indicated WJD exerted anti-CRC effects mainly through the chemokine signaling pathway and apoptosis. Quercetin, Luteolin, Kaempferol, Formononetin, Stigmasterol, and Hederagenin were the main compounds of WJD. CXCL8, BCL-2, BAX, BCL2L1, CASP3, AKT1, and TP53 were the core targets of WJD-CRC. Bulk molecular docking showed that core WJD compounds had good docking activity with WJD-CRC targets. Animal experiments had shown the tumor inhibition rate of the WJD group was 36.53%. WJD could regulate the ratio of CD4+, CD8+, and CD4+/CD8+, reduce the expression of CXCL8, and BCL-2, and increase the expression of BAX.</p><p><strong>Conclusions: </strong>This study indicated that the potential mechanism of WJD in the prevention and treatment of CRC had the characteristics of the multi-target, multi-path, and multi-system mechanisms, which were mainly related to the regulation of chemokines and the promotion of apoptosis.</p>","PeriodicalId":20095,"journal":{"name":"Phytochemical Analysis","volume":" ","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-12-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142896845","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comparison of Plant Genomic DNA Extraction Kits Using the Proofman-LMTIA Amplification Assay. 使用Proofman-LMTIA扩增试验的植物基因组DNA提取试剂盒的比较。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-28 DOI: 10.1002/pca.3497
Wei Yao, Yajie Wang, Dan Zhou, Jinxin Liu, Chunmei Song, Xiaohua Zhang, Deguo Wang, Yao Wang

Introduction: The extraction of DNA is the basis of molecular biology research. The quality of the extracted DNA is one of the key factors for the success of molecular biology experiments.

Objective: To select a suitable DNA extraction method for Chinese medicinal herbs and seeds.

Methods: In this experiment, four commercial DNA extraction kits were used to extract the genomic DNA (gDNA) from the Pinellia ternata (Thunb.) Breit. powder; Arisaema amurense Maxim. powder as well as the seeds of Glycine max (L.) Merr. On the one hand, the concentration and purity of DNA extracted by these four kits were compared. On the other hand, nucleic acid amplification experiments were performed on three samples extracted by each of the four kits by Proofman-LMTIA methods, which is a novel nucleic acid isothermal amplification technique. The concentration and purity of DNA extracted by different kits were used to determine which methods were suitable for the dry powder of Chinese herbal medicines and seeds. The efficiency of the amplification curve to show whether the extracted DNA can be used in nucleic acid amplification experiments.

Results: The results showed that the Proofman-LMTIA methods were of high specificity and the optimal reaction temperatures were 63, 59, and 59°C for P. ternata (Thunb.) Makino; A. amurense Maxim. and G. max (L.) Merr., respectively. The concentration and purity of the gDNAs extracted with all kits were within the acceptable ranges; meanwhile, the amplification of the gDNA extracted by Kit II was of the highest efficiency.

Conclusion: In this experiment, the principle, concentration, purity, and time taken for extracting DNA with four kits were compared. The automated extraction kit based on the magnetic method is suitable for extracting DNA from Chinese medicinal herbs and seeds. The extracted DNA is suitable for nucleic acid amplification detection.

DNA的提取是分子生物学研究的基础。提取DNA的质量是分子生物学实验成功与否的关键因素之一。目的:选择合适的中药材及其种子DNA提取方法。方法:本实验采用4种商用DNA提取试剂盒提取半夏(Pinellia ternata, Thunb)的基因组DNA (gDNA)。布莱特。粉;格言。甘氨酸(L.)的粉末和种子稳定。一方面比较了这四种试剂盒提取的DNA的浓度和纯度。另一方面,采用新型核酸等温扩增技术Proofman-LMTIA方法,对4种试剂盒各提取的3个样品进行核酸扩增实验。通过不同试剂盒提取DNA的浓度和纯度,确定适合中药材干粉和种子干粉提取的方法。扩增曲线的效率显示提取的DNA是否可以用于核酸扩增实验。结果:结果表明,Proofman-LMTIA方法特异性高,最佳反应温度分别为63℃、59℃和59℃。牧野;A.格言;G. max (L.)稳定。,分别。所有试剂盒提取的dna浓度和纯度均在可接受范围内;同时,Kit II提取的gDNA扩增效率最高。结论:本实验比较了四种试剂盒提取DNA的原理、浓度、纯度和所需时间。磁法自动提取试剂盒适用于中药材和种子DNA的提取。提取的DNA适合核酸扩增检测。
{"title":"Comparison of Plant Genomic DNA Extraction Kits Using the Proofman-LMTIA Amplification Assay.","authors":"Wei Yao, Yajie Wang, Dan Zhou, Jinxin Liu, Chunmei Song, Xiaohua Zhang, Deguo Wang, Yao Wang","doi":"10.1002/pca.3497","DOIUrl":"https://doi.org/10.1002/pca.3497","url":null,"abstract":"<p><strong>Introduction: </strong>The extraction of DNA is the basis of molecular biology research. The quality of the extracted DNA is one of the key factors for the success of molecular biology experiments.</p><p><strong>Objective: </strong>To select a suitable DNA extraction method for Chinese medicinal herbs and seeds.</p><p><strong>Methods: </strong>In this experiment, four commercial DNA extraction kits were used to extract the genomic DNA (gDNA) from the Pinellia ternata (Thunb.) Breit. powder; Arisaema amurense Maxim. powder as well as the seeds of Glycine max (L.) Merr. On the one hand, the concentration and purity of DNA extracted by these four kits were compared. On the other hand, nucleic acid amplification experiments were performed on three samples extracted by each of the four kits by Proofman-LMTIA methods, which is a novel nucleic acid isothermal amplification technique. The concentration and purity of DNA extracted by different kits were used to determine which methods were suitable for the dry powder of Chinese herbal medicines and seeds. The efficiency of the amplification curve to show whether the extracted DNA can be used in nucleic acid amplification experiments.</p><p><strong>Results: </strong>The results showed that the Proofman-LMTIA methods were of high specificity and the optimal reaction temperatures were 63, 59, and 59°C for P. ternata (Thunb.) Makino; A. amurense Maxim. and G. max (L.) Merr., respectively. The concentration and purity of the gDNAs extracted with all kits were within the acceptable ranges; meanwhile, the amplification of the gDNA extracted by Kit II was of the highest efficiency.</p><p><strong>Conclusion: </strong>In this experiment, the principle, concentration, purity, and time taken for extracting DNA with four kits were compared. The automated extraction kit based on the magnetic method is suitable for extracting DNA from Chinese medicinal herbs and seeds. The extracted DNA is suitable for nucleic acid amplification detection.</p>","PeriodicalId":20095,"journal":{"name":"Phytochemical Analysis","volume":" ","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-12-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142896844","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Spatial Distribution and Comparative Analysis of Differential Metabolites in Curcuma longa L. Roots and Rhizomes Using UHPLC-Q-Orbitrap HRMS Combined With DESI-MSI. UHPLC-Q-Orbitrap结合DESI-MSI对姜黄根和根茎差异代谢物的空间分布及比较分析
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-26 DOI: 10.1002/pca.3493
Jin Wang, Ying Zhu, Chuyue Wu, Qinwan Huang

Introduction: The roots and rhizomes of Curcuma longa L. serve as distinct traditional Chinese medicines with varying therapeutic effects, likely attributed to differences in the accumulation and distribution of metabolites in these parts.

Objective: The study aims to investigate the differences and spatial distribution patterns of metabolites in C. longa L. roots and rhizomes.

Methods: Metabolite analysis of roots and rhizomes was conducted using ultra-high-performance liquid chromatography-quadruple orbitrap high-resolution mass spectrometry (UHPLC-Q-Orbitrap HRMS) combined with desorption electrospray ionization mass spectrometry imaging (DESI-MSI). Using principal component analysis (PCA) and orthogonal partial least squares discriminant analysis (OPLS-DA) to screen for differential metabolites. The relative contents of differential metabolites were visualized using heat maps. Additionally, the spatial distribution of differential metabolites was analyzed based on DESI-MSI.

Results: A total of 49 main chemical components were identified in roots and rhizomes using UHPLC-Q-Orbitrap HRMS. Through nontargeted metabolomics analysis combining UHPLC-Q-Orbitrap HRMS with PCA and OPLS-DA, 24 differential markers were identified; Additionally, using DESI-MSI alongside PCA and OPLS-DA, 18 differential markers were selected. Based on the DESI-MSI results, curcuminoids and sesquiterpenoids, including bisdemethoxycurcumin, demethoxycurcumin, furanodienone, furanogermenone, furanodiene, β-elemene, and curzerene, were more abundant in the rhizomes compared to the roots. And these differential compounds exhibited spatial distribution differences in the epidermis, phloem, and xylem between the roots and rhizomes.

Conclusion: The metabolomics analysis using UHPLC-Q-Orbitrap HRMS combined with DESI-MSI suggest differences in the accumulation and spatial distribution of metabolites in C. longa L. roots and rhizomes, possibly related to the biosynthesis of secondary metabolites.

姜黄的根和根茎是不同的中药,治疗效果不同,可能与这些部位代谢物的积累和分布不同有关。目的:研究龙葵根、根茎代谢产物的差异及空间分布规律。方法:采用超高效液相色谱-四重轨道阱高分辨率质谱法(UHPLC-Q-Orbitrap HRMS)结合解吸电喷雾质谱法(DESI-MSI)对根和根茎进行代谢物分析。采用主成分分析(PCA)和正交偏最小二乘判别分析(OPLS-DA)筛选差异代谢物。用热图显示不同代谢物的相对含量。此外,基于DESI-MSI分析了差异代谢物的空间分布。结果:采用UHPLC-Q-Orbitrap高效液相色谱法,从根和根茎中鉴定出49种主要化学成分。通过UHPLC-Q-Orbitrap HRMS联合PCA和OPLS-DA进行非靶向代谢组学分析,鉴定出24个差异标志物;此外,将DESI-MSI与PCA和OPLS-DA结合使用,选择了18个差异标记。根据DESI-MSI结果,姜黄素和倍半萜类物质,包括双去甲氧基姜黄素、去甲氧基姜黄素、呋喃二烯酮、呋喃二烯酮、呋喃二烯、β-榄香烯和莪术烯,在根茎中的含量高于根。这些差异化合物在根和根的表皮、韧皮部和木质部表现出空间分布上的差异。结论:利用UHPLC-Q-Orbitrap HRMS结合DESI-MSI进行代谢组学分析,发现龙骨根和根茎中代谢物的积累和空间分布存在差异,可能与次生代谢物的生物合成有关。
{"title":"Spatial Distribution and Comparative Analysis of Differential Metabolites in Curcuma longa L. Roots and Rhizomes Using UHPLC-Q-Orbitrap HRMS Combined With DESI-MSI.","authors":"Jin Wang, Ying Zhu, Chuyue Wu, Qinwan Huang","doi":"10.1002/pca.3493","DOIUrl":"https://doi.org/10.1002/pca.3493","url":null,"abstract":"<p><strong>Introduction: </strong>The roots and rhizomes of Curcuma longa L. serve as distinct traditional Chinese medicines with varying therapeutic effects, likely attributed to differences in the accumulation and distribution of metabolites in these parts.</p><p><strong>Objective: </strong>The study aims to investigate the differences and spatial distribution patterns of metabolites in C. longa L. roots and rhizomes.</p><p><strong>Methods: </strong>Metabolite analysis of roots and rhizomes was conducted using ultra-high-performance liquid chromatography-quadruple orbitrap high-resolution mass spectrometry (UHPLC-Q-Orbitrap HRMS) combined with desorption electrospray ionization mass spectrometry imaging (DESI-MSI). Using principal component analysis (PCA) and orthogonal partial least squares discriminant analysis (OPLS-DA) to screen for differential metabolites. The relative contents of differential metabolites were visualized using heat maps. Additionally, the spatial distribution of differential metabolites was analyzed based on DESI-MSI.</p><p><strong>Results: </strong>A total of 49 main chemical components were identified in roots and rhizomes using UHPLC-Q-Orbitrap HRMS. Through nontargeted metabolomics analysis combining UHPLC-Q-Orbitrap HRMS with PCA and OPLS-DA, 24 differential markers were identified; Additionally, using DESI-MSI alongside PCA and OPLS-DA, 18 differential markers were selected. Based on the DESI-MSI results, curcuminoids and sesquiterpenoids, including bisdemethoxycurcumin, demethoxycurcumin, furanodienone, furanogermenone, furanodiene, β-elemene, and curzerene, were more abundant in the rhizomes compared to the roots. And these differential compounds exhibited spatial distribution differences in the epidermis, phloem, and xylem between the roots and rhizomes.</p><p><strong>Conclusion: </strong>The metabolomics analysis using UHPLC-Q-Orbitrap HRMS combined with DESI-MSI suggest differences in the accumulation and spatial distribution of metabolites in C. longa L. roots and rhizomes, possibly related to the biosynthesis of secondary metabolites.</p>","PeriodicalId":20095,"journal":{"name":"Phytochemical Analysis","volume":" ","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-12-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142896265","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Phytochemical Analysis
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