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Energy transfers between the B850 antennas: hybrid hierarchical equation approach. B850天线之间的能量传输:混合层次方程方法。
IF 3.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2025-11-17 DOI: 10.1007/s11120-025-01184-z
Vladimir I Novoderezhkin

We model the energy transfers between two B850 antenna units using the hybrid hierarchical equation (HEOM) method, where intra-B850 dynamics is evaluated nonperturbatively using HEOM, whereas inter-B850 transfers are treated by the generalized Förster theory. To account for a conformation-induced energetic disorder we use a realistic model emerging from a quantitative explanation of the single molecule spectral fluctuations in the B850 antenna. The disorder produces a variety of configurations including realizations where the exciton states are predominantly localized at the red-shifted sites. A slow detrapping of excitation from the red states can compete with the transfers to the adjacent B850 unit, thus slowing down the whole equilibration dynamics. In order to highlight the interplay between intra-B850 dynamics and migration to neighboring B850 complex we analyze the diversity of scenarios produced by specific disorder patterns within both donor and acceptor units.

我们使用混合层次方程(HEOM)方法对两个B850天线单元之间的能量传递进行建模,其中使用HEOM方法对B850内部动力学进行非扰动评估,而B850之间的传递则由广义Förster理论处理。为了解释构象引起的能量紊乱,我们使用了一个从B850天线单分子光谱波动的定量解释中出现的现实模型。这种无序产生了多种构型,包括激子态主要定位于红移位点的实现。从红态中缓慢去除激励会与向邻近的B850单元的转移相竞争,从而减慢整个平衡动力学。为了突出B850内部动态和向邻近B850复合体迁移之间的相互作用,我们分析了供体和受体单位内特定紊乱模式产生的情景多样性。
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引用次数: 0
Quinol C-methyltransferases from extant species of early cyanobacterial lineages shed light on the emergence of plastoquinone in oxygenic phototrophs. 现存的早期蓝藻谱系的喹诺c -甲基转移酶为富氧光养生物中质体醌的出现提供了线索。
IF 3.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2025-11-12 DOI: 10.1007/s11120-025-01180-3
Gabriella Dickinson, Lauren R Stutts, Scott Latimer, Nathan Smith, Zhaniya Batyrshina, Monika Kula-Maximenko, Ireneusz Ślesak, Anna K Block, Mark A Wilson, Gilles J Basset

Cyanobacteria and plastids harbor two prenylated quinones that serve as vital photosynthetic cofactors. One is a naphthoquinone (phylloquinone or menaquinone depending on the species), the naphthalene ring of which is always methylated in ortho of the prenyl chain. The other one is a benzoquinone, called plastoquinone-9, the benzenoid ring of which is, in contrast, never methylated at this position. In oxygenic phototrophs, such an arrangement is thought to have driven the evolution and retention of unique quinol C-methyltransferases that act exclusively on naphthoquinol substrates. Here, we identified quinol C-methyltransferases in two extant taxa of early cyanobacterial lineages, Gloeobacter violaceus and Synechococcus sp. JA-2-3B'a, that did not discriminate between naphthoquinol and benzoquinol substrates when these enzymes were expressed in Escherichia coli. Quinone analysis showed, however, that G. violaceus extracts did not contain any detectable amounts of methyl-plastoquinone-9. Furthermore, functional complementation assays in the cyanobacterium Synechocystis sp. PCC 6803 revealed that G. violaceus and S. sp. JA-2-3B'a quinol C-methyltransferases displayed either strict or marked substrate preference for demethyl-phylloquinol. Taken together, these data suggest that G. violaceus and S. sp. JA-2-3B'a quinol C-methyltransferases are the remnants of a promiscuous enzyme present during the emergence of plastoquinone as a photosynthetic electron carrier.

蓝藻和质体含有两种戊酰化醌,它们是至关重要的光合辅助因子。一种是萘醌(叶绿醌或甲基萘醌取决于其种类),其萘环总是在戊基链的邻位甲基化。另一种是苯醌,叫做质体醌-9,相比之下,它的苯环在这个位置上从未甲基化。在富氧光养生物中,这种排列被认为推动了独特的喹诺c -甲基转移酶的进化和保留,这种酶只作用于萘喹诺底物。在这里,我们在两个现存的早期蓝藻谱系分类群,Gloeobacter violaceus和Synechococcus sp. JA-2-3B'a中鉴定了喹啉c -甲基转移酶,当这些酶在大肠杆菌中表达时,它们不区分萘醌和苯醌。然而,醌分析表明,紫罗兰提取物不含任何可检测量的甲基-质体醌-9。此外,对蓝细菌Synechocystis sp. PCC 6803的功能互补分析表明,G. violaceus和S. sp. JA-2-3B'a醌醇c -甲基转移酶对二甲基叶绿喹啉表现出严格或显著的底物偏好。综上所述,这些数据表明,G. violaceus和S. sp. JA-2-3B'a喹诺酮c -甲基转移酶是在质体醌作为光合电子载体出现期间出现的一种混杂酶的残余。
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引用次数: 0
Investigating the role of PGR5 and PGRL1 in photosynthetic acclimation to salt stress in Chlamydomonas reinhardtii. 研究PGR5和PGRL1在莱茵衣藻光合适应盐胁迫中的作用。
IF 3.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2025-11-05 DOI: 10.1007/s11120-025-01179-w
Siva Naga Sai Damaraju, Ranay Mohan Yadav, Namrata Dubey, Pavithra Ramachandran, Jyoti Ranjan Rath, Jerome Xavier Gunasekaran, Shriya Sharma, Rajagopal Subramanyam

In this study, we aimed to understand the role of cyclic electron transport (CET) in the acclimation process in response to high salinity stress by comparing wild-type Chlamydomonas reinhardtii with CET deficient mutants, Proton Gradient Regulation 5 (PGR5), and Proton Gradient Regulation Like 1 (PGRL1). Cells grown in photoautotrophic conditions under salt stress resulted in a primary reduction in growth and chlorophyll fluorescence, as well as OJIP transient kinetics under salt stress, indicative of diminished photochemical efficiency. Notably, all strains exhibited a decrease in the variable fluorescence, and the non-photochemical quenching was accompanied by an increase in non-regulated energy dissipation. Additionally, salt treatment resulted in a reduction in total chlorophyll content and a related increase in carotenoid levels like violaxanthin, zeaxanthin, and lutein, and these levels were more pronounced in the pgr5. These alterations are likely linked to enhanced reactive oxygen species (ROS) generation under salt stress. The mutants were more sensitive to ROS and showed more carotenoid content than the wild type, suggesting a compensatory photoprotective mechanism. The circular dichroism data showed that the salt stress caused changes in pigment-pigment and pigment-protein interactions, which were more significant in mutants. When cells are exposed to high salt, there is a dynamic change in the core proteins, but light-harvesting complexes and antenna proteins of photosystem (PS) I and PSII are not much affected. Further, changes in cell morphology and thylakoid membrane organization were also observed in high salt stress. These data indicate PSI remodeling, defined here as stress-induced dissociation/rearrangement of PSI-LHCI(-LHCII) super complexes, reductions in PsaA/B abundance consistent with PSI core destabilization, and loss of thylakoid macro-domain order, particularly pronounced in pgr5.

在本研究中,我们旨在通过比较野生型莱茵衣藻与环电子传递(CET)缺陷突变体、质子梯度调节5 (PGR5)和质子梯度调节样1 (PGRL1),了解环电子传递(CET)在高盐度胁迫下的驯化过程中的作用。在盐胁迫下光自养条件下生长的细胞导致生长和叶绿素荧光以及盐胁迫下OJIP瞬态动力学的初步减少,表明光化学效率降低。值得注意的是,所有菌株都表现出可变荧光的减少,非光化学猝灭伴随着非调节能量耗散的增加。此外,盐处理导致总叶绿素含量降低,类胡萝卜素水平(如紫黄质、玉米黄质和叶黄素)相应增加,这些水平在pgr5中更为明显。这些变化可能与盐胁迫下活性氧(ROS)生成的增强有关。突变体对活性氧更敏感,类胡萝卜素含量高于野生型,表明其具有代偿性光保护机制。圆二色性数据表明,盐胁迫引起色素-色素和色素-蛋白质相互作用的变化,在突变体中更为显著。当细胞暴露于高盐环境时,核心蛋白发生动态变化,但光系统(PS) I和PSII的光收集复合物和天线蛋白受影响不大。此外,在高盐胁迫下,细胞形态和类囊体膜组织也发生了变化。这些数据表明PSI重塑,这里定义为应力诱导的PSI- lhci (-LHCII)超级复合物的解离/重排,PsaA/B丰度的减少与PSI核心不稳定一致,以及类囊体宏观结构域秩序的丧失,在pgr5中尤其明显。
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引用次数: 0
Photophysical model of primary charge separation in green algal photosystem I based on combined analysis of time-resolved absorption and fluorescence spectra. 基于时间分辨吸收光谱和荧光光谱联合分析的绿藻光系统一次电荷分离的光物理模型。
IF 3.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2025-10-30 DOI: 10.1007/s11120-025-01176-z
Wojciech Giera, Krzysztof Gibasiewicz
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引用次数: 0
Biochemical characterization of PSI-FCPI and FCP complexes from a haptophyte Pavlova (Pavlovophyceae). 一株巴甫洛夫植物PSI-FCPI和FCP复合物的生化特性研究。
IF 3.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2025-10-27 DOI: 10.1007/s11120-025-01175-0
Hibiki Q Ito, Kano N Toyoizumi, Takehiro Suzuki, Akihiko Kanamoto, Tomohisa Hasunuma, Naoshi Dohmae, Ryo Nagao
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引用次数: 0
Photosynthetic response of the invasive weed Chromolaena odorata to glyphosate. 入侵杂草臭草对草甘膦的光合反应。
IF 3.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2025-10-24 DOI: 10.1007/s11120-025-01177-y
K K Naidoo, G Naidoo
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引用次数: 0
Revisiting the QA model of chlorophyll-a fluorescence induction: new perspectives to monitor the photochemical activity and structural dynamics of photosystem II. 叶绿素-a荧光诱导QA模型的重新审视:光系统II光化学活性和结构动力学监测的新视角
IF 3.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2025-10-23 DOI: 10.1007/s11120-025-01178-x
Győző Garab

The technique of chlorophyll-a fluorescence induction (ChlF) is widely used in plant biology. The 'mainstream', so-called QA model of ChlF, posits that the reaction centers (RCs) of Photosystem-II (PSII) exist in two states, quenched (Fo) or open (PSIIO), and unquenched (Fm) or closed (PSIIC), containing the primary quinone acceptor, QA, in oxidized and reduced state, respectively; and that the quantum yield of PSII photochemistry of a dark-adapted sample is Y(II) = Fv/Fm, where Fv=Fm-Fo. The widespread application of ChlF, with user-friendly instruments, and the use of the QA model, have substantially contributed to our understanding of the operation of the photosynthetic machineries under different environmental conditions. However, recent experimental data - multiple light-induced fluorescence increments in PSIIC; the complex, pH and temperature dependent kinetic and spectral features of key ChlF parameters; twith enhanced stabilization of the charges - cannot be reconciled with the QA model. These features are explained by subtle conformational transitions driven by stationary and transient electric fields and associated dielectric relaxation processes. This interpretation, while invites further studies, places the hitherto unknown structural and functional plasticity of the RC matrix in the context of its physiological significance.

叶绿素-a荧光诱导技术在植物生物学中有着广泛的应用。ChlF的“主流”QA模型假设光系统ii (PSII)的反应中心(rc)存在两种状态,即猝灭(Fo)或开放(PSIIO)和未猝灭(Fm)或关闭(PSIIC),其中含有醌一级受体QA,分别处于氧化和还原状态;暗适应样品的PSII光化学量子产率为Y(II) = Fv/Fm,其中Fv=Fm- fo。ChlF的广泛应用,以及用户友好的仪器和QA模型的使用,极大地促进了我们对不同环境条件下光合机制运作的理解。然而,最近的实验数据- PSIIC的多重光诱导荧光增量;ChlF关键参数的配合物、pH和温度依赖性动力学和光谱特征;与电荷的增强稳定性-不能与QA模型相协调。这些特征是由静止和瞬态电场以及相关的介电弛豫过程驱动的微妙构象转变所解释的。这一解释虽然需要进一步研究,但将迄今未知的RC基质的结构和功能可塑性置于其生理意义的背景下。
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引用次数: 0
Molecular and structural insights into neurosporene accumulation in Rhodobacter sphaeroides G1C. 球形红杆菌G1C神经孢烯积累的分子和结构研究。
IF 3.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2025-10-20 DOI: 10.1007/s11120-025-01174-1
Yu-Lu Wu, Guang-Lei Wang, Xiang-Ping Wang, Xing-Yu Yue, Mei-Juan Zou, Zheng-Yu Wang-Otomo, Michael T Madigan, Richard J Cogdell, Long-Jiang Yu
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引用次数: 0
Establishment of a low-cost photosynthesis measurement system based on a single-board microcomputer and CO2 sensors. 基于单片机和CO2传感器的低成本光合作用测量系统的建立。
IF 3.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2025-10-14 DOI: 10.1007/s11120-025-01170-5
Hiroo Takaragawa, Tomoki Asahi, Muneshi Mitsuoka, Eizo Taira, Yoshinobu Kawamitsu

Leaf photosynthetic rate serves as a growth indicator in plant science; however, the high cost (exceeding USD 70,000) of traditional measurement system is the main concern when making photosynthesis measurements of interest to a wide range of users. Recently, the availability of inexpensive environmental sensors and single-board microcomputers has increased substantially. In this study, we selected CO2 sensors based on a comparative analysis of four cost-effective sensors. The economical K30 sensor demonstrated a superior response to CO2 fluctuations, compared to the other tested low-cost sensors, and exhibited noise-free stability relative to the values recorded by the high-precision system (LI-850). A closed-chamber system was constructed, incorporating the K30 sensor into a self-made chamber controlled by a single-board microcomputer. The materials for the demo device incurred an approximate cost of USD 200, resulting in a low overall expense. Leaf photosynthesis measurements for sugarcane germplasm from the demo device were compared with those from a standard open system (LI-6400), revealing a significant correlation (p < 0.001). The root mean square error (RMSE) and relative RMSE were 1.4 and 7.6% under artificial light conditions (n = 50) and 3.6 and 13.3% under natural field light conditions (n = 45), respectively. The constructed low-cost photosynthesis measurement system, utilizing the K30 CO₂ sensor and a single-board microcomputer, demonstrated high responsiveness and accuracy comparable to commercial standard systems, thereby making it accessible and practical for a broader range of users. Future work will involve selecting an inexpensive humidity sensor and establishing a system for measuring water-use efficiency.

叶片光合速率在植物科学中是一种生长指标;然而,传统测量系统的高成本(超过70,000美元)是广泛用户感兴趣的光合作用测量的主要问题。最近,廉价的环境传感器和单板微型计算机的可用性大大增加。在本研究中,我们通过对四种具有成本效益的传感器进行比较分析,选择了CO2传感器。与其他测试的低成本传感器相比,经济型K30传感器对二氧化碳波动的响应更好,并且与高精度系统(LI-850)记录的值相比,表现出无噪声的稳定性。将K30传感器集成到自制的由单板机控制的腔室中,构建了闭式腔室系统。演示设备的材料成本约为200美元,整体费用较低。将演示装置与标准开放系统(LI-6400)的甘蔗种质的叶片光合作用测量结果进行了比较,揭示了显著的相关性(p
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引用次数: 0
Time-resolved targeted metabolomics shows an abrupt switch from Calvin-Benson-Bassham cycle to tricarboxylic acid cycle when the light is turned off. 时间分辨目标代谢组学显示,当光线关闭时,从卡尔文-本森-巴萨姆循环突然切换到三羧酸循环。
IF 3.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2025-09-29 DOI: 10.1007/s11120-025-01173-2
Yuan Xu, Stephanie C Schmiege, Thomas D Sharkey

In leaves, major CO₂ fluxes alternate between fixation by the Calvin-Benson-Bassham (CBB) cycle during light and release by the tricarboxylic acid (TCA) cycle in darkness. The speed at which leaf metabolism transitions between these pathways likely influences plant tolerance to fluctuating light conditions. To investigate these rapid metabolic shifts, we exposed leaves to ¹³CO₂ for 20 min to establish a quasi-steady state before abruptly turning off the light while maintaining ¹³CO₂ feeding. Within 10 s of dark transition, 3-phosphoglycerate levels rose significantly while most other CBB cycle intermediates decreased by more than 90%. Simultaneously, carbon accumulated in alanine, likely via pyruvate. Over the subsequent 10 min, six- and five-carbon TCA cycle intermediates steadily increased. In contrast, four-carbon TCA intermediates peaked at one minute, declined at three minutes, and rose again at 10 min, a pattern mirrored by most measured amino acids. These results reveal an exceptionally rapid metabolic reconfiguration from CO₂ fixation by the CBB cycle in light to TCA cycle activation for energy production in darkness, accompanied by substantial changes in amino acid metabolism.

在叶片中,主要的CO₂通量在光照下由Calvin-Benson-Bassham (CBB)循环固定和黑暗中由三羧酸(TCA)循环释放之间交替进行。叶片代谢在这些途径之间转换的速度可能影响植物对波动光条件的耐受性。为了研究这些快速的代谢变化,我们将叶片暴露在¹³CO₂中20分钟以建立准稳定状态,然后在保持¹³CO₂摄食的情况下突然关灯。在暗转10 s内,3-磷酸甘油酸水平显著上升,而大多数其他CBB循环中间体水平下降90%以上。同时,碳可能通过丙酮酸在丙氨酸中积累。在随后的10分钟内,六碳和五碳TCA循环中间体稳步增加。相比之下,四碳TCA中间体在1分钟达到峰值,在3分钟下降,在10分钟再次上升,大多数测量的氨基酸都反映了这一模式。这些结果揭示了一个异常快速的代谢重构,从光下CBB循环固定CO 2到暗下TCA循环激活产生能量,伴随着氨基酸代谢的实质性变化。
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引用次数: 0
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Photosynthesis Research
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