Pub Date : 2026-01-16DOI: 10.1088/1361-6560/ae399e
Roel C Kwakernaak, Massimiliano Zanoli, Zoltán Perkó, Maarten M Paulides, Sergio Curto
Objective: Hyperthermia, the elevation of tumor temperature to 39-44◦C, is an effective adjuvant treatment for head and neck (H&N) cancer, enhancing the effects of radiotherapy and chemotherapy. This study investigates the robustness of hyperthermia treatment planning (HTP) for H&N cancer using the HyperCollar3D applicator, focusing on uncertainties in patient positioning, tissue properties, and water bolus cooling efficacy.
Approach: A retrospective analysis was conducted of 16 patients treated at the Erasmus Medical Center, utilizing Polynomial Chaos Expansion to model the impact of uncertainties on temperature distributions and treatment quality metrics.
Main results: Our findings indicate significant variability in target temperatures due to uncertainties in these tissue properties (2.1◦C T90 95% confidence interval), further exacerbated by patient positioning errors (2.3◦C T90 95% confidence interval for 5mm positioning errors). Uncertainty in dielectric tissue properties causes the largest chunk of the variance (47%) in T90 followed by positioning errors (22%).
Significance: This study highlights the critical importance of accurate measurement of tissue properties and precise patient positioning to achieve effective hyperthermia treatment outcomes. Our findings strongly advocate the development of more robust and quantitative treatment planning and delivery approaches, aiming to enhance the precision and clinical efficacy of HTP protocols for H&N cancer treatments.
{"title":"Uncertainty analysis in hyperthermia treatment planning for head & neck cancer using polynomial chaos expansion.","authors":"Roel C Kwakernaak, Massimiliano Zanoli, Zoltán Perkó, Maarten M Paulides, Sergio Curto","doi":"10.1088/1361-6560/ae399e","DOIUrl":"https://doi.org/10.1088/1361-6560/ae399e","url":null,"abstract":"<p><strong>Objective: </strong>Hyperthermia, the elevation of tumor temperature to 39-44◦C, is an effective adjuvant treatment for head and neck (H&N) cancer, enhancing the effects of radiotherapy and chemotherapy. This study investigates the robustness of hyperthermia treatment planning (HTP) for H&N cancer using the HyperCollar3D applicator, focusing on uncertainties in patient positioning, tissue properties, and water bolus cooling efficacy.
Approach: A retrospective analysis was conducted of 16 patients treated at the Erasmus Medical Center, utilizing Polynomial Chaos Expansion to model the impact of uncertainties on temperature distributions and treatment quality metrics.
Main results: Our findings indicate significant variability in target temperatures due to uncertainties in these tissue properties (2.1◦C T90 95% confidence interval), further exacerbated by patient positioning errors (2.3◦C T90 95% confidence interval for 5mm positioning errors). Uncertainty in dielectric tissue properties causes the largest chunk of the variance (47%) in T90 followed by positioning errors (22%).
Significance: This study highlights the critical importance of accurate measurement of tissue properties and precise patient positioning to achieve effective hyperthermia treatment outcomes. Our findings strongly advocate the development of more robust and quantitative treatment planning and delivery approaches, aiming to enhance the precision and clinical efficacy of HTP protocols for H&N cancer treatments.</p>","PeriodicalId":20185,"journal":{"name":"Physics in medicine and biology","volume":" ","pages":""},"PeriodicalIF":3.4,"publicationDate":"2026-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145998806","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-16DOI: 10.1088/1361-6560/ae22b7
Stewart Mein, Takamitsu Masuda, Koki Kasamatsu, Taku Nakaji, Yusuke Nomura, Jiayao Sun, Ken Katagiri, Yoshiyuki Iwata, Nobuyuki Kanematsu, Kota Mizushima, Taku Inaniwa, Sodai Tanaka
Neon ion (20Ne) beam radiotherapy was one of the primary particle therapy candidates investigated during the clinical trials beginning in the 1970s at the Lawrence Berkely National Laboratory (LBNL), which shut down in the early 1990s. Currently, therapeutic neon ion beams are available at only one clinical facility worldwide, the National Institutes for Quantum Science and Technology (QST) in Chiba, Japan. Recently, neon ion beams were commissioned at QST Hospital as part of the first clinical multi-ion therapy (MIT) program, which aims to improve clinical outcomes by escalating higher linear energy transfer (LET) radiation in the tumor for treating therapy-resistant disease. With the advancement of high-precision scanning delivery techniques, neon ion treatments in the present day could be delivered more safely and with greater precision compared to the first and only clinical application decades prior at LBNL using passive scattering technology. Despite their promising results, preclinical investigations of neon ions are scarce outside of Japan and further independent studies are needed. Clinically, neon ion therapy may offer benefits in treating certain malignancies by escalating LET in the tumor, but its limited availability and high costs restrict its current use and adoption. Studies have shown that20Ne or multi-ion mixtures (4He,12C,16O and/or20Ne) can provide larger degrees of freedom in optimization of dose, LET and relative biological effectiveness, otherwise unattainable with other single ion techniques. Neon ion beams are under investigation in the ongoing MIT clinical trials which will establish their broader applicability. In this review, the technology, physics, radiobiology, and potential clinical applications of neon ion beams are outlined. The status of therapeutic neon ion beams is provided while discussing future research and clinical directions, including technological development of novel particle therapy delivery techniques, such as multi-ion, mini-beam, arc, and ultra-high dose rate.
{"title":"Neon ion radiotherapy: physics and biology.","authors":"Stewart Mein, Takamitsu Masuda, Koki Kasamatsu, Taku Nakaji, Yusuke Nomura, Jiayao Sun, Ken Katagiri, Yoshiyuki Iwata, Nobuyuki Kanematsu, Kota Mizushima, Taku Inaniwa, Sodai Tanaka","doi":"10.1088/1361-6560/ae22b7","DOIUrl":"10.1088/1361-6560/ae22b7","url":null,"abstract":"<p><p>Neon ion (<sup>20</sup>Ne) beam radiotherapy was one of the primary particle therapy candidates investigated during the clinical trials beginning in the 1970s at the Lawrence Berkely National Laboratory (LBNL), which shut down in the early 1990s. Currently, therapeutic neon ion beams are available at only one clinical facility worldwide, the National Institutes for Quantum Science and Technology (QST) in Chiba, Japan. Recently, neon ion beams were commissioned at QST Hospital as part of the first clinical multi-ion therapy (MIT) program, which aims to improve clinical outcomes by escalating higher linear energy transfer (LET) radiation in the tumor for treating therapy-resistant disease. With the advancement of high-precision scanning delivery techniques, neon ion treatments in the present day could be delivered more safely and with greater precision compared to the first and only clinical application decades prior at LBNL using passive scattering technology. Despite their promising results, preclinical investigations of neon ions are scarce outside of Japan and further independent studies are needed. Clinically, neon ion therapy may offer benefits in treating certain malignancies by escalating LET in the tumor, but its limited availability and high costs restrict its current use and adoption. Studies have shown that<sup>20</sup>Ne or multi-ion mixtures (<sup>4</sup>He,<sup>12</sup>C,<sup>16</sup>O and/or<sup>20</sup>Ne) can provide larger degrees of freedom in optimization of dose, LET and relative biological effectiveness, otherwise unattainable with other single ion techniques. Neon ion beams are under investigation in the ongoing MIT clinical trials which will establish their broader applicability. In this review, the technology, physics, radiobiology, and potential clinical applications of neon ion beams are outlined. The status of therapeutic neon ion beams is provided while discussing future research and clinical directions, including technological development of novel particle therapy delivery techniques, such as multi-ion, mini-beam, arc, and ultra-high dose rate.</p>","PeriodicalId":20185,"journal":{"name":"Physics in medicine and biology","volume":" ","pages":""},"PeriodicalIF":3.4,"publicationDate":"2026-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145574153","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-16DOI: 10.1088/1361-6560/ae399c
Liheng Tian, Laura Tsu, Paulin Vehling, Emilie Alvarez-Michael, Armin Lühr
Objective
Magnetic resonance imaging (MRI)-only proton therapy combines high soft tissue contrast with high-precision dose distributions. However, conventional dose calculation is impossible on MRI due to missing electron density information. This work investigated the feasibility of two fully deep learning (DL)-based MRI-only proton dose calculation pipelines for the pelvic region and their robustness to MRI intensity distortions.
Approach
Two MRI-only proton dose calculation pipelines were established: A) The two-step pipeline converts MRI to synthetic computed tomography (sCT) and predicts proton dose distributions on sCT; B) the direct pipeline predicts proton dose distributions directly on MRI. MRI-CT pairs from 120 pelvis patients were considered. For modeling, 31727 random pencil beams (PBs) and 13430 PBs from 6 treatment plans (TPs) were calculated using Monte Carlo (MC) simulations. Performance of the pipelines was measured by comparing predicted and MC-simulated doses in terms of gamma pass rate (3mm, 3%, dose threshold of 10%) and average relative error (ARE) for, both, individual PBs and TPs. For further understanding, an experiment was conducted to manually introduce intensity distortions to the input image and observe its influence on the predicted dose.
Main results
Both pipelines showed high gamma pass rates (>99.2%). The two-step pipeline showed ARE of 0.11% and 2.63% for individual PBs and TP (planning target volume), respectively. For the direct prediction pipeline, larger ARE of 0.16% and up to 6.11% were observed for individual PBs and TP, respectively. The model predicting dose using MRI directly was robust against added MRI intensity distortions.
Significance
DL-based MRI-only proton dose calculation was feasible in the pelvic region. The direct pipeline showed potential to learn the mapping between MRI image pattern and proton dose distribution, though, improvement in terms of information usage is warranted. The two-step pipeline is capable to predict proton dose distributions with low errors.
.
{"title":"Magnetic resonance imaging-based proton dose calculation for pelvic tumors using deep learning.","authors":"Liheng Tian, Laura Tsu, Paulin Vehling, Emilie Alvarez-Michael, Armin Lühr","doi":"10.1088/1361-6560/ae399c","DOIUrl":"https://doi.org/10.1088/1361-6560/ae399c","url":null,"abstract":"<p><p>Objective
Magnetic resonance imaging (MRI)-only proton therapy combines high soft tissue contrast with high-precision dose distributions. However, conventional dose calculation is impossible on MRI due to missing electron density information. This work investigated the feasibility of two fully deep learning (DL)-based MRI-only proton dose calculation pipelines for the pelvic region and their robustness to MRI intensity distortions. 
Approach
Two MRI-only proton dose calculation pipelines were established: A) The two-step pipeline converts MRI to synthetic computed tomography (sCT) and predicts proton dose distributions on sCT; B) the direct pipeline predicts proton dose distributions directly on MRI. MRI-CT pairs from 120 pelvis patients were considered. For modeling, 31727 random pencil beams (PBs) and 13430 PBs from 6 treatment plans (TPs) were calculated using Monte Carlo (MC) simulations. Performance of the pipelines was measured by comparing predicted and MC-simulated doses in terms of gamma pass rate (3mm, 3%, dose threshold of 10%) and average relative error (ARE) for, both, individual PBs and TPs. For further understanding, an experiment was conducted to manually introduce intensity distortions to the input image and observe its influence on the predicted dose.
Main results
Both pipelines showed high gamma pass rates (>99.2%). The two-step pipeline showed ARE of 0.11% and 2.63% for individual PBs and TP (planning target volume), respectively. For the direct prediction pipeline, larger ARE of 0.16% and up to 6.11% were observed for individual PBs and TP, respectively. The model predicting dose using MRI directly was robust against added MRI intensity distortions. 
Significance
DL-based MRI-only proton dose calculation was feasible in the pelvic region. The direct pipeline showed potential to learn the mapping between MRI image pattern and proton dose distribution, though, improvement in terms of information usage is warranted. The two-step pipeline is capable to predict proton dose distributions with low errors.
.</p>","PeriodicalId":20185,"journal":{"name":"Physics in medicine and biology","volume":" ","pages":""},"PeriodicalIF":3.4,"publicationDate":"2026-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145990320","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Objective: The LET trilemma-an inherent conflict between target dose homogeneity, range robustness, and high dose-averaged linear energy transfer (LETd)-poses a major challenge in treatment optimization. To ensure accurate beam delivery in multi-ion therapy, this study evaluated the effects of range and setup uncertainties on LETd-optimized treatment plans and explored strategies to overcome this trilemma, framed within the phase I LETdescalation trial for head and neck cancers.
Approach: Six head and neck cancer patients representing diverse tumors were selected. Multi-ion therapy plans using carbon-, oxygen-, and neon-ion beams were optimized to achieve a target LETdof 90 keV/μm (the final LETdlevel of the phase I trial). These plans were recalculated to incorporate uncertainties arising from stopping power ratio conversion and random daily setup variations across the 16 fractions, and their combined effects on the dose and LETddistributions were evaluated. Additionally, to explore strategies to increase plan robustness, five modified plans were evaluated for one patient identified as particularly susceptible to these uncertainties.
Main results: Range uncertainty was the dominant contributor to degraded plan quality in multi-ion therapy, substantially outweighing setup uncertainty. A small, centrally located tumor was most susceptible, exhibiting dose inhomogeneity of approximately 11%, while LETdvariations were approximately 3 keV/μm. The most effective strategy involved replacing the original carbon-oxygen combination with oxygen ions for two beam ports, reducing dose inhomogeneity by more than 7% while maintaining normal tissue sparing adjacent to the target.
Significance: Optimization toward achieving higher LETdmakes treatment plans susceptible to range uncertainty, leading to dose degradation within small, deep-seated tumors. Employing heavier ions is an effective strategy to overcome this challenge, enabling robust target coverage by leveraging their inherently higher LETdwhile sparing normal tissues. These findings provide a key rationale for ion selection in the design of robust multi-ion therapy.
{"title":"Robustness of LET<sub>d</sub>-optimized multi-ion therapy against range and setup uncertainties: evaluation and enhancement with carbon-, oxygen-, and neon-ion beams.","authors":"Takamitsu Masuda, Hiroaki Ikawa, Makoto Shinoto, Masashi Koto, Koki Kasamatsu, Yusuke Nomura, Nobuyuki Kanematsu, Taku Inaniwa","doi":"10.1088/1361-6560/ae387b","DOIUrl":"https://doi.org/10.1088/1361-6560/ae387b","url":null,"abstract":"<p><strong>Objective: </strong>The LET trilemma-an inherent conflict between target dose homogeneity, range robustness, and high dose-averaged linear energy transfer (LET<sub>d</sub>)-poses a major challenge in treatment optimization. To ensure accurate beam delivery in multi-ion therapy, this study evaluated the effects of range and setup uncertainties on LET<sub>d</sub>-optimized treatment plans and explored strategies to overcome this trilemma, framed within the phase I LET<sub>d</sub>escalation trial for head and neck cancers.
Approach: Six head and neck cancer patients representing diverse tumors were selected. Multi-ion therapy plans using carbon-, oxygen-, and neon-ion beams were optimized to achieve a target LET<sub>d</sub>of 90 keV/μm (the final LET<sub>d</sub>level of the phase I trial). These plans were recalculated to incorporate uncertainties arising from stopping power ratio conversion and random daily setup variations across the 16 fractions, and their combined effects on the dose and LET<sub>d</sub>distributions were evaluated. Additionally, to explore strategies to increase plan robustness, five modified plans were evaluated for one patient identified as particularly susceptible to these uncertainties.
Main results: Range uncertainty was the dominant contributor to degraded plan quality in multi-ion therapy, substantially outweighing setup uncertainty. A small, centrally located tumor was most susceptible, exhibiting dose inhomogeneity of approximately 11%, while LET<sub>d</sub>variations were approximately 3 keV/μm. The most effective strategy involved replacing the original carbon-oxygen combination with oxygen ions for two beam ports, reducing dose inhomogeneity by more than 7% while maintaining normal tissue sparing adjacent to the target.
Significance: Optimization toward achieving higher LET<sub>d</sub>makes treatment plans susceptible to range uncertainty, leading to dose degradation within small, deep-seated tumors. Employing heavier ions is an effective strategy to overcome this challenge, enabling robust target coverage by leveraging their inherently higher LET<sub>d</sub>while sparing normal tissues. These findings provide a key rationale for ion selection in the design of robust multi-ion therapy.</p>","PeriodicalId":20185,"journal":{"name":"Physics in medicine and biology","volume":" ","pages":""},"PeriodicalIF":3.4,"publicationDate":"2026-01-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145985483","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-14DOI: 10.1088/1361-6560/ae2e79
Alou Diakite, Cheng Li, Lei Xie, Ruoyou Wu, Yuanjing Feng, Jianzhong He, Shanshan Wang
Objective.Accurately delineating the visual pathway (VP) is crucial for understanding the human visual system and diagnosing related disorders. Exploring multi-parametric MR imaging data has been identified as an important way to delineate VP. However, due to the complex cross-sequence relationships, existing methods cannot effectively model the complementary information from different MRI sequences. In addition, these existing methods heavily rely on large training data with labels, which is labor-intensive and time-consuming to obtain.Approach.We propose a novel semi-supervised multi-parametric feature decomposition framework for VP delineation. Specifically, a correlation-constrained feature decomposition is designed to handle the complex cross-sequence relationships by capturing the unique characteristics of each MRI sequence and easing the multi-parametric information fusion process. Furthermore, a consistency-based sample enhancement module is developed to address the limited labeled data issue, by generating and promoting meaningful edge information from unlabeled data.Main results.We validate our framework using two public datasets and one in-house multi-shell diffusion MRI dataset. Experimental results demonstrate the superiority of our approach in terms of delineation performance when compared to six state-of-the-art approaches.Significance.Our proposed framework effectively mitigates the challenges of modeling complex cross-sequence relationships and limited labeled data, offering a robust solution for accurate VP delineation. This approach not only enhances the understanding of the human visual system but also holds potential for improving the diagnosis of VP-related disorders.
{"title":"Cross-sequence semi-supervised learning for multi-parametric MRI-based visual pathway delineation.","authors":"Alou Diakite, Cheng Li, Lei Xie, Ruoyou Wu, Yuanjing Feng, Jianzhong He, Shanshan Wang","doi":"10.1088/1361-6560/ae2e79","DOIUrl":"10.1088/1361-6560/ae2e79","url":null,"abstract":"<p><p><i>Objective.</i>Accurately delineating the visual pathway (VP) is crucial for understanding the human visual system and diagnosing related disorders. Exploring multi-parametric MR imaging data has been identified as an important way to delineate VP. However, due to the complex cross-sequence relationships, existing methods cannot effectively model the complementary information from different MRI sequences. In addition, these existing methods heavily rely on large training data with labels, which is labor-intensive and time-consuming to obtain.<i>Approach.</i>We propose a novel semi-supervised multi-parametric feature decomposition framework for VP delineation. Specifically, a correlation-constrained feature decomposition is designed to handle the complex cross-sequence relationships by capturing the unique characteristics of each MRI sequence and easing the multi-parametric information fusion process. Furthermore, a consistency-based sample enhancement module is developed to address the limited labeled data issue, by generating and promoting meaningful edge information from unlabeled data.<i>Main results.</i>We validate our framework using two public datasets and one in-house multi-shell diffusion MRI dataset. Experimental results demonstrate the superiority of our approach in terms of delineation performance when compared to six state-of-the-art approaches.<i>Significance.</i>Our proposed framework effectively mitigates the challenges of modeling complex cross-sequence relationships and limited labeled data, offering a robust solution for accurate VP delineation. This approach not only enhances the understanding of the human visual system but also holds potential for improving the diagnosis of VP-related disorders.</p>","PeriodicalId":20185,"journal":{"name":"Physics in medicine and biology","volume":" ","pages":""},"PeriodicalIF":3.4,"publicationDate":"2026-01-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145775333","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-14DOI: 10.1088/1361-6560/ae237c
Nils Krah, Nicolas Arbor, Thomas Baudier, Julien Bert, Konstantinos Chatzipapas, Martina Favaretto, Hermann Fuchs, Loïc Grevillot, Hussein Harb, Gert Van Hoey, Maxime Jacquet, Sébastien Jan, Yihan Jia, George C Kagadis, Han Gyu Kang, Paul Klever, Olga Kochebina, Wojciech Krzemien, Lydia Maigne, Philipp Mohr, Guneet Mummaneni, Valentina Paneta, Panagiotis Papadimitroulas, Alexis Pereda, Axel Rannou, Andreas F Resch, Emilie Roncali, Maxime Toussaint, Carlotta Trigila, Charalampos Tsoumpas, Jing Zhang, Karl Ziemons, David Sarrut
Over the past years, we have developed GATE version 10, a major re-implementation of the long-standing Geant4-based Monte Carlo application for particle and radiation transport simulation in medical physics. This release introduces many new features and significant improvements, most notably a Python-based user interface replacing the legacy static input files. The new functionality of GATE version 10 is described in the part 1 companion paper (Sarrutet al2025 arXiv:2507.09842). The development brought significant challenges. In this paper, we present the solutions that we have developed to overcome these challenges. In particular, we present a modular design that robustly manages the core components of a simulation: particle sources, geometry, physics processes, and data acquisition. The architecture consists of integrated C++ and Python codes. This framework allows for the precise, time-aware generation of primary particles, a critical requirement for accurately modeling positron emission tomography, radionuclide therapies, or prompt-gamma timing systems. We present how GATE 10 handles complex Geant4 physics settings while exposing a simple interface to the user. Furthermore, we describe the methodological solutions that facilitate the seamless integration of advanced physics models and variance reduction techniques. The architecture supports sophisticated scoring of physical quantities (such as Linear Energy Transfer and Relative Biological Effectiveness) and is designed for multithreaded execution. The new user interface allows researchers to script complex simulation workflows and directly couple external tools, such as artificial intelligence models for source generation or detector response. By detailing these architectural innovations, we demonstrate how GATE 10 provides a more powerful and flexible tool for research and innovation in medical physics. This paper is not intended to be a developer guide. Its purpose is to share with the research community in-depth explanations of our development effort that made the new GATE 10 possible.
在过去的几年里,我们开发了GATE版本10,这是对医学物理学中粒子和辐射输运模拟的长期基于geant4的蒙特卡罗应用程序的主要重新实现。此版本引入了许多新特性和重大改进,最值得注意的是基于python的用户界面取代了传统的静态输入文件。GATE版本10的新功能在第1部分的配套论文(Sarrut et al., 2025)中进行了描述。这一发展带来了重大挑战。在本文中,我们提出了我们为克服这些挑战而开发的解决方案。特别是,我们提出了一个模块化的设计,稳健地管理模拟的核心组件:粒子源,几何,物理过程和数据采集。该体系结构由用c++和Python编写的部分组成,这些部分需要耦合。我们解释了这个框架如何允许精确的、有时间意识的初级粒子的产生,这是准确建模正电子发射断层扫描(PET)、放射性核素治疗或提示伽马定时系统的关键要求。我们展示GATE 10如何处理复杂的Geant4物理设置,同时向用户展示一个简单的界面。此外,我们还描述了促进先进物理模型和方差减少技术无缝集成的方法解决方案。该体系结构支持复杂的物理量评分(如线性能量转移和相对生物有效性),并为多线程执行而设计。新的用户界面允许研究人员编写复杂的仿真工作流程,并直接耦合外部工具,例如用于源生成或检测器响应的人工智能模型。通过详细介绍这些架构创新,我们展示GATE 10如何为医学物理学的研究和创新提供更强大、更灵活的工具。本文不打算作为开发人员指南。它的目的是与研究社区分享我们的开发工作的深入解释,使新的GATE 10成为可能。
{"title":"GATE 10 Monte Carlo particle transport simulation: II. Architecture and innovations.","authors":"Nils Krah, Nicolas Arbor, Thomas Baudier, Julien Bert, Konstantinos Chatzipapas, Martina Favaretto, Hermann Fuchs, Loïc Grevillot, Hussein Harb, Gert Van Hoey, Maxime Jacquet, Sébastien Jan, Yihan Jia, George C Kagadis, Han Gyu Kang, Paul Klever, Olga Kochebina, Wojciech Krzemien, Lydia Maigne, Philipp Mohr, Guneet Mummaneni, Valentina Paneta, Panagiotis Papadimitroulas, Alexis Pereda, Axel Rannou, Andreas F Resch, Emilie Roncali, Maxime Toussaint, Carlotta Trigila, Charalampos Tsoumpas, Jing Zhang, Karl Ziemons, David Sarrut","doi":"10.1088/1361-6560/ae237c","DOIUrl":"10.1088/1361-6560/ae237c","url":null,"abstract":"<p><p>Over the past years, we have developed GATE version 10, a major re-implementation of the long-standing Geant4-based Monte Carlo application for particle and radiation transport simulation in medical physics. This release introduces many new features and significant improvements, most notably a Python-based user interface replacing the legacy static input files. The new functionality of GATE version 10 is described in the part 1 companion paper (Sarrut<i>et al</i>2025 arXiv:2507.09842). The development brought significant challenges. In this paper, we present the solutions that we have developed to overcome these challenges. In particular, we present a modular design that robustly manages the core components of a simulation: particle sources, geometry, physics processes, and data acquisition. The architecture consists of integrated C++ and Python codes. This framework allows for the precise, time-aware generation of primary particles, a critical requirement for accurately modeling positron emission tomography, radionuclide therapies, or prompt-gamma timing systems. We present how GATE 10 handles complex Geant4 physics settings while exposing a simple interface to the user. Furthermore, we describe the methodological solutions that facilitate the seamless integration of advanced physics models and variance reduction techniques. The architecture supports sophisticated scoring of physical quantities (such as Linear Energy Transfer and Relative Biological Effectiveness) and is designed for multithreaded execution. The new user interface allows researchers to script complex simulation workflows and directly couple external tools, such as artificial intelligence models for source generation or detector response. By detailing these architectural innovations, we demonstrate how GATE 10 provides a more powerful and flexible tool for research and innovation in medical physics. This paper is not intended to be a developer guide. Its purpose is to share with the research community in-depth explanations of our development effort that made the new GATE 10 possible.</p>","PeriodicalId":20185,"journal":{"name":"Physics in medicine and biology","volume":" ","pages":""},"PeriodicalIF":3.4,"publicationDate":"2026-01-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145597120","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-14DOI: 10.1088/1361-6560/ae2c38
Mara Bruzzi, Monica Scaringella, Roberto Righetto, Elena Fogazzi, Francesco Fracchiolla, Francesco Tommasino, Enrico Verroi, Stefano Lorentini, Carlo Civinini
Objective.Treatment planning in proton therapy requires an accurate estimation of stopping power ratio relative to water (SPR) maps. Presently, about 4% of patients submitted to radiotherapy treatments have metallic implants, which are responsible for an incorrect determination of SPRs in prostheses and surrounding regions. This study presents the first application of the proton computed tomography (pCT) technique, able to directly measure SPRs maps, on complex metallic implants.Approach.A homogeneous Ti6Al4V alloy sample, a set of metallic devices used for prostheses and an intra-vertebral titanium alloy implant have been inspected, by means of a prototype pCT system with a 5 × 20 cm2field-of-view (FoV) developed by INFN Firenze (Italy), under a proton beam at Trento Proton Therapy Centre (APSS, Trento, Italy). For comparison, a Multi Layer Ionization Chamber (MLIC) has been used to independently determine the SPR mean value of the Ti6Al4V alloy sample.Main Results.Tomographic reconstructions of all devices and materials have been performed and SPR maps have been obtained. All pCT images and profiles, even of metallic components, are characterized by negligible artifacts. The fine spatial resolution of our pCT system, about 0.7 lp mm-1, allowed us to resolve details within a millimeter scale. The internal grid of the meshed cage as well as details of the screws' head of the intra-vertebral titanium alloy implant are clearly visible. The SPR of the Ti6Al4V alloy sample measured with pCT, 3.14 ± 0.02, compares well with what was measured by MLIC: 3.17 ± 0.02.Significance.This study presents the first application of the pCT methodology to directly measure SPR maps of complex metal prostheses. The ability of pCT to correctly determine mean SPR values has been experimentally demonstrated. Furthermore, this technique was shown to reconstruct complex metal structures at the millimeter scale with negligible artifacts.
{"title":"Direct measurement of relative stopping power maps of prosthesis devices and synthetic materials by proton computed tomography.","authors":"Mara Bruzzi, Monica Scaringella, Roberto Righetto, Elena Fogazzi, Francesco Fracchiolla, Francesco Tommasino, Enrico Verroi, Stefano Lorentini, Carlo Civinini","doi":"10.1088/1361-6560/ae2c38","DOIUrl":"10.1088/1361-6560/ae2c38","url":null,"abstract":"<p><p><i>Objective.</i>Treatment planning in proton therapy requires an accurate estimation of stopping power ratio relative to water (SPR) maps. Presently, about 4% of patients submitted to radiotherapy treatments have metallic implants, which are responsible for an incorrect determination of SPRs in prostheses and surrounding regions. This study presents the first application of the proton computed tomography (pCT) technique, able to directly measure SPRs maps, on complex metallic implants.<i>Approach.</i>A homogeneous Ti6Al4V alloy sample, a set of metallic devices used for prostheses and an intra-vertebral titanium alloy implant have been inspected, by means of a prototype pCT system with a 5 × 20 cm<sup>2</sup>field-of-view (FoV) developed by INFN Firenze (Italy), under a proton beam at Trento Proton Therapy Centre (APSS, Trento, Italy). For comparison, a Multi Layer Ionization Chamber (MLIC) has been used to independently determine the SPR mean value of the Ti6Al4V alloy sample.<i>Main Results.</i>Tomographic reconstructions of all devices and materials have been performed and SPR maps have been obtained. All pCT images and profiles, even of metallic components, are characterized by negligible artifacts. The fine spatial resolution of our pCT system, about 0.7 lp mm<sup>-1</sup>, allowed us to resolve details within a millimeter scale. The internal grid of the meshed cage as well as details of the screws' head of the intra-vertebral titanium alloy implant are clearly visible. The SPR of the Ti6Al4V alloy sample measured with pCT, 3.14 ± 0.02, compares well with what was measured by MLIC: 3.17 ± 0.02.<i>Significance.</i>This study presents the first application of the pCT methodology to directly measure SPR maps of complex metal prostheses. The ability of pCT to correctly determine mean SPR values has been experimentally demonstrated. Furthermore, this technique was shown to reconstruct complex metal structures at the millimeter scale with negligible artifacts.</p>","PeriodicalId":20185,"journal":{"name":"Physics in medicine and biology","volume":" ","pages":""},"PeriodicalIF":3.4,"publicationDate":"2026-01-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145743763","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-14DOI: 10.1088/1361-6560/ae387a
Audran Poher, Gérémy Michaud, Louis Archambault, Luc Beaulieu
Objective: With every treatment vault being different, the impact of geometrical parameters such as
the signal source-to-camera distance on dose proportionality must be evaluated. The aim of this study is to
characterize the Cherenkov signal and polarization state as a function of the source-to-camera distance. Our
hypothesis is that with increasing distance, the need for angular correction distributions decreases, resulting
in acquisition of a polarized Cherenkov signal directly proportional to dose.
Approach: A water tank
and a polyvinyltoluene-based plastic scintillator volume were irradiated by a 6 MV beam to respectively
produce Cherenkov emissions as well as a control signal. Monte Carlo reference simulations were performed
using TOPAS. Acquisitions of the Cherenkov signal were achieved using a cooled CCD camera and a timegated
intensified CMOS camera. By fitting a modified Malus Law to the Cherenkov acquisitions, the total
Cherenkov signal intensity and its purely polarized component was extracted. Signal source-to-camera
distance of 0.5, 1, 2, 3 and 4 m were tested to evaluate this distance's impact on the signal distributions.
Projected percent depth dose (PPDD) and projected transverse profiles calculated from the different signal
sources were then compared.
Main results: All PPDDs at camera distances of 3 and 4 m agree with Monte
Carlo (≤5%) over depths ranging from 1.5 to 16 cm. Cherenkov PPDDs at camera distances of 0.5 and 1 m
show significant discrepancies (≥5%) compared to MC because no angular corrections are applied. Over
the plateau region of projected transverse profiles, general agreement with MC is achieved. Thirteen of the
17 luminescence-based beam widths show ≤5% differences with MC.
Significance: This study confirms
the above-mentioned hypothesis up until the image quality diminishes. For this work's setup, the optimal
camera distance for dosimetry using Cherenkov polarized imaging was found to be between 3 and 4 m.
.
{"title":"Polarized Cherenkov light imaging dosimetry: the impact of source to detector distance.","authors":"Audran Poher, Gérémy Michaud, Louis Archambault, Luc Beaulieu","doi":"10.1088/1361-6560/ae387a","DOIUrl":"https://doi.org/10.1088/1361-6560/ae387a","url":null,"abstract":"<p><strong>Objective: </strong>With every treatment vault being different, the impact of geometrical parameters such as
the signal source-to-camera distance on dose proportionality must be evaluated. The aim of this study is to
characterize the Cherenkov signal and polarization state as a function of the source-to-camera distance. Our
hypothesis is that with increasing distance, the need for angular correction distributions decreases, resulting
in acquisition of a polarized Cherenkov signal directly proportional to dose.</p><p><strong>Approach: </strong>A water tank
and a polyvinyltoluene-based plastic scintillator volume were irradiated by a 6 MV beam to respectively
produce Cherenkov emissions as well as a control signal. Monte Carlo reference simulations were performed
using TOPAS. Acquisitions of the Cherenkov signal were achieved using a cooled CCD camera and a timegated
intensified CMOS camera. By fitting a modified Malus Law to the Cherenkov acquisitions, the total
Cherenkov signal intensity and its purely polarized component was extracted. Signal source-to-camera
distance of 0.5, 1, 2, 3 and 4 m were tested to evaluate this distance's impact on the signal distributions.
Projected percent depth dose (PPDD) and projected transverse profiles calculated from the different signal
sources were then compared.</p><p><strong>Main results: </strong>All PPDDs at camera distances of 3 and 4 m agree with Monte
Carlo (≤5%) over depths ranging from 1.5 to 16 cm. Cherenkov PPDDs at camera distances of 0.5 and 1 m
show significant discrepancies (≥5%) compared to MC because no angular corrections are applied. Over
the plateau region of projected transverse profiles, general agreement with MC is achieved. Thirteen of the
17 luminescence-based beam widths show ≤5% differences with MC.</p><p><strong>Significance: </strong>This study confirms
the above-mentioned hypothesis up until the image quality diminishes. For this work's setup, the optimal
camera distance for dosimetry using Cherenkov polarized imaging was found to be between 3 and 4 m.
.</p>","PeriodicalId":20185,"journal":{"name":"Physics in medicine and biology","volume":" ","pages":""},"PeriodicalIF":3.4,"publicationDate":"2026-01-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145985506","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-14DOI: 10.1088/1361-6560/ae237b
David Sarrut, Nicolas Arbor, Thomas Baudier, Julien Bert, Konstantinos Chatzipapas, Martina Favaretto, Hermann Fuchs, Loïc Grevillot, Hussein Harb, Gert Van Hoey, Maxime Jacquet, Sébastien Jan, Yihan Jia, George C Kagadis, Han Gyu Kang, Paul Klever, Olga Kochebina, Wojciech Krzemien, Lydia Maigne, Philipp Mohr, Guneet Mummaneni, Valentina Paneta, Panagiotis Papadimitroulas, Alexis Pereda, Axel Rannou, Andreas F Resch, Emilie Roncali, Maxime Toussaint, Carlotta Trigila, Charalampos Tsoumpas, Jing Zhang, Karl Ziemons, Nils Krah
We present GATE version 10, a major evolution of the open-source Monte Carlo simulation application for medical physics, built on Geant4. This release marks a transformative evolution, featuring a modern Python-based user interface, enhanced multithreading and multiprocessing capabilities, the ability to be embedded as a library within other software, and a streamlined framework for collaborative development. In this Part 1 paper, we outline GATE's position among other Monte Carlo codes, the core principles driving this evolution, and the robust development cycle employed. We also detail the new features and improvements. Part 2 will focus on the architectural innovations and technical challenges. By combining an open, collaborative framework with cutting-edge features, such a Monte Carlo platform supports a wide range of academic and industrial research, solidifying its role as a critical tool for innovation in medical physics.
{"title":"GATE 10 Monte Carlo particle transport simulation: I. Development and new features.","authors":"David Sarrut, Nicolas Arbor, Thomas Baudier, Julien Bert, Konstantinos Chatzipapas, Martina Favaretto, Hermann Fuchs, Loïc Grevillot, Hussein Harb, Gert Van Hoey, Maxime Jacquet, Sébastien Jan, Yihan Jia, George C Kagadis, Han Gyu Kang, Paul Klever, Olga Kochebina, Wojciech Krzemien, Lydia Maigne, Philipp Mohr, Guneet Mummaneni, Valentina Paneta, Panagiotis Papadimitroulas, Alexis Pereda, Axel Rannou, Andreas F Resch, Emilie Roncali, Maxime Toussaint, Carlotta Trigila, Charalampos Tsoumpas, Jing Zhang, Karl Ziemons, Nils Krah","doi":"10.1088/1361-6560/ae237b","DOIUrl":"10.1088/1361-6560/ae237b","url":null,"abstract":"<p><p>We present GATE version 10, a major evolution of the open-source Monte Carlo simulation application for medical physics, built on Geant4. This release marks a transformative evolution, featuring a modern Python-based user interface, enhanced multithreading and multiprocessing capabilities, the ability to be embedded as a library within other software, and a streamlined framework for collaborative development. In this Part 1 paper, we outline GATE's position among other Monte Carlo codes, the core principles driving this evolution, and the robust development cycle employed. We also detail the new features and improvements. Part 2 will focus on the architectural innovations and technical challenges. By combining an open, collaborative framework with cutting-edge features, such a Monte Carlo platform supports a wide range of academic and industrial research, solidifying its role as a critical tool for innovation in medical physics.</p>","PeriodicalId":20185,"journal":{"name":"Physics in medicine and biology","volume":" ","pages":""},"PeriodicalIF":3.4,"publicationDate":"2026-01-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145597079","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Objective: This study aims to investigate the impact of the beam temporal profile on the radical dynamics and inter-track interactions of FLASH radiotherapy, supporting parameter optimization for the equipment development, radio-biological experiments and clinical implementation.
Approach: Monte-Carlo simulations based on the independent reaction time (IRT) method were performed to analyze the dynamics after irradiation, including single-pulse or multi-pulses irradiation, pulse repetition rate, pulse width and dose. The physicochemical experiments were performed to measure the hydrated electron lifetimes for validation. The generation and recombination of hydroxyl radicals and hydrated electrons were recorded under 6 MeV electron irradiation with varying beam temporal profiles. The radial distributions of the radicals were statistically analyzed, and the inter-track interactions were assessed through a mathematical model.
Main results: The spatial distribution and temporal evolution of radicals were significantly affected by the beam temporal profiles. Compared with multi-pulses irradiation, single-pulse irradiation mode with a pulse width less than 1/10 of the radical lifetime, a repetition interval longer than the radical lifetime, and a dose exceeding 1 Gy/pulse can lead to rapid consumption of radicals within the first 30% of their lifetime, hence reduced the residual radical content. Instantaneous high dose rates induced overlapping of radical tracks. When the single-pulse dose exceeded 1 Gy, the overlap probability approached 100%, aligning with the dose threshold for the instantaneous radical combination.
Significance: Under a low-duty cycle and high instantaneous dose-rate temporal profile, the radicals were rapidly consumed through track overlap, affecting FLASH effect. The optimized temporal profile can be used to guide the development of equipment and parameter settings in clinical practice to maximize the FLASH effect, such as the laser accelerators and superconducting photocathode guns.
{"title":"Dependence of the radical dynamics on the beam temporal profile in FLASH radiotherapy.","authors":"Jianhan Sun, Xianghui Kong, Jianfeng Lv, Xiaodong Liu, Jinghui Wang, Chen Lin, Tian Li, Yibao Zhang, Senlin Huang","doi":"10.1088/1361-6560/ae37c3","DOIUrl":"https://doi.org/10.1088/1361-6560/ae37c3","url":null,"abstract":"<p><strong>Objective: </strong>This study aims to investigate the impact of the beam temporal profile on the radical dynamics and inter-track interactions of FLASH radiotherapy, supporting parameter optimization for the equipment development, radio-biological experiments and clinical implementation.
Approach: Monte-Carlo simulations based on the independent reaction time (IRT) method were performed to analyze the dynamics after irradiation, including single-pulse or multi-pulses irradiation, pulse repetition rate, pulse width and dose. The physicochemical experiments were performed to measure the hydrated electron lifetimes for validation. The generation and recombination of hydroxyl radicals and hydrated electrons were recorded under 6 MeV electron irradiation with varying beam temporal profiles. The radial distributions of the radicals were statistically analyzed, and the inter-track interactions were assessed through a mathematical model.
Main results: The spatial distribution and temporal evolution of radicals were significantly affected by the beam temporal profiles. Compared with multi-pulses irradiation, single-pulse irradiation mode with a pulse width less than 1/10 of the radical lifetime, a repetition interval longer than the radical lifetime, and a dose exceeding 1 Gy/pulse can lead to rapid consumption of radicals within the first 30% of their lifetime, hence reduced the residual radical content. Instantaneous high dose rates induced overlapping of radical tracks. When the single-pulse dose exceeded 1 Gy, the overlap probability approached 100%, aligning with the dose threshold for the instantaneous radical combination.
Significance: Under a low-duty cycle and high instantaneous dose-rate temporal profile, the radicals were rapidly consumed through track overlap, affecting FLASH effect. The optimized temporal profile can be used to guide the development of equipment and parameter settings in clinical practice to maximize the FLASH effect, such as the laser accelerators and superconducting photocathode guns.</p>","PeriodicalId":20185,"journal":{"name":"Physics in medicine and biology","volume":" ","pages":""},"PeriodicalIF":3.4,"publicationDate":"2026-01-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145966817","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}