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A chromosome-level Mitragyna parvifolia genome unveils spirooxindole alkaloid diversification and mitraphylline biosynthesis. 染色体水平上的细叶密天螺基因组揭示了螺霉吲哚生物碱的多样化和密天螺碱的生物合成。
IF 11.6 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-09 DOI: 10.1093/plcell/koaf207
Larissa C Laforest, Tuan-Anh M Nguyen, Gabriel Oliveira Matsumoto, Pavithra Ramachandria, Andre Chanderbali, Siva Rama Raju Kanumuri, Abhisheak Sharma, Christopher R McCurdy, Thu-Thuy T Dang, Satya Swathi Nadakuduti

Monoterpene indole alkaloids (MIAs) found in the Rubiaceae have varied pharmaceutical uses. Spirooxindole alkaloids are a structural subtype of MIAs with a unique spiro[pyrrolidine-3,3'-oxindole] ring system. Despite their intriguing structures and potent bioactivities, the evolution and diversification of spirooxindole alkaloids remain poorly understood. We report a high-quality chromosome-scale genome assembly of Mitragyna parvifolia, a tree species of the Rubiaceae family that predominantly produces the spirooxindole alkaloid mitraphylline. Comparative genomics, including comprehensive synteny and phylogeny analyses across the MIA-producing order Gentianales revealed a whole-genome duplication event underlying the divergence of the Cinchonoideae alliance from the Coffeeae alliance, leading to diversification of MIA biosynthesis. Transcriptome analyses of young and mature leaves, stems, stipules, and roots integrated with MIA profiling and genome analyses revealed several candidates in the MIA biosynthetic pathway. Functional characterization of selected candidates led to the elucidation of the biosynthesis of the antiproliferative spirooxindole mitraphylline in M. parvifolia. These genomic and transcriptomic resources are invaluable to identify the evolutionary origins and diversification of MIAs and spirooxindole alkaloids.

在茜草科发现的单萜吲哚生物碱(MIAs)具有多种药用价值。螺环吲哚生物碱是一类具有独特螺[吡咯烷-3,3'-氧吲哚]环体系的MIAs。尽管它们具有有趣的结构和强大的生物活性,但螺菌吲哚生物碱的进化和多样化仍然知之甚少。我们报道了一种高质量的染色体规模的基因组组装的米特拉金(Mitragyna parvifolia),米特拉金是红宝石科的一种树种,主要生产螺旋体吲哚生物碱米特拉金。比较基因组学,包括综合合成和系统发育分析在整个MIA生产目的龙胆亚目揭示了全基因组重复事件背后的金鸡亚科联盟从咖啡联盟分化,导致MIA生物合成的多样化。结合MIA分析和基因组分析,对幼叶和成熟叶、茎、托叶和根的转录组分析揭示了MIA生物合成途径的几个候选途径。通过对所选候选物的功能表征,阐明了parvifolia中抗增殖螺旋体吲哚-米特拉菲林的生物合成。这些基因组和转录组学资源对于鉴定MIAs和螺菌吲哚生物碱的进化起源和多样性是无价的。
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引用次数: 0
Seasons change and so do trees: Expression profiling of aspen reveals season-specific gene hubs. 季节变化,树木也一样:杨树的表达谱揭示了季节特异性基因中心。
IF 11.6 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-26 DOI: 10.1093/plcell/koaf213
Renuka Kolli
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引用次数: 0
Expression of Concern: HAB1-SWI3B Interaction Reveals a Link between Abscisic Acid Signaling and Putative SWI/SNF Chromatin-Remodeling Complexes in Arabidopsis. 表达关注:HAB1-SWI3B相互作用揭示了脱落酸信号传导与拟南芥SWI/SNF染色质重塑复合物之间的联系。
IF 11.6 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-04 DOI: 10.1093/plcell/koaf193
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引用次数: 0
Correction to: The heat shock factor 20-HSF4-cellulose synthase A2 module regulates heat stress tolerance in maize. 修正:热休克因子20- hsf4 -纤维素合成酶A2模块调节玉米的耐热性。
IF 11.6 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-04 DOI: 10.1093/plcell/koaf173
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引用次数: 0
Response to "The action of Arabidopsis DICER-LIKE2 in plant growth inhibition". 对“拟南芥DICER-LIKE2在植物生长抑制中的作用”的回应。
IF 11.6 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-04 DOI: 10.1093/plcell/koaf163
Carsten Poul Skou Nielsen, Laura Arribas-Hernández, Peter Brodersen
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引用次数: 0
The action of Arabidopsis DICER-LIKE 2 in plant growth inhibition. 拟南芥DICER-LIKE 2在植物生长抑制中的作用。
IF 11.6 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-04 DOI: 10.1093/plcell/koaf206
Yuelin Liu, Wei Yan, Qianyan Linghu, Huijuan Tan, Hongwei Guo
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引用次数: 0
Expression of Concern: Ubiquitin Ligases RGLG1 and RGLG5 Regulate Abscisic Acid Signaling by Controlling the Turnover of Phosphatase PP2CA. 表达关注:泛素连接酶RGLG1和RGLG5通过控制磷酸酶PP2CA的周转来调节脱落酸信号。
IF 11.6 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-04 DOI: 10.1093/plcell/koaf192
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引用次数: 0
Expression of Concern: C2-Domain Abscisic Acid-Related Proteins Mediate the Interaction of PYR/PYL/RCAR Abscisic Acid Receptors with the Plasma Membrane and Regulate Abscisic Acid Sensitivity in Arabidopsis. 关注表达:c2结构域脱落酸相关蛋白介导拟南芥中PYR/PYL/RCAR脱落酸受体与质膜的相互作用并调节脱落酸敏感性。
IF 11.6 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-04 DOI: 10.1093/plcell/koaf191
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引用次数: 0
The Arabidopsis histone methylation reader MRG2 interacts with eIF4A3 to regulate alternative splicing and circadian rhythms. 拟南芥组蛋白甲基化解读器MRG2与eIF4A3相互作用,调节选择性剪接和昼夜节律。
IF 11.6 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-04 DOI: 10.1093/plcell/koaf209
Yaxue Huang, Jiabing Wu, Xiang Li, Jiachen Wang, Mengmeng Ma, Wen Jiang, Wen-Hui Shen, Yu Yu, Aiwu Dong

Alternative splicing (AS) is an important regulatory mechanism for fine-tuning gene transcription in eukaryotes. H3K36me3 affects AS, but the underlying mechanisms remain obscure. In this study, we showed that the Arabidopsis thaliana H3K36me3 reader protein MORF-RELATED GENE 2 (MRG2) directly interacts with eIF4A3, a component of the exon junction complex within the spliceosome. The eif4a3 mutant displays a late-flowering phenotype similar to that of the mrg1 mrg2 double mutant under long-day, but not short-day, photoperiod conditions. Transcriptome analysis showed that deleting either eIF4A3 or MRG1/MRG2 causes similar changes in gene transcription and AS, which are involved in diverse processes including circadian rhythm regulation and responses to environmental stimuli. Both eIF4A3 and MRG1/MRG2 are required for the AS of key circadian clock genes and the maintenance of an appropriate circadian rhythm. RNA immunoprecipitation sequencing (RIP-seq) showed that MRG1/MRG2 promote eIF4A3 binding to the transcripts of a set of genes, including the key circadian clock genes PSEUDO-RESPONSE REGULATOR 7 (PRR7) and PRR9. Moreover, eIF4A3 and MRG2 directly target and enhance each other's binding to PRR7 and PRR9 chromatin. Collectively, our findings reveal that the reader protein MRG2 recognizes histone methylation signals and recruits eIF4A3 to regulate co-transcriptional AS events, establishing a direct link between histone modification and the splicing machinery in plants.

选择性剪接(AS)是真核生物调控基因转录的重要机制。H3K36me3影响AS,但其潜在机制尚不清楚。在这项研究中,我们发现拟南芥H3K36me3读取器蛋白morf相关基因2 (MRG2)直接与剪接体内外显子连接复合物的组成部分eIF4A3相互作用。在长日照条件下,eif4a3突变体表现出与mrg1 mrg2双突变体相似的晚花表型,而不是短日照条件下。转录组分析显示,删除eIF4A3或MRG1/MRG2都会导致基因转录和AS的类似变化,这些变化涉及昼夜节律调节和对环境刺激的反应等多种过程。eIF4A3和MRG1/MRG2都是关键生物钟基因的AS和维持适当的昼夜节律所必需的。RNA免疫沉淀测序(RIP-seq)显示,MRG1/MRG2促进eIF4A3与一系列基因的转录本结合,包括关键的生物钟基因伪反应调节因子7 (PRR7)和PRR9。此外,eIF4A3和MRG2直接靶向并增强彼此与PRR7和PRR9染色质的结合。总的来说,我们的研究结果表明,阅读器蛋白MRG2识别组蛋白甲基化信号并招募eIF4A3来调节共转录AS事件,在植物组蛋白修饰和剪接机制之间建立了直接联系。
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引用次数: 0
Dark-responsive BGH2 and light-responsive BPG4: Taming the GLK1/2 master transcription factors for etioplast and chloroplast homeostasis. 暗适应BGH2和光响应BPG4:抑制GLK1/2主转录因子对病质体和叶绿体稳态的影响。
IF 11.6 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-04 DOI: 10.1093/plcell/koaf190
Jiajun Wang
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引用次数: 0
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Plant Cell
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