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The stromal side of the cytochrome b6f complex regulates state transitions. 细胞色素 b6f 复合物的基质侧调节状态转换。
IF 1 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-03 DOI: 10.1093/plcell/koae190
Alexis Riché, Louis Dumas, Soazig Malesinski, Guillaume Bossan, Céline Madigou, Francesca Zito, Jean Alric

In oxygenic photosynthesis, state transitions distribute light energy between PSI and PSII. This regulation involves reduction of the plastoquinone pool, activation of the state transitions 7 (STT7) protein kinase by the cytochrome (cyt) b6f complex, and phosphorylation and migration of light harvesting complexes II (LHCII). In this study, we show that in Chlamydomonas reinhardtii, the C-terminus of the cyt b6 subunit PetB acts on phosphorylation of STT7 and state transitions. We used site-directed mutagenesis of the chloroplast petB gene to truncate (remove L215b6) or elongate (add G216b6) the cyt b6 subunit. Modified complexes are devoid of heme ci and degraded by FTSH protease, revealing that salt bridge formation between cyt b6 (PetB) and Subunit IV (PetD) is essential to the assembly of the complex. In double mutants where FTSH is inactivated, modified cyt b6f accumulated but the phosphorylation cascade was blocked. We also replaced the arginine interacting with heme ci propionate (R207Kb6). In this modified complex, heme ci is present but the kinetics of phosphorylation are slower. We show that highly phosphorylated forms of STT7 accumulated transiently after reduction of the PQ pool and represent the active forms of the protein kinase. The phosphorylation of the LHCII targets is favored at the expense of the protein kinase, and the migration of LHCII toward PSI is the limiting step for state transitions.

在含氧光合作用中,状态转换在光系统 I 和光系统 II 之间分配光能。这种调节涉及质醌池的减少、细胞色素 b6f 复合物对状态转换 7(STT7)蛋白激酶的激活以及光收集复合物 II(LHCII)的磷酸化和迁移。在这里,我们发现在莱茵衣藻中,细胞色素 b6 亚基 PetB 的 C 端作用于 STT7 的磷酸化和状态转换。我们利用叶绿体 petB 基因的定点突变来截短(去除 L215b6)或延长(添加 G216b6)细胞 b6 亚基。改造后的复合物不含血红素 ci,并被 FTSH 蛋白酶降解,这表明细胞 b6(PetB)和亚基 IV(PetD)之间形成的盐桥是复合物组装的关键。在 FTSH 失活的双突变体中,修饰的细胞 b6f 积累,但磷酸化级联被阻断。我们还替换了与血红素 ci 丙酸盐(R207Kb6)相互作用的精氨酸。在这种经过修饰的复合物中,血红素 ci 存在,但磷酸化的动力学过程较慢。我们的研究表明,高磷酸化形式的 STT7 在 PQ 池减少后瞬时积累,代表了蛋白激酶的活性形式。LHCII 目标的磷酸化以牺牲蛋白激酶为代价,LHCII 向 PSI 的迁移是状态转换的限制步骤。
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引用次数: 0
How polymer structure affects secondary cell wall patterns: A look at transdifferentiating protoplasts. 聚合物结构如何影响次生细胞壁形态:透视原生质体的转分化。
IF 1 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-03 DOI: 10.1093/plcell/koae238
Arpita Yadav
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引用次数: 0
Alternating between even and odd ploidy levels switches on and off the recombination control, even near the centromeres. 偶数倍性水平和奇数倍性水平交替出现时,重组控制就会开启或关闭,甚至在中心粒附近也是如此。
IF 1 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-03 DOI: 10.1093/plcell/koae208
Franz Boideau, Virginie Huteau, Loeiz Maillet, Anael Brunet, Olivier Coriton, Gwenaëlle Deniot, Gwenn Trotoux, Maryse Taburel-Lodé, Frédérique Eber, Marie Gilet, Cécile Baron, Julien Boutte, Gautier Richard, Jean-Marc Aury, Caroline Belser, Karine Labadie, Jérôme Morice, Cyril Falentin, Olivier Martin, Matthieu Falque, Anne-Marie Chèvre, Mathieu Rousseau-Gueutin

Meiotic recombination is a key biological process in plant evolution and breeding, as it generates genetic diversity in each generation through the formation of crossovers (COs). However, due to their importance in genome stability, COs are highly regulated in frequency and distribution. We previously demonstrated that this strict regulation of COs can be modified, both in terms of CO frequency and distribution, in allotriploid Brassica hybrids (2n = 3x = 29; AAC) resulting from a cross between Brassica napus (2n = 4x = 38; AACC) and Brassica rapa (2n = 2x = 20; AA). Using the recently updated B. napus genome now including pericentromeres, we demonstrated that COs occur in these cold regions in allotriploids, as close as 375 kb from the centromere. Reverse transcription quantitative PCR (RT-qPCR) of various meiotic genes indicated that Class I COs are likely involved in the increased recombination frequency observed in allotriploids. We also demonstrated that this modified recombination landscape can be maintained via successive generations of allotriploidy (odd ploidy level). This deregulated meiotic behavior reverts to strict regulation in allotetraploid (even ploidy level) progeny in the second generation. Overall, we provide an easy way to manipulate tight recombination control in a polyploid crop.

减数分裂重组是植物进化和育种中的一个关键生物过程,因为它通过形成交叉(COs)在每一代中产生遗传多样性。然而,由于 COs 在基因组稳定性中的重要性,它们的频率和分布受到了严格的调控。我们之前证明,在由甘蓝(2n = 4x = 38; AACC)和芸苔(2n = 2x = 20; AA)杂交产生的异源三倍体芸苔杂交种(2n = 3x = 29; AAC)中,COs 的这种严格调控可以在 CO 频率和分布方面得到改变。我们利用最近更新的油菜基因组(现在包括中心粒)证明,在异源三倍体的这些冷区,离中心粒最接近的地方有 375 kb 的 CO。各种减数分裂基因的反转录定量 PCR(RT-qPCR)表明,异源三倍体中观察到的重组频率增加可能与 I 类 COs 有关。我们还证明,通过连续几代的异源三倍体(奇数倍性水平),可以维持这种改变了的重组景观。这种失调的减数分裂行为在第二代异源四倍体(偶倍性水平)后代中恢复到严格的调节状态。总之,我们提供了一种在多倍体作物中进行严格重组控制的简便方法。
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引用次数: 0
AGAMOUS-LIKE 24 senses continuous inductive photoperiod in the inflorescence meristem to promote anthesis in chrysanthemum. AGAMOUS-LIKE 24 能感知花序分生组织中的连续诱导光周期,促进菊花开花。
IF 1 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-03 DOI: 10.1093/plcell/koae235
Xuening Liu, Mingzheng Han, Tianhua Jiang, Lei Liu, Jiayi Luo, Ying Lu, Yafei Zhao, Cai-Zhong Jiang, Junping Gao, Bo Hong, Chao Ma

During the floral transition, many plant species including chrysanthemum (Chrysanthemum morifolium) require continuous photoperiodic stimulation for successful anthesis. Insufficient photoperiodic stimulation results in flower bud arrest or even failure. The molecular mechanisms underlying how continuous photoperiodic stimulation promotes anthesis are not well understood. Here, we reveal that in wild chrysanthemum (Chrysanthemum indicum), an obligate short-day (SD) plant, floral evocation is not limited to SD conditions. However, SD signals generated locally in the inflorescence meristem (IM) play a vital role in ensuring anthesis after floral commitment. Genetic analyses indicate that the florigen FLOWERING LOCUS T-LIKE3 (CiFTL3) plays an important role in floral evocation, but a lesser role in anthesis. Importantly, our data demonstrate that AGAMOUS-LIKE 24 (CiAGL24) is a critical component of SD signal perception in the IM to promote successful anthesis, and that floral evocation and anthesis are two separate developmental events in chrysanthemum. We further reveal that the central circadian clock component PSEUDO-RESPONSE REGULATOR 7 (CiPRR7) in the IM activates CiAGL24 expression in response to SD conditions. Moreover, our findings elucidate a negative feedback loop in which CiAGL24 and SUPPRESSOR OF OVEREXPRESSION OF CO 1 (CiSOC1) modulate LEAFY (CiLFY) expression. Together, our results demonstrate that the CiPRR7-CiAGL24 module is vital for sustained SD signal perception in the IM to ensure successful anthesis in chrysanthemum.

在花期过渡期间,包括菊花(Chrysanthemum morifolium)在内的许多植物物种都需要持续的光周期刺激才能成功开花。光周期刺激不足会导致花芽停止甚至失败。连续光周期刺激如何促进开花的分子机制尚不十分清楚。在这里,我们揭示了在野菊花(C. indicum)这种必须生长在短日照(SD)条件下的植物中,花的萌发并不局限于 SD 条件。然而,花序分生组织(IM)局部产生的短日照信号在确保花期承诺后的开花方面起着至关重要的作用。遗传分析表明,花原基 FLOWERING LOCUS T-LIKE3 (CiFTL3)在花唤醒中起着重要作用,但在开花中作用较小。重要的是,我们的数据证明 AGAMOUS-LIKE 24(CiAGL24)是 IM 中 SD 信号感知的关键组成部分,可促进成功开花,而且菊花的花唤醒和开花是两个独立的发育事件。我们还进一步揭示了昼夜节律时钟中枢元件 PSEUDO-RESPONSE REGULATOR 7(CiPRR7)可激活 CiAGL24 的表达,以应对自毁条件。此外,我们的研究结果还阐明了 CiAGL24 和 CO 1 过度表达抑制因子(CiSOC1)调节 LEAFY(CiLFY)表达的负反馈回路。总之,我们的研究结果表明,CiPRR7-CiAGL24 模块对于在 IM 中持续感知 SD 信号以确保菊花成功开花至关重要。
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引用次数: 0
Structure, function, and assembly of PSI in thylakoid membranes of vascular plants. 维管束植物类囊体膜中光电系统 I 的结构、功能和组装。
IF 1 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-03 DOI: 10.1093/plcell/koae169
David Rolo, Mark A Schöttler, Omar Sandoval-Ibáñez, Ralph Bock

The photosynthetic apparatus is formed by thylakoid membrane-embedded multiprotein complexes that carry out linear electron transport in oxygenic photosynthesis. The machinery is largely conserved from cyanobacteria to land plants, and structure and function of the protein complexes involved are relatively well studied. By contrast, how the machinery is assembled in thylakoid membranes remains poorly understood. The complexes participating in photosynthetic electron transfer are composed of many proteins, pigments, and redox-active cofactors, whose temporally and spatially highly coordinated incorporation is essential to build functional mature complexes. Several proteins, jointly referred to as assembly factors, engage in the biogenesis of these complexes to bring the components together in a step-wise manner, in the right order and time. In this review, we focus on the biogenesis of the terminal protein supercomplex of the photosynthetic electron transport chain, PSI, in vascular plants. We summarize our current knowledge of the assembly process and the factors involved and describe the challenges associated with resolving the assembly pathway in molecular detail.

光合作用装置由嵌入类囊体膜的多蛋白质复合物组成,在含氧光合作用中进行线性电子传递。从蓝藻到陆地植物,光合作用装置在很大程度上是保守的,对其中涉及的蛋白质复合物的结构和功能也有较深入的研究。相比之下,人们对该机制如何在类囊体膜中组装仍然知之甚少。参与光合作用电子传递的复合物由许多蛋白质、色素和氧化还原活性辅助因子组成,它们在时间和空间上高度协调的结合对于构建功能成熟的复合物至关重要。在这些复合体的生物生成过程中,有几种蛋白质(共同称为组装因子)按照正确的顺序和时间将各组分按部就班地组装在一起。在这篇综述中,我们将重点讨论维管植物光合电子传递链的末端蛋白超级复合物--光合系统 I(PSI)的生物生成过程。我们总结了目前对组装过程和相关因素的了解,并描述了与详细解析分子组装途径相关的挑战。
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引用次数: 0
Differential phosphorylation of Ca2+-permeable channel CYCLIC NUCLEOTIDE-GATED CHANNEL20 modulates calcium-mediated freezing tolerance in Arabidopsis. Ca2+渗透通道CNGC20的不同磷酸化调节拟南芥钙介导的冷冻耐受性。
IF 1 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-03 DOI: 10.1093/plcell/koae177
Yue Peng, Yuhang Ming, Bochen Jiang, Xiuyue Zhang, Diyi Fu, Qihong Lin, Xiaoyan Zhang, Yi Wang, Yiting Shi, Zhizhong Gong, Yanglin Ding, Shuhua Yang

Plants respond to cold stress at multiple levels, including increasing cytosolic calcium (Ca2+) influx and triggering the expression of cold-responsive genes. In this study, we show that the Ca2+-permeable channel CYCLIC NUCLEOTIDE-GATED CHANNEL20 (CNGC20) positively regulates freezing tolerance in Arabidopsis (Arabidopsis thaliana) by mediating cold-induced Ca2+ influx. Moreover, we demonstrate that the leucine-rich repeat receptor-like kinase PLANT PEPTIDE CONTAINING SULFATED TYROSINE1 RECEPTOR (PSY1R) is activated by cold, phosphorylating and enhancing the activity of CNGC20. The psy1r mutant exhibits decreased cold-evoked Ca2+ influx and freezing tolerance. Conversely, COLD-RESPONSIVE PROTEIN KINASE1 (CRPK1), a protein kinase that negatively regulates cold signaling, phosphorylates and facilitates the degradation of CNGC20 under prolonged periods of cold treatment, thereby attenuating freezing tolerance. This study thus identifies PSY1R and CRPK1 kinases that regulate CNGC20 activity and stability, respectively, thereby antagonistically modulating freezing tolerance in plants.

植物从多个层面对冷胁迫做出反应,包括增加细胞膜钙(Ca2+)流入和触发冷反应基因的表达。在这里,我们发现Ca2+渗透通道CYCLIC NUCLEOTIDE GATED CHANNEL20(CNGC20)通过介导冷诱导的Ca2+流入,积极调节拟南芥(Arabidopsis thaliana)的耐寒性。此外,我们还证明了富亮氨酸重复受体样激酶 PLANT PEPTIDE CONTAINING SULFATED TYROSINE1 RECEPTOR(PSY1R)被冷激活,使 CNGC20 磷酸化并增强其活性。psy1r突变体表现出冷诱发的 Ca2+ 流入减少和耐冻性降低。相反,冷反应蛋白激酶 1(CRPK1)是一种负调控冷信号转导的蛋白激酶,它在长时间的冷处理下磷酸化并促进 CNGC20 的降解,从而削弱耐冻性。因此,本研究发现 PSY1R 和 CRPK1 激酶可分别调节 CNGC20 的活性和稳定性,从而拮抗地调节植物的抗冻性。
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引用次数: 0
A pgr5 suppressor screen uncovers two distinct suppression mechanisms and links cytochrome b6f complex stability to PGR5. pgr5 抑制剂筛选发现了两种不同的抑制机制,并将细胞色素 b6f 复合物的稳定性与 PGR5 联系起来。
IF 1 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-03 DOI: 10.1093/plcell/koae098
Jan-Ferdinand Penzler, Belén Naranjo, Sabrina Walz, Giada Marino, Tatjana Kleine, Dario Leister

PROTON GRADIENT REGULATION5 (PGR5) is thought to promote cyclic electron flow, and its deficiency impairs photosynthetic control and increases photosensitivity of photosystem (PS) I, leading to seedling lethality under fluctuating light (FL). By screening for Arabidopsis (Arabidopsis thaliana) suppressor mutations that rescue the seedling lethality of pgr5 plants under FL, we identified a portfolio of mutations in 12 different genes. These mutations affect either PSII function, cytochrome b6f (cyt b6f) assembly, plastocyanin (PC) accumulation, the CHLOROPLAST FRUCTOSE-1,6-BISPHOSPHATASE1 (cFBP1), or its negative regulator ATYPICAL CYS HIS-RICH THIOREDOXIN2 (ACHT2). The characterization of the mutants indicates that the recovery of viability can in most cases be explained by the restoration of PSI donor side limitation, which is caused by reduced electron flow to PSI due to defects in PSII, cyt b6f, or PC. Inactivation of cFBP1 or its negative regulator ACHT2 results in increased levels of the NADH dehydrogenase-like complex. This increased activity may be responsible for suppressing the pgr5 phenotype under FL conditions. Plants that lack both PGR5 and DE-ETIOLATION-INDUCED PROTEIN1 (DEIP1)/NEW TINY ALBINO1 (NTA1), previously thought to be essential for cyt b6f assembly, are viable and accumulate cyt b6f. We suggest that PGR5 can have a negative effect on the cyt b6f complex and that DEIP1/NTA1 can ameliorate this negative effect.

PROTON GRADIENT REGULATION5(PGR5)被认为能促进循环电子流,其缺乏会损害光合控制并增加光系统(PS)I的光敏性,从而导致波动光(FL)下的幼苗致死。通过筛选拟南芥(Arabidopsis thaliana)抑制剂突变来挽救 pgr5 植物在波动光下的幼苗致死性,我们发现了 12 个不同基因的突变组合。这些突变影响了 PSII 功能、细胞色素 b6f(cyt b6f)组装、质花青素(PC)积累、CHLOROPLAST FRUCTOSE-1,6-BISPHOSPHATASE1(cFBP1)或其负调控因子 ATYPICAL CYS HIS-RICH THIOREDOXIN2(ACHT2)。突变体的特征表明,在大多数情况下,活力的恢复可以用 PSI 供体侧限制的恢复来解释,这种限制是由于 PSII、细胞 b6f 或 PC 的缺陷导致流向 PSI 的电子流减少造成的。cFBP1 或其负性调节因子 ACHT2 失活会导致 NADH 脱氢酶样复合物水平升高。这种活性的增加可能是抑制 FL 条件下 pgr5 表型的原因。同时缺乏 PGR5 和 DE-ETIOLATION-INDUCED PROTEIN1(DEIP1)/NEW TINY ALBINO1(NTA1)(以前认为它们对细胞 b6f 的组装至关重要)的植物可以存活并积累细胞 b6f。我们认为 PGR5 可对细胞 b6f 复合物产生负面影响,而 DEIP1/NTA1 可改善这种负面影响。
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引用次数: 0
Alternative electron pathways of photosynthesis power green algal CO2 capture. 光合作用的替代电子途径为绿藻捕获二氧化碳提供了动力。
IF 1 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-03 DOI: 10.1093/plcell/koae143
Gilles Peltier, Carolyne Stoffel, Justin Findinier, Sai Kiran Madireddi, Ousmane Dao, Virginie Epting, Amélie Morin, Arthur Grossman, Yonghua Li-Beisson, Adrien Burlacot

Microalgae contribute to about half of global net photosynthesis, which converts sunlight into the chemical energy (ATP and NADPH) used to transform CO2 into biomass. Alternative electron pathways of photosynthesis have been proposed to generate additional ATP that is required to sustain CO2 fixation. However, the relative importance of each alternative pathway remains elusive. Here, we dissect and quantify the contribution of cyclic, pseudo-cyclic, and chloroplast-to-mitochondrion electron flows for their ability to sustain net photosynthesis in the microalga Chlamydomonas reinhardtii. We show that (i) each alternative pathway can provide sufficient additional energy to sustain high CO2 fixation rates, (ii) the alternative pathways exhibit cross-compensation, and (iii) the activity of at least one of the three alternative pathways is necessary to sustain photosynthesis. We further show that all pathways have very different efficiencies at energizing CO2 fixation, with the chloroplast-mitochondrion interaction being the most efficient. Overall, our data lay bioenergetic foundations for biotechnological strategies to improve CO2 capture and fixation.

微藻的光合作用约占全球净光合作用的一半,它将阳光转化为化学能(ATP 和 NADPH),用于将二氧化碳转化为生物质。人们提出了光合作用的替代电子途径,以产生维持二氧化碳固定所需的额外 ATP。然而,每种替代途径的相对重要性仍然难以确定。在这里,我们剖析并量化了环状电子流、假环状电子流和叶绿体-线粒体电子流对维持微藻类衣藻净光合作用的贡献。我们的研究表明:(i) 每种替代途径都能提供足够的额外能量,以维持较高的二氧化碳固定率;(ii) 替代途径之间存在交叉补偿;(iii) 三种替代途径中至少有一种途径的活性是维持光合作用所必需的。我们进一步表明,所有途径在为二氧化碳固定提供能量方面的效率大不相同,其中叶绿体-线粒体相互作用的效率最高。总之,我们的数据为改进二氧化碳捕获和固定的生物技术战略奠定了生物能基础。
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引用次数: 0
RESISTANCE TO PHYTOPHTHORA1 promotes cytochrome b559 formation during early photosystem II biogenesis in Arabidopsis. 拟南芥早期光合系统 II 生物发生过程中,抗性 PHYTOPHTHORA1 促进了细胞色素 b559 的形成。
IF 1 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-03 DOI: 10.1093/plcell/koae196
Li-Ping Che, Junxiang Ruan, Qiang Xin, Lin Zhang, Fudan Gao, Lujuan Cai, Jianing Zhang, Shiwei Chen, Hui Zhang, Jean-David Rochaix, Lianwei Peng

As an essential intrinsic component of photosystem II (PSII) in all oxygenic photosynthetic organisms, heme-bridged heterodimer cytochrome b559 (Cyt b559) plays critical roles in the protection and assembly of PSII. However, the underlying mechanisms of Cyt b559 assembly are largely unclear. Here, we characterized the Arabidopsis (Arabidopsis thaliana) rph1 (resistance to Phytophthora1) mutant, which was previously shown to be susceptible to the oomycete pathogen Phytophthora brassicae. Loss of RPH1 leads to a drastic reduction in PSII accumulation, which can be primarily attributed to the defective formation of Cyt b559. Spectroscopic analyses showed that the heme level in PSII supercomplexes isolated from rph1 is significantly reduced, suggesting that RPH1 facilitates proper heme assembly in Cyt b559. Due to the loss of RPH1-mediated processes, a covalently bound PsbE-PsbF heterodimer is formed during the biogenesis of PSII. In addition, rph1 is highly photosensitive and accumulates elevated levels of reactive oxygen species under photoinhibitory-light conditions. RPH1 is a conserved intrinsic thylakoid protein present in green algae and terrestrial plants, but absent in Synechocystis, and it directly interacts with the subunits of Cyt b559. Thus, our data demonstrate that RPH1 represents a chloroplast acquisition specifically promoting the efficient assembly of Cyt b559, probably by mediating proper heme insertion into the apo-Cyt b559 during the initial phase of PSII biogenesis.

作为所有含氧光合生物光系统 II(PSII)的重要固有成分,半桥接异源二聚体细胞色素 b559(Cyt b559)在保护和组装 PSII 方面发挥着关键作用。然而,Cyt b559 组装的基本机制尚不清楚。在这里,我们研究了拟南芥(Arabidopsis thaliana)rph1(对疫霉菌的抗性1)突变体的特征,该突变体以前曾被证明对卵菌病原体黄铜疫霉菌(Phytophthora brassicae)易感。RPH1 的缺失导致 PSII 积累急剧减少,这主要归因于 Cyt b559 的形成缺陷。光谱分析显示,从 rph1 分离出来的 PSII 超级复合物中的血红素水平显著降低,这表明 RPH1 促进了 Cyt b559 中血红素的正确组装。由于失去了 RPH1 介导的过程,在 PSII 的生物发生过程中形成了共价结合的 PsbE-PsbF 异二聚体。此外,rph1 对光高度敏感,在光抑制条件下会积累较高水平的 ROS。RPH1 是存在于绿藻和陆生植物中的一种保守的固有类囊体蛋白,但在 Synechocystis 中并不存在,它直接与 Cyt b559 的亚基相互作用。因此,我们的数据表明,RPH1 是一种叶绿体获取物,专门促进 Cyt b559 的有效组装,可能是通过在 PSII 生物发生的初始阶段介导血红素正确插入到 apo-Cyt b559 中。
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引用次数: 0
Population-level exploration of alternative splicing and its unique role in controlling agronomic traits of rice. 替代剪接的群体水平探索及其在控制水稻农艺性状中的独特作用。
IF 1 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-03 DOI: 10.1093/plcell/koae181
Hong Zhang, Wu Chen, De Zhu, Bintao Zhang, Qiang Xu, Chuanlin Shi, Huiying He, Xiaofan Dai, Yilin Li, Wenchuang He, Yang Lv, Longbo Yang, Xinglan Cao, Yan Cui, Yue Leng, Hua Wei, Xiangpei Liu, Bin Zhang, Xianmeng Wang, Mingliang Guo, Zhipeng Zhang, Xiaoxia Li, Congcong Liu, Qiaoling Yuan, Tianyi Wang, Xiaoman Yu, Hongge Qian, Qianqian Zhang, Dandan Chen, Guanjing Hu, Qian Qian, Lianguang Shang

Alternative splicing (AS) plays crucial roles in regulating various biological processes in plants. However, the genetic mechanisms underlying AS and its role in controlling important agronomic traits in rice (Oryza sativa) remain poorly understood. In this study, we explored AS in rice leaves and panicles using the rice minicore collection. Our analysis revealed a high level of transcript isoform diversity, with approximately one-fifth of the potential isoforms acting as major transcripts in both tissues. Regarding the genetic mechanism of AS, we found that the splicing of 833 genes in the leaf and 1,230 genes in the panicle was affected by cis-genetic variation. Twenty-one percent of these AS events could only be explained by large structural variations. Approximately 77.5% of genes with significant splicing quantitative trait loci (sGenes) exhibited tissue-specific regulation, and AS can cause 26.9% (leaf) and 23.6% (panicle) of sGenes to have altered, lost, or gained functional domains. Additionally, through splicing-phenotype association analysis, we identified phosphate-starvation-induced RING-type E3 ligase (OsPIE1; LOC_Os01g72480), whose splicing ratio was significantly associated with plant height. In summary, this study provides an understanding of AS in rice and its contribution to the regulation of important agronomic traits.

替代剪接(AS)在调控植物的各种生物过程中发挥着至关重要的作用。然而,人们对替代剪接的遗传机制及其在控制水稻(Oryza sativa)重要农艺性状中的作用仍然知之甚少。在本研究中,我们利用水稻微型核心集探索了水稻叶片和圆锥花序中的AS。我们的分析揭示了转录本同工酶的高度多样性,约五分之一的潜在同工酶在这两种组织中充当主要转录本。关于AS的遗传机制,我们发现叶片中833个基因和圆锥花序中1230个基因的剪接受到顺式遗传变异的影响。在这些AS事件中,有21%只能通过较大的结构变异来解释。约77.5%的具有显著剪接数量性状位点(sGenes)的基因表现出组织特异性调控,AS可导致26.9%(叶片)和23.6%(圆锥花序)的sGenes改变、丢失或获得功能域。此外,通过剪接-表型关联分析,我们发现磷酸盐饥饿诱导的RING型E3连接酶(OsPIE1;LOC_Os01g72480)的剪接比率与植株高度显著相关。总之,本研究有助于了解水稻中的 AS 及其对重要农艺性状调控的贡献。
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Plant Cell
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