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Genetic analyses of anthocyanin content using polyploid GWAS followed by QTL detection in the sweetpotato (Ipomoea batatas L.) storage root 甘薯贮藏根花青素含量的多倍体GWAS - QTL遗传分析
IF 0.6 Q3 PLANT SCIENCES Pub Date : 2020-01-01 DOI: 10.3117/plantroot.14.11
Emdadul M. Haque, E. Yamamoto, K. Shirasawa, Hiroaki Tabuchi, U. Yoon, S. Isobe, Masaru Tanaka
: Genetic studies on the purple-fleshed sweetpotato ( Ipomoea batatas L.), which is rich in anthocyanin (AN) in the storage root, were performed by polyploid GWAS based on the allele dosage probability using 59,675 SNPs obtained from 94 F 1 progenies between the cultivars ‘Konaishin’ (which has a high yield but no AN) and ‘Akemurasaki’ (which has a high AN content but low to moderate yield). The distribution of relative AN content was highly biased, with 60% of clones showing a low to undetectable level (A 530 < 0.5). Fifty-nine SNPs from six signals on homologous groups (HGs) 3, 5 (one major and one smaller sig-nal), 7, 13, and 15 were strongly associated with the relative AN content. Twelve SNPs from the major signal and one from the smaller signal of HG 5 were further detected by QTL analysis. In a database search of the AN biosynthesis gene, transcription factors IbMYB1 and IbWD40 and AN structural genes IbF3H and IbDFR were located on HG 5, suggesting that an SNP marker or markers from HG 5 might be tightly linked to candidate gene(s) homologous to one of these transcription factors and AN structural genes as a major factor in determining AN accumulation in the storage roots. These results would enhance our understanding of the underlying genetic basis of AN accumulation in the storage roots of sweetpotatoes, and the SNP markers found here, especially 13 SNPs from HG 5, would be a potential platform for future marker-assisted selection for breeding high-AN sweetpotato varieties.
利用高产不含AN的“Konaishin”和高产不含AN的“Akemurasaki”94个F - 1后代的59,675个单核苷酸多态性,采用多倍体GWAS方法对贮藏根中花青素含量较高的紫肉甘薯(Ipomoea batatas L.)进行了等位基因剂量概率遗传研究。相对AN含量的分布高度偏倚,60%的克隆显示低至不可检测水平(a530 < 0.5)。同源基团(HGs) 3、5(一个大信号和一个小信号)、7、13和15的6个信号中的59个snp与相对AN含量密切相关。通过QTL分析进一步检测到来自HG 5主信号的12个snp和来自较小信号的1个snp。在对AN生物合成基因的数据库搜索中,转录因子IbMYB1和IbWD40以及AN结构基因IbF3H和IbDFR位于HG 5上,这表明HG 5上的一个或多个SNP标记可能与这些转录因子和AN结构基因同源的候选基因紧密相连,是决定AN在贮藏根中积累的主要因素。这些结果将加深我们对甘薯贮藏根中AN积累的潜在遗传基础的理解,并且该研究发现的SNP标记,特别是来自HG 5的13个SNP标记,将为未来标记辅助选择高AN甘薯品种提供潜在的平台。
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引用次数: 6
Terminal regions of chromosome arms 6AL and 6BL carry QTL affecting seminal root angle in wheat (Triticum aestivum L.) 小麦(Triticum aestium L.)染色体臂6AL和6BL末端区携带影响种子根角的QTL
IF 0.6 Q3 PLANT SCIENCES Pub Date : 2020-01-01 DOI: 10.3117/plantroot.14.23
M. Mori, A. Oyanagi, Emdadul M. Haque, K. Kawaguchi, H. Miura, Fumitaka Abe
: The identification of genetic factors affecting deep root systems is needed to improve adaptability to drought stress. In wheat ( Triticum aestivum L.), seminal root angle (SRA), which can be easily measured at the seedling stage, is a useful proxy for understanding the mature root system architecture. In the present study, we attempted to find a genetic variation in the vertical distribution of seminal roots and to determine chromosomal positions involved in a variation of SRA using ditelosomic (Dt) lines and deletion lines of wheat cultivar Chinese Spring (CS). SRA of CS and 31 Dt lines were estimated in a pot experiment using the basket method. When SRA was measured separately for the primary, first pair, and second pair of semi nal roots, it was found that the genetic variation was the largest in the first pair of seminal roots fol lowed by the second pair of seminal roots. In con-trast, there were no genetic differences in the SRA of the primary root between the CS and CS Dt lines. Compared to CS, which had a small SRA, Dt5BL, Dt6AS, Dt6BS, and Dt6DS displayed significantly larger SRA, indicating that the deficient chromosome arms 5BS, 6AL, 6BL, and 6DL appeared to carry quantitative trait loci (QTLs) affect ing SRA. Furthermore, the terminal regions of chromosome arms 6AL and 6BL were found to carry QTLs responsible for a small SRA. Using the QTLs information obtained in this study, novel genes may be isolated from wheat.
为提高植物根系对干旱胁迫的适应能力,需要确定影响深层根系的遗传因素。在小麦(Triticum aestivum L.)中,种子根角(SRA)是了解小麦成熟根系结构的重要指标,可以在苗期进行测量。在本研究中,我们试图找到种子根垂直分布的遗传变异,并确定与SRA变异有关的染色体位置,使用双染色体系(Dt)和缺失系(CS)进行研究。在盆栽试验中,用筐法估计了CS和31个Dt系的SRA。分别测定初生、第一对和第二对半种子根的SRA,发现遗传变异最大的是第一对种子根,其次是第二对种子根。相比之下,CS系和CS系Dt系主根SRA没有遗传差异。与SRA较小的CS相比,Dt5BL、Dt6AS、Dt6BS和Dt6DS的SRA明显较大,说明缺陷染色体臂5BS、6AL、6BL和6DL可能携带影响SRA的qtl。此外,发现染色体臂6AL和6BL的末端区域携带负责小SRA的qtl。利用本研究获得的qtl信息,可以从小麦中分离出新的基因。
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引用次数: 1
Effects of ratoon harvesting on the root systems of processing spinach 采收对加工菠菜根系的影响
IF 0.6 Q3 PLANT SCIENCES Pub Date : 2019-01-01 DOI: 10.3117/plantroot.13.23
Takayuki Suzuki, Erika Kamada, Takanori Ishii
: The mechanical harvesting of processing spinach (spinach used in production of processed food) is potentially becoming a common practice in Japan. Root distribution affects water and nutrient absorption, but how the roots spread in the soil profile during the regrowth period of spinach remains unknown. In this study, we investigate the root systems of processing spinach in topsoil (5 and 15 cm deep) and deeper soil layers (25, 35, 45, and 55 cm deep) cultivated using ratoon harvesting system. The total root length densities (calculated using the average of the densities at 0 and 15 cm horizontal distance from the row for each depth) in the second harvest were more than two-fold greater than those in the first harvest. The root length percentage in the topsoil and root depth indexes indicate that root systems are in shallower soil layers at the second harvest than at first har -vest.
在日本,机械收割加工菠菜(用于加工食品生产的菠菜)有可能成为一种普遍做法。根系分布影响水分和养分的吸收,但在菠菜再生期间根系在土壤剖面中的分布情况尚不清楚。在本研究中,我们研究了在耕层土壤(5和15 cm深)和深层土壤(25、35、45和55 cm深)中使用再生收获系统栽培的加工菠菜的根系。第二次收获的总根长密度(利用距行水平距离0和15cm处每一深度密度的平均值计算)比第一次收获的根长密度大2倍以上。表层土壤根长百分比和根深指数表明,第二次收获时根系位于较浅的土层中。
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引用次数: 2
Effect of strontium on the growth, ion balance, and suberin induction in Solanum lycopersicum 锶对茄生长、离子平衡及亚绿素诱导的影响
IF 0.6 Q3 PLANT SCIENCES Pub Date : 2019-01-01 DOI: 10.3117/plantroot.13.9
Takeshi Nagata
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引用次数: 6
Promotion of adventitious root formation in root-cut mung bean seedlings by a commercial alkaline hydrolysis product of soy oil and its ingredients, unsaturated long-chain fatty acids 豆油碱性水解产物及其成分不饱和长链脂肪酸对切根绿豆幼苗不定根形成的促进作用
IF 0.6 Q3 PLANT SCIENCES Pub Date : 2019-01-01 DOI: 10.3117/plantroot.13.15
S. Satoh, Taira Okubo, Yoshihiro Nomura
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引用次数: 1
The relationship between individual root anatomy and fine root system development in blueberry seedlings: dominance of diarch roots in initial root systems 蓝莓幼苗单根解剖与细根发育的关系:初生根系中双根的优势
IF 0.6 Q3 PLANT SCIENCES Pub Date : 2019-01-01 DOI: 10.3117/PLANTROOT.13.1
Baba Takashi, Nakaba Satoshi, Noma Satoshi, Funada Ryo, Ban Takuya
: Heterogeneity of individual root traits (heterorhizy) is thought to be one of the most important mechanisms that maintain the functional gradients in fine root systems. It is necessary to know heterorhizy and its relation to the root system architecture in seedlings, because it is the initial form of fine root development. Herein, we investi gated individual root traits and the root system architecture of blueberry seedlings by using the protoxylem grouping. Most individual roots were diarch but some laterals were monarch. Compared to the monarch, the diarch roots had significantly larger diameters and tissues, and over half of them exhibited secondary growth. In other words, frameworks of the blueberry seedlings were diarch, although those of cuttings had been at least triarch as seen in our previous study. The employment of diarch frameworks may optimize investment for root system expansion of blueberry seedlings. Our results imply ontogenetic dynamics of heterorhizy in blueberries.
单根性状的异质性(heterorhizy)被认为是维持细根系统功能梯度的重要机制之一。杂种结构是细根发育的初始形式,因此有必要了解杂种结构及其与幼苗根系结构的关系。以蓝莓幼苗为研究对象,利用原生木质部分组研究了蓝莓幼苗的单根性状和根系结构。大多数单根为双根,但一些侧根为君主。与黑脉金斑蝶根相比,双根根的直径和组织明显增大,且有一半以上的根呈现次生生长。换句话说,尽管我们在之前的研究中看到插枝的框架至少是三拱形的,但蓝莓幼苗的框架是双拱形的。采用diarch框架可以优化蓝莓幼苗根系扩展的投资。我们的结果暗示了蓝莓杂种的个体发生动力学。
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引用次数: 4
Biotin supplementation alters root system architecture and development in Arabidopsis thaliana 补充生物素改变拟南芥根系结构和发育
IF 0.6 Q3 PLANT SCIENCES Pub Date : 2019-01-01 DOI: 10.3117/plantroot.13.29
L. F. Ruíz-Herrera, María G. Hernández-Equihua, Daniel Boone-Villa, Gema C. Manuel Jacobo, Asdrúbal Aguilera-Méndez
Biotin is a member of the vitamin Bcomplex family that acts as a cofactor of carboxylases and is essential in the metabolism of all organisms. In addition to its essential metabolic functions, biotin has been suggested to play a critical role in regulating gene expression in plants and animals. However, all studies in plants have been conducted under biotin deficiency. Therefore, we hypothesized that exogenously supplied biotin also exerts non-enzymological functions similar to those reported in animals, regulating root growth and development in Arabidopsis thaliana. To test this hypothesis, we evaluated the effects of the biotin supply on seedlings and analyzed the root architecture. Biotin supplementation inhibited root elongation and promoted lateral root formation in a concentration-dependent manner. Inhibited primary root elongation was correlated with decreased expression of the cell cycle genes CycB1;1:uidA and cell expansion gene pAtExp7::uidA, and depended on the concentration of biotin. Viability tests with AtHisH2B:YFP showed that the meristem was depleted. However, biotin supplementation did not affect the concentration of chlorophyll but had a slight inhibitory effect on foliage growth and increased the production of reactive oxygen species (ROS) at the apex of primary roots. Our study provides the first evidence of functions of biotin supplementation in plants in addition to its catalytic role as an enzyme cofactor, likely advancing our understanding of the biological functions of biotin.
生物素是维生素b复合物家族的一员,作为羧化酶的辅助因子,在所有生物体的新陈代谢中都是必不可少的。生物素除了具有重要的代谢功能外,还被认为在调节植物和动物的基因表达方面起着关键作用。然而,所有的植物研究都是在生物素缺乏的情况下进行的。因此,我们假设外源供应的生物素也具有与动物相似的非酶学功能,调节拟南芥的根生长和发育。为了验证这一假设,我们评估了生物素供应对幼苗的影响,并分析了根系构型。补充生物素抑制根伸长,促进侧根形成,并呈浓度依赖性。初生根伸长受到抑制与细胞周期基因CycB1;1:uidA和细胞扩增基因pAtExp7::uidA表达降低相关,并与生物素浓度有关。用AtHisH2B:YFP进行活力测试显示分生组织被耗尽。然而,添加生物素对叶绿素浓度没有影响,但对叶片生长有轻微的抑制作用,并增加了初生根顶端活性氧(ROS)的产生。我们的研究首次证明了生物素在植物中除了作为酶辅助因子的催化作用外,还具有补充生物素的功能,这可能会促进我们对生物素生物学功能的理解。
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引用次数: 1
Quantitative evaluation of the hop (Humulus lupulus L.) root system based on wall profile method 基于壁形法的啤酒花根系定量评价
IF 0.6 Q3 PLANT SCIENCES Pub Date : 2018-01-01 DOI: 10.3117/PLANTROOT.12.11
K. Koie, Takao Myoda, H. Yoshida, Hirotake Itoh
: Hop cones are an indispensable raw material used for beer brewing. Since the hop plant is a minor crop, expansion habit of the hop root system has not been well investigated. In this study, we observed and analyzed the root systems of two major hop cultivars in Hokkaido, Little Star and Furano Special, using the wall profile method and root depth index. The results suggest differences in expansion habit of the hop root between the two hop cultivars, which has not been reported previously. The results also indicate that the different responses in cone yield to precipitation between the two hop cultivars may be derived from their differences in root expansion habit. The results of this preliminary study support the view that a better understanding of the hop root system could lead to improved productivity of hops via the development of agronomical techniques or genotypes.
啤酒花锥是酿造啤酒不可缺少的原料。由于啤酒花是一种小型作物,对啤酒花根系的生长习性还没有很好的研究。本研究采用壁型法和根深指数对北海道两个主要啤酒花品种小星和富良野的根系进行了观察和分析。结果表明,两个啤酒花品种之间的啤酒花根扩张习性存在差异,这在以前没有报道过。结果还表明,两种啤酒花品种的球果产量对降水的不同响应可能源于它们根系扩张习性的差异。这项初步研究的结果支持这样一种观点,即更好地了解啤酒花根系可以通过发展农艺技术或基因型来提高啤酒花的生产力。
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引用次数: 1
Underplanted silver fir and common beech cause changes in root stratification and morphology in mature spruce stands 在成熟云杉林分下种植的银杉和普通山毛榉引起了根系分层和形态的变化
IF 0.6 Q3 PLANT SCIENCES Pub Date : 2018-01-01 DOI: 10.3117/PLANTROOT.12.21
P. Jaloviar, S. Kucbel, J. Vencurik, Mariana Kýpeťová, Zuzana Parobeková, J. Pittner, M. Saniga, Denisa Sedmáková
: In this study we analysed changes in dis tribution and morphological properties of fine roots caused by underplanting of a 110-year-old Norway spruce monoculture by silver fir and common beech. Three different stand structures were investigated: mature established each quantified ic were calculated. Root-to-root interaction of spruce and underplanted species led to differences in verti cal distribution of roots towards the more homoge nous root density in investigated profile with clear shifting of beech and fir roots into deeper soil lay -ers. Cumulative root fractions of fir and beech in up per 20 cm were lower than those of Norway spruce. The share of spruce roots in depth under 20 cm never exceeded 20%. The co-occurrence of beech and spruce in small spots was about twice as fre quent as the co-occurrence of spruce with fir. We found differences in SRL and SSA between broad leaves (beech) and conifers, while the values of beech morphological parameters increased signifi -cantly, when mixed with spruce. We assume that the competitive strategy of beech is based in changing its root morphology, whereas silver fir is inclined to extend its biomass.
本研究分析了银杉和普通山毛榉对110年树龄挪威云杉的细根分布和形态特征的影响。研究了三种不同的林分结构,并对各林分结构进行了量化计算。云杉和林下树种的根-根相互作用导致根系垂直分布的差异,在调查剖面中,山毛榉和冷杉的根系明显向较深的土壤层转移,根系密度更均匀。杉木和山毛榉每20cm的累积根分数低于挪威云杉。云杉根系深度在20厘米以下的比例从未超过20%。山毛榉和云杉在小点上共现的频率大约是云杉和冷杉共现的两倍。我们发现阔叶(山毛榉)和针叶树在SRL和SSA上存在差异,而山毛榉的形态参数值在与云杉混合后显著增加。我们假设山毛榉的竞争策略是基于改变其根形态,而银杉倾向于扩大其生物量。
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引用次数: 1
Physiological and biochemical characterization of rootlets response to salt stress in two Medicago truncatula Gaertn. ecotypes 两种凤仙花根系对盐胁迫响应的生理生化特征。生态型
IF 0.6 Q3 PLANT SCIENCES Pub Date : 2018-01-01 DOI: 10.3117/PLANTROOT.12.1
A. A. Amouri, E. Gonzalez, Seghir Hadjadj Aoul
Legumes are very important plants both ecologically and agriculturally because they are able to interact symbiotically with rhizobia for biological nitrogen fixation and soil fertilization. Medicago truncatula Gaertn. is an important model legume rich in protein. Salinity represents, today, the major cause of land degradation and crop productivity limitation around the world and affects physiology and metabolism in legumes. In this study, we analyzed the physiological and biochemical responses of rootlets in two contrasting ecotypes of Medicago truncatula (Tru 131, tolerant and Jemalong, sensitive) to different level of NaCl, (68, 102 and 137 mM). Results showed that the tolerant ecotype has a lower water potential than Jemalong. Root protein content of Tru 131 was decreased than Jemalong, this can be explained by accumulation of protein oxidation in the sensitive genotype. Moreover, NaCl increased guaiacol peroxidase activity GPX in rootlets of Tru 131, this enzyme has a protective role against the molecules ROS accumulated during oxidative stress. On the other hand, under salt stress the total content of ascorbate (ASC + DHA) and Glutathione (GSH + GSSG) was increased in the tolerant genotype Tru 131 compared to Jemalong. These results show how the tolerant genotype activate the antioxidative defense system at root level against damages caused by oxidative stress under salinity.
{"title":"Physiological and biochemical characterization of rootlets response to salt stress in two Medicago truncatula Gaertn. ecotypes","authors":"A. A. Amouri, E. Gonzalez, Seghir Hadjadj Aoul","doi":"10.3117/PLANTROOT.12.1","DOIUrl":"https://doi.org/10.3117/PLANTROOT.12.1","url":null,"abstract":"Legumes are very important plants both ecologically and agriculturally because they are able to interact symbiotically with rhizobia for biological nitrogen fixation and soil fertilization. Medicago truncatula Gaertn. is an important model legume rich in protein. Salinity represents, today, the major cause of land degradation and crop productivity limitation around the world and affects physiology and metabolism in legumes. In this study, we analyzed the physiological and biochemical responses of rootlets in two contrasting ecotypes of Medicago truncatula (Tru 131, tolerant and Jemalong, sensitive) to different level of NaCl, (68, 102 and 137 mM). Results showed that the tolerant ecotype has a lower water potential than Jemalong. Root protein content of Tru 131 was decreased than Jemalong, this can be explained by accumulation of protein oxidation in the sensitive genotype. Moreover, NaCl increased guaiacol peroxidase activity GPX in rootlets of Tru 131, this enzyme has a protective role against the molecules ROS accumulated during oxidative stress. On the other hand, under salt stress the total content of ascorbate (ASC + DHA) and Glutathione (GSH + GSSG) was increased in the tolerant genotype Tru 131 compared to Jemalong. These results show how the tolerant genotype activate the antioxidative defense system at root level against damages caused by oxidative stress under salinity.","PeriodicalId":20205,"journal":{"name":"Plant Root","volume":"10 1","pages":"1-10"},"PeriodicalIF":0.6,"publicationDate":"2018-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3117/PLANTROOT.12.1","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"69621006","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
期刊
Plant Root
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