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Controlling NMR spin systems for quantum computation 为量子计算控制核磁共振自旋系统
IF 6.1 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-02-09 DOI: 10.1016/j.pnmrs.2024.02.002
Jonathan A. Jones

Nuclear magnetic resonance is arguably both the best available quantum technology for implementing simple quantum computing experiments and the worst technology for building large scale quantum computers that has ever been seriously put forward. After a few years of rapid growth, leading to an implementation of Shor’s quantum factoring algorithm in a seven-spin system, the field started to reach its natural limits and further progress became challenging. Rather than pursuing more complex algorithms on larger systems, interest has now largely moved into developing techniques for the precise and efficient manipulation of spin states with the aim of developing methods that can be applied in other more scalable technologies and within conventional NMR. However, the user friendliness of NMR implementations means that they remain popular for proof-of-principle demonstrations of simple quantum information protocols.

可以说,核磁共振既是实现简单量子计算实验的最佳量子技术,也是迄今为止被认真提出的构建大规模量子计算机的最差技术。经过几年的快速发展,肖尔的量子因式分解算法在七旋系统中得以实现,量子计算领域开始达到其自然极限,进一步的进展变得具有挑战性。与其在更大的系统上追求更复杂的算法,现在人们的兴趣主要转移到开发精确、高效操纵自旋态的技术上,目的是开发可应用于其他更可扩展技术和传统 NMR 的方法。然而,核磁共振实施的用户友好性意味着它们在简单量子信息协议的原理验证演示中仍然很受欢迎。
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引用次数: 0
Studying protein stability in crowded environments by NMR 利用核磁共振研究拥挤环境中的蛋白质稳定性
IF 6.1 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-02-08 DOI: 10.1016/j.pnmrs.2024.01.001
Guohua Xu, Kai Cheng, Maili Liu, Conggang Li

Most proteins perform their functions in crowded and complex cellular environments where weak interactions are ubiquitous between biomolecules. These complex environments can modulate the protein folding energy landscape and hence affect protein stability. NMR is a nondestructive and effective method to quantify the kinetics and equilibrium thermodynamic stability of proteins at an atomic level within crowded environments and living cells. Here, we review NMR methods that can be used to measure protein stability, as well as findings of studies on protein stability in crowded environments mimicked by polymer and protein crowders and in living cells. The important effects of chemical interactions on protein stability are highlighted and compared to spatial excluded volume effects.

大多数蛋白质都是在拥挤而复杂的细胞环境中发挥功能的,在这种环境中,生物大分子之间的弱相互作用无处不在。这些复杂的环境会改变蛋白质的折叠能谱,从而影响蛋白质的稳定性。核磁共振是一种无损且有效的方法,可在原子水平上量化蛋白质在拥挤环境和活细胞中的动力学和平衡热力学稳定性。在此,我们回顾了可用于测量蛋白质稳定性的核磁共振方法,以及在聚合物和蛋白质拥挤器模拟的拥挤环境和活细胞中蛋白质稳定性的研究结果。我们强调了化学相互作用对蛋白质稳定性的重要影响,并将其与空间排除体积效应进行了比较。
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引用次数: 0
Advanced solid-state NMR spectroscopy and its applications in zeolite chemistry 先进固体核磁共振光谱及其在沸石化学中的应用
IF 6.1 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2023-11-22 DOI: 10.1016/j.pnmrs.2023.11.001
Mingji Zheng , Yueying Chu , Qiang Wang , Yongxiang Wang , Jun Xu , Feng Deng

Solid-state NMR spectroscopy (ssNMR) can provide details about the structure, host–guest/guest–guest interactions and dynamic behavior of materials at atomic length scales. A crucial use of ssNMR is for the characterization of zeolite catalysts that are extensively employed in industrial catalytic processes. This review aims to spotlight the recent advancements in ssNMR spectroscopy and its application to zeolite chemistry. We first review the current ssNMR methods and techniques that are relevant to characterize zeolite catalysts, including advanced multinuclear and multidimensional experiments, in situ NMR techniques and hyperpolarization methods. Of these, the methodology development on half-integer quadrupolar nuclei is emphasized, which represent about two-thirds of stable NMR-active nuclei and are widely present in catalytic materials. Subsequently, we introduce the recent progress in understanding zeolite chemistry with the aid of these ssNMR methods and techniques, with a specific focus on the investigation of zeolite framework structures, zeolite crystallization mechanisms, surface active/acidic sites, host–guest/guest–guest interactions, and catalytic reaction mechanisms.

固体核磁共振光谱(ssNMR)可以在原子长度尺度上提供材料的结构、主客体/客体相互作用和动态行为的细节。ssNMR的一个重要用途是对工业催化过程中广泛使用的沸石催化剂进行表征。本文综述了ssNMR光谱及其在沸石化学中的应用研究进展。我们首先回顾了目前与沸石催化剂表征相关的ssNMR方法和技术,包括先进的多核和多维实验、原位核磁共振技术和超极化方法。其中,强调了半整数四极核的方法发展,它们约占稳定核磁共振活性核的三分之二,广泛存在于催化材料中。随后,我们介绍了这些ssNMR方法和技术在理解沸石化学方面的最新进展,重点研究了沸石框架结构、沸石结晶机制、表面活性/酸性位点、主-客/客-客相互作用和催化反应机制。
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引用次数: 0
Micron-scale magnetic resonance imaging based on low temperatures and dynamic nuclear polarization 基于低温和动态核极化的微米级磁共振成像
IF 6.1 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2023-11-01 DOI: 10.1016/j.pnmrs.2023.10.001
Robert Tycko

Extension of magnetic resonance imaging (MRI) techniques to the single micron scale has been the goal of research in multiple laboratories over several decades. It has proven difficult to achieve isotropic spatial resolution better than 3.0 μm in inductively-detected MRI near 300 K, even with well-behaved test samples, microcoils, and optimized MRI pulse sequences. This article examines the factors that limit spatial resolution in MRI, especially the inherently low signal-to-noise ratio of nuclear magnetic resonance (NMR), and explains how these limiting factors can be overcome in principle, by acquiring MRI data at low temperatures and using dynamic nuclear polarization (DNP) to enhance signal amplitudes. Recent efforts directed at micron-scale MRI enabled by low-temperature DNP, culminating in images with 1.7 μm isotropic resolution obtained at 5 K, are reviewed. The article concludes with a discussion of areas in which further developments are likely to lead to further improvements in resolution, eventually to 1.0 μm or better.

几十年来,将磁共振成像(MRI)技术扩展到单微米尺度一直是多个实验室研究的目标。事实证明,即使使用性能良好的测试样本、微线圈和优化的MRI脉冲序列,在300K附近的感应检测MRI中也很难实现优于3.0μm的各向同性空间分辨率。本文研究了限制MRI空间分辨率的因素,特别是核磁共振(NMR)固有的低信噪比,并解释了如何通过在低温下获取MRI数据和使用动态核极化(DNP)来增强信号振幅,原则上克服这些限制因素。综述了最近通过低温DNP实现微米级MRI的努力,最终在5K下获得1.7μm各向同性分辨率的图像。文章最后讨论了进一步发展可能导致分辨率进一步提高的领域,最终达到1.0μm或更好。
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引用次数: 0
Fingerprinting and profiling in metabolomics of biosamples 生物样品代谢组学中的指纹图谱和图谱
IF 6.1 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2023-11-01 DOI: 10.1016/j.pnmrs.2023.10.002
Veronica Ghini , Gaia Meoni , Alessia Vignoli , Francesca Di Cesare , Leonardo Tenori , Paola Turano , Claudio Luchinat

This review focuses on metabolomics from an NMR point of view. It attempts to cover the broad scope of metabolomics and describes the NMR experiments that are most suitable for each sample type. It is addressed not only to NMR specialists, but to all researchers who wish to approach metabolomics with a clear idea of what they wish to achieve but not necessarily with a deep knowledge of NMR. For this reason, some technical parts may seem a bit naïve to the experts. The review starts by describing standard metabolomics procedures, which imply the use of a dedicated 600 MHz instrument and of four properly standardized 1D experiments. Standardization is a must if one wants to directly compare NMR results obtained in different labs. A brief mention is also made of standardized pre-analytical procedures, which are even more essential. Attention is paid to the distinction between fingerprinting and profiling, and the advantages and disadvantages of fingerprinting are clarified. This aspect is often not fully appreciated. Then profiling, and the associated problems of signal assignment and quantitation, are discussed. We also describe less conventional approaches, such as the use of different magnetic fields, the use of signal enhancement techniques to increase sensitivity, and the potential of field-shuttling NMR. A few examples of biomedical applications are also given, again with the focus on NMR techniques that are most suitable to achieve each particular goal, including a description of the most common heteronuclear experiments. Finally, the growing applications of metabolomics to foodstuffs are described.

本文从核磁共振的角度对代谢组学进行了综述。它试图涵盖代谢组学的广泛范围,并描述了最适合每种样品类型的NMR实验。它不仅适用于NMR专家,也适用于所有希望对代谢组学有明确想法但不一定对NMR有深入了解的研究人员。出于这个原因,一些技术部分在专家看来可能有点幼稚。综述从描述标准代谢组学程序开始,这意味着使用专用的600 MHz仪器和四个适当标准化的1D实验。如果想要直接比较在不同实验室获得的NMR结果,标准化是必须的。还简要提到了标准化的预分析程序,这些程序甚至更为重要。注意指纹识别和特征分析之间的区别,并阐明了指纹识别的优点和缺点。这方面往往没有得到充分的重视。然后分析,以及信号分配和定量的相关问题,进行了讨论。我们还描述了不太传统的方法,例如使用不同的磁场,使用信号增强技术来提高灵敏度,以及场穿梭NMR的潜力。还给出了一些生物医学应用的例子,再次重点介绍了最适合实现每个特定目标的NMR技术,包括对最常见的杂核实验的描述。最后,介绍了代谢组学在食品中日益增长的应用。
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引用次数: 1
Metal ions based dynamic nuclear polarization: MI-DNP 基于金属离子的动态核极化:MI-DNP
IF 6.1 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2023-08-22 DOI: 10.1016/j.pnmrs.2023.08.002
Daniel Jardón-Álvarez, Michal Leskes

Over the last two decades magic angle spinning dynamic nuclear polarization (MAS DNP) has revolutionized NMR for materials characterization, tackling its main limitation of intrinsically low sensitivity. Progress in theoretical understanding, instrumentation, and sample formulation expanded the range of materials applications and research questions that can benefit from MAS DNP. Currently the most common approach for hyperpolarization under MAS consists in impregnating the sample of interest with a solution containing nitroxide radicals, which upon microwave irradiation serve as exogenous polarizing agents. On the other hand, in metal ion based (MI)-DNP, inorganic materials are doped with paramagnetic metal centres, which then can be used as endogenous polarizing agents. In this work we give an overview of the electron paramagnetic resonance (EPR) concepts required to characterize the metal ions and discuss the expected changes in the NMR response due to the presence of paramagnetic species. We highlight which properties of the electron spins are beneficial for applications as polarizing agents in DNP and how to recognize them, both from the EPR and NMR data. A theoretical description of the main DNP mechanisms is given, employing a quantum mechanical formalism, and these concepts are used to explain the spin dynamics observed in the DNP experiment. In addition, we highlight the main differences between MI-DNP and the more common approaches in MAS DNP, which use organic radicals as exogenous polarizing source. Finally, we review some applications of metal ions as polarizing agents in general and then focus particularly on research questions in materials science that can benefit from MI-DNP.

在过去的二十年中,魔角自旋动态核极化(MAS DNP)彻底改变了核磁共振材料表征,解决了其固有低灵敏度的主要限制。理论认识、仪器和样品配方的进步扩大了材料应用和研究问题的范围,可以从MAS DNP中受益。目前,最常见的在MAS下进行超极化的方法是用含有氮氧化物自由基的溶液浸渍样品,在微波照射下作为外源极化剂。另一方面,在金属离子基(MI)-DNP中,无机材料被掺杂顺磁性金属中心,然后可以用作内源性极化剂。在这项工作中,我们概述了表征金属离子所需的电子顺磁共振(EPR)概念,并讨论了由于顺磁性物质的存在而导致的核磁共振响应的预期变化。我们强调了电子自旋的哪些性质有利于在DNP中作为极化剂的应用,以及如何从EPR和NMR数据中识别它们。采用量子力学的形式描述了DNP的主要机制,并用这些概念解释了DNP实验中观察到的自旋动力学。此外,我们强调了MI-DNP和MAS DNP中更常见的方法之间的主要区别,后者使用有机自由基作为外源极化源。最后,我们综述了金属离子作为极化剂的一些应用,并重点讨论了金属离子作为极化剂在材料科学中的应用。
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引用次数: 0
An overview of Helium-3 NMR: Recent developments and applications 氦-3核磁共振综述:最近的发展和应用
IF 6.1 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2023-08-01 DOI: 10.1016/j.pnmrs.2023.08.001
Leonid B. Krivdin

The present review is focused on experimental and theoretical methods together with applications of helium NMR in chemistry and biochemistry. It comprises two main sections, the first dealing with standardization and instrumentation for 3He NMR spectroscopy and the second dealing with its practical applications, mainly those in general and organic chemistry with a special emphasis on the rapidly developing and exciting area of fullerenes encapsulating helium atoms. Several general applications of 3He NMR spectroscopy in physical chemistry and biomedicine are also briefly discussed.

综述了氦核磁共振的实验方法和理论方法,以及它在化学和生物化学中的应用。它包括两个主要部分,第一部分涉及3He核磁共振光谱的标准化和仪器仪表,第二部分涉及其实际应用,主要是一般和有机化学中的应用,特别强调快速发展和令人兴奋的富勒烯封装氦原子的领域。并简要讨论了3He核磁共振波谱在物理化学和生物医学中的几种一般应用。
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引用次数: 0
Implementation and applications of shaped pulses in EPR 成形脉冲在EPR中的实现与应用
IF 6.1 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2023-08-01 DOI: 10.1016/j.pnmrs.2023.04.003
Burkhard Endeward, Matthias Bretschneider, Paul Trenkler, Thomas F. Prisner

In this review, we describe the application of shaped pulses for EPR spectroscopy. Pulses generated by fast arbitrary waveform generators are mostly used in the field of EPR spectroscopy for broadband (200 MHz-1 GHz) excitation of paramagnetic species. The implementation and optimization of such broadband pulses in existing EPR spectrometers, often designed and optimized for short rectangular microwave pulses, is demanding. Therefore, a major part of this review will describe in detail the implementation, testing and optimization of shaped pulses in existing EPR spectrometers. Additionally, we review applications using such pulses for broadband inversion of longitudinal magnetization as well as for the creation and manipulation of transverse magnetization in the field of dipolar and hyperfine EPR spectroscopy. They demonstrate the great potential of shaped pulses to improve the performance of pulsed EPR experiments. We give a brief theoretical description of shaped pulses and their limitations, especially for adiabatic pulses, most often used in EPR. We believe that this review can on the one hand be of practical use to EPR groups starting to work with such pulses, and on the other hand give readers an overview of the state of the art of shaped pulse applications in EPR spectroscopy.

本文综述了形状脉冲在EPR光谱中的应用。快速任意波形发生器产生的脉冲主要用于EPR光谱领域的宽带(200 MHz-1 GHz)顺磁物质激励。现有的EPR光谱仪通常是为短矩形微波脉冲设计和优化的,因此对这种宽带脉冲的实现和优化要求很高。因此,本综述的主要部分将详细介绍在现有EPR光谱仪上实现、测试和优化形状脉冲。此外,我们回顾了这些脉冲在纵向磁化的宽带反演以及在偶极和超精细EPR光谱领域中横向磁化的创建和操作的应用。它们证明了形状脉冲在提高脉冲EPR实验性能方面的巨大潜力。我们给出了形状脉冲及其局限性的简要理论描述,特别是绝热脉冲,最常用于EPR。我们相信,这篇综述一方面可以对开始使用这种脉冲的EPR小组有实际用途,另一方面可以让读者对EPR光谱学中成形脉冲应用的现状有一个概述。
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引用次数: 1
Pure shift edited NMR methodologies for the extraction of Homo- and heteronuclear couplings with ultra-high resolution 纯移位编辑核磁共振方法的提取与超高分辨率的同核和异核耦合
IF 6.1 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2023-08-01 DOI: 10.1016/j.pnmrs.2023.02.001
Sandeep Kumar Mishra , N. Suryaprakash

The scalar couplings that result in the splitting of the signals in the NMR spectrum arise due to the interaction of the nuclear spins, whereby the spin polarization is transmitted through chemical bonds. The interaction strengths depend inter alia on the number of consecutive chemical bonds intervening between the two interacting spins and on the molecular conformation. The pairwise interaction of many spins in a molecule resulting in a complex spectrum poses a severe challenge to analyse the spectrum and hence the determination of magnitudes and signs of homo- and heteronuclear couplings. The problem is more severe in the analysis of 1H spectra than the spectra of most of the other nuclei due to the often very small chemical shift dispersion. As a consequence, the straightforward analysis and the accurate extraction of the coupling constants from the 1H spectrum of a complex spin system continues to remain a challenge, and often may be a formidable task. Over the years, the several pure shift-based one‐dimensional and two‐dimensional methodologies have been developed by workers in the field, which provide broadband homonuclear decoupling of proton spectra, removing the complexity but at the cost of the very informative scalar couplings. To circumvent this problem, several one‐dimensional and two‐dimensional NMR experiments have been developed for the determination of homonuclear and heteronuclear couplings (nJHX, where n = 1,2,3) while retaining the high resolution obtained by implementing pure shift strategies. This review attempts to summarize the extensive work reported by a large number of researchers over the years for the accurate determination of homo- and heteronuclear scalar couplings.

导致核磁共振谱中信号分裂的标量耦合是由于核自旋的相互作用引起的,自旋极化是通过化学键传递的。相互作用强度除其他外取决于两个相互作用自旋之间的连续化学键的数目和分子的构象。分子中许多自旋的成对相互作用导致了复杂的光谱,这对分析光谱以及确定同核和异核耦合的大小和标志提出了严峻的挑战。由于化学位移色散往往非常小,在分析1H谱时,这个问题比分析其他大多数原子核谱时更为严重。因此,从复杂自旋系统的1H谱中直接分析和准确提取耦合常数仍然是一个挑战,而且往往是一项艰巨的任务。多年来,该领域的工作者已经开发了几种纯基于位移的一维和二维方法,它们提供了质子谱的宽带同核解耦,消除了复杂性,但代价是非常信息的标量耦合。为了避免这个问题,一些一维和二维核磁共振实验已经被开发出来,用于确定同核和异核耦合(nJHX,其中n = 1,2,3),同时保持通过实施纯移位策略获得的高分辨率。这篇综述试图总结大量研究人员多年来为准确测定同核和异核标量耦合所做的大量工作。
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引用次数: 0
Affinity measurement of strong ligands with NMR spectroscopy: Limitations and ways to overcome them 核磁共振波谱法测定强配体的亲和性:局限性和克服方法
IF 6.1 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2023-07-18 DOI: 10.1016/j.pnmrs.2023.07.001
Claudio Dalvit , Isabel Gmür , Philip Rößler , Alvar D. Gossert

NMR spectroscopy is currently extensively used in binding assays for hit identification, but its use in dissociation constant determination is more limited when compared to other biophysical techniques, in particular for tight binders. Although NMR is quite suitable for measuring the binding strength of weak to medium affinity ligands with dissociation constant KD > 1 μM, it has some limitations in the determination of the binding strength of tight binders (KD < 1 μM). A theoretical analysis of the binding affinity determination of strong ligands using different types of NMR experiments is provided and practical guidelines are given for overcoming the limitations and for the proper set-up of the experiments. Some approaches require reagents with unique properties or highly specialized equipment, while others can be applied quite generally. We describe all approaches in detail, but give higher emphasis to the more general methods, like competition experiments, where we include actual experimental data and discuss the practical aspects.

核磁共振波谱目前广泛应用于结合分析,用于命中鉴定,但与其他生物物理技术相比,它在解离常数测定中的应用更为有限,特别是对于紧密结合物。虽然核磁共振非常适合测量离解常数为KD >的弱至中等亲和配体的结合强度;1 μM,在确定紧密结合剂的结合强度(KD <1μM)。利用不同类型的核磁共振实验对强配体的结合亲和力测定进行了理论分析,并给出了克服这些限制和正确设置实验的实用指南。一些方法需要具有独特性质的试剂或高度专业化的设备,而另一些方法可以相当普遍地应用。我们详细描述了所有方法,但更强调更一般的方法,如竞争实验,我们包括实际的实验数据,并讨论实际方面。
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引用次数: 0
期刊
Progress in Nuclear Magnetic Resonance Spectroscopy
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