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The Anti-ulcer Potential of Weissellacibaria Assisted Biofermented Product of Citrus limetta Waste Peel in Wistar Albino Rats 魏氏栲辅助生物发酵产品对 Wistar 白化大鼠抗溃疡的潜力
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-11-29 DOI: 10.2174/0118722083278152231121173605
Monika Singh, Shreshtha Singh, Dinesh Puri, Shalini K. Sawhney, Nitin Kumar, M. Yasir, Pankaj Nainwal
Citrus limetta (Mosambi) has a high content of flavonoids and exhibits antioxidant activity, which could stimulate the digestive system and be useful for gastroprotective activity. It supports digestion by neutralizing the acidic digestive juices and reducing gastric acidity. This study explored the potential of using waste peel extract from Citrus limetta to prevent ulcers. The study specifically sought to assess the anti-ulcer properties of fermented and non-fermented extracts and compare them. Further, the study looked at the potential benefits of treating or preventing ulcers with Citrus limetta waste peels and whether fermentation affected the efficacy of the treatment. Thirty Wistar albino rats were equally distributed into five different groups. Group 1 received distilled water (20ml/kg/b.w); Group 2 received indomethacin (mg/kg/b.w); Group 3 received Omeprazole (20mg/kg/b.w); Group 4 received aqueous extract of Mosambi peel (400 mg/kg/b.w) and Group 5 received fermented product of extract of Mosambi peel (400 mg/kg/b.w). Findings explored that, compared to non-fermented citrus fruit juice, biofermented had lesser gastric volume (1.58 ± 0.10 ml vs. 1.8 ± 0.14 ml), reduced MDA levels (355.23 ± 100.70 μmol/mg protein vs. 454.49± 155.88 μmol/mg protein), and lower ulcer index (0.49 ± 0.07 vs. 0.72 ± 0.14). The results suggest that the bio-fermented product of Citrus limetta peel has better anti-ulcer potential against peptic ulcer induced by indomethacin in Wistar albino rats compared to non-fermented.
柠檬(Mosambi)含有大量黄酮类化合物,具有抗氧化活性,可刺激消化系统,对胃黏膜有保护作用。它能中和酸性消化液,降低胃酸,从而帮助消化。 本研究探讨了使用柠檬废皮提取物预防溃疡的潜力。研究特别试图评估发酵提取物和非发酵提取物的抗溃疡特性,并对两者进行比较。此外,该研究还探讨了用柠檬废皮治疗或预防溃疡的潜在益处,以及发酵是否会影响治疗效果。 研究人员将 30 只 Wistar 白化大鼠平均分成 5 组。第 1 组接受蒸馏水(20 毫升/千克/体重);第 2 组接受吲哚美辛(毫克/千克/体重);第 3 组接受奥美拉唑(20 毫克/千克/体重);第 4 组接受莫桑比果皮水提取物(400 毫克/千克/体重);第 5 组接受莫桑比果皮提取物发酵产品(400 毫克/千克/体重)。 研究结果表明,与未经发酵的柑橘果汁相比,生物发酵果汁的胃容量较小(1.58 ± 0.10 ml vs. 1.8 ± 0.14 ml),MDA 水平较低(355.23 ± 100.70 μmol/mg 蛋白质 vs. 454.49 ± 155.88 μmol/mg 蛋白质),溃疡指数较低(0.49 ± 0.07 vs. 0.72 ± 0.14)。 结果表明,与未经发酵的产品相比,柠檬皮生物发酵产品对吲哚美辛诱发的 Wistar 白化大鼠消化性溃疡具有更好的抗溃疡潜力。
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引用次数: 0
Bioprospecting of Metabolites from Actinomycetes and their Applications 放线菌代谢物的生物勘探及其应用
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-11-27 DOI: 10.2174/0118722083269904231114154017
Syed Khalida Izhar, Shareen Fatima Rizvi, F. Fatima, Uzma Afaq, Saba Siddiqui
Actinomycetes are present in various terrestrial and aquatic habitats, predominantly in the soil rhizosphere, encompassing marine and freshwater ecosystems. These microorganisms exhibit characteristics that resemble both bacteria and fungi. Numerous actinomycetes exhibit a mycelial existence and undergo significant morphological transformations. These bacteria are widely recognized as biotechnologically significant microorganisms utilized for the production of secondary metabolites. In all, over 45% of all bioactive microbial metabolites are produced by actinomycetes, which are responsible for producing around 10,000 of them. The majority of actinomycetes exhibit substantial saprophytic characteristics in their natural environment, enabling them to effectively decompose a diverse range of plant and animal waste materials during the process of decomposition. Additionally, these organisms possess a sophisticated secondary metabolic system, which enables them to synthesize almost two-thirds of all naturally occurring antibiotics. Moreover, they can create a diverse array of chemical compounds with medical or agricultural applications, including anticancer, antiparasitic, and antibacterial agents. This review aims to provide an overview of the prominent biotechnological domains in which actinobacteria and their metabolites demonstrate noteworthy applicability. The graphical abstract provides a preview of the primary sections covered in this review.
放线菌存在于各种陆地和水生栖息地,主要是土壤根圈,还包括海洋和淡水生态系统。这些微生物具有类似细菌和真菌的特征。许多放线菌以菌丝体形式存在,并会发生重大形态转变。这些细菌被广泛认为是具有重要生物技术意义的微生物,可用于生产次级代谢物。在所有具有生物活性的微生物代谢物中,45% 以上是由放线菌产生的,其中约有 10,000 种是由放线菌产生的。在自然环境中,大多数放线菌都具有很强的吸附性,能在分解过程中有效地分解各种动植物废料。此外,这些生物拥有复杂的次级代谢系统,能够合成几乎三分之二的天然抗生素。此外,它们还能创造出多种具有医疗或农业用途的化合物,包括抗癌、抗寄生虫和抗菌剂。本综述旨在概述放线菌及其代谢物在哪些重要生物技术领域具有显著的应用价值。图文摘要提供了本综述主要内容的预览。
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引用次数: 0
The Inhibitory Effects of the Herbals Secondary Metabolites (7α-acetoxyroyleanone, Curzerene, Incensole, Harmaline, and Cannabidiol) on COVID-19: A Molecular Docking Study 草药次生代谢物(7α-乙酰氧基木犀草酮、莪术烯、茵陈、哈马琳和大麻二酚)对 COVID-19 的抑制作用:分子对接研究
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-11-27 DOI: 10.2174/0118722083246773231108045238
Farshid Zargari, Mehdi Mohammadi, Alireza Nowroozi, Mohammad Hossein Morowvat, E. Nakhaei, Fatemeh Rezagholi
Since the COVID-19 outbreak in early 2020, researchers and studies are continuing to find drugs and/or vaccines against the disease. As shown before, medicinal plants can be very good sources against viruses because of their secondary compounds which may cure diseases and help in survival of patients. In the present study, we test and suggest the inhibitory potential of five herbal based extracts including 7α-acetoxyroyleanone, Curzerene, Incensole, Harmaline, and Cannabidiol with antivirus activity on the models of the significant antiviral targets for COVID-19 like spike glycoprotein, Papain-like protease (PLpro), non-structural protein 15 (NSP15), RNA-dependent RNA polymerase and core protease by molecular docking study. The Salvia rythida root was extracted, dried, and pulverized by a milling machine. The aqueous phase and the dichloromethane phase of the root extractive were separated by two-phase extraction using a separatory funnel. The separation was performed using the column chromatography method. The model of the important antivirus drug target of COVID-19 was obtained from the Protein Data Bank (PDB) and modified. TO study the binding difference between the studied molecules, the docking study was performed. These herbal compounds are extracted from Salvia rhytidea, Curcuma zeodaria, Frankincense, Peganum harmala, and Cannabis herbs, respectively. The binding energies of all compounds on COVID-19 main targets are located in the limited area of 2.22-5.30 kcal/mol. This range of binding energies can support our hypothesis for the presence of the inhibitory effects of the secondary metabolites of mentioned structures on COVID-19. Generally, among the investigated herbal structures, Cannabidiol and 7αacetoxyroyleanone compounds with the highest binding energy have the most inhibitory potential. The least inhibitory effects are related to the Curzerene and Incensole structures by the lowest binding affinity The general arrangement of the basis of the potential barrier of binding energies is in the order below: Cannabidiol > 7α-acetoxyroyleanone > Harmaline> Incensole > Curzerene. Finally, the range of docking scores for investigated herbal compounds on the mentioned targets indicates that the probably inhibitory effects on these targets obey the following order: main protease> RNA-dependent RNA polymerase> PLpro> NSP15> spike glycoprotein.
自 2020 年初爆发 COVID-19 以来,研究人员一直在寻找抗击该疾病的药物和/或疫苗。如前所述,药用植物是抗病毒的良好来源,因为它们的次生化合物可以治疗疾病并帮助患者存活。 在本研究中,我们通过分子对接研究,测试了 7α-acetoxyroyleanone 、Curzerene、Incensole、Harmaline 和 Cannabidiol 等五种草本植物提取物对 COVID-19 的重要抗病毒靶标(如穗糖蛋白、木瓜蛋白酶样蛋白酶 (PLpro)、非结构蛋白 15 (NSP15)、RNA 依赖性 RNA 聚合酶和核心蛋白酶)模型的抑制潜力,并提出了具有抗病毒活性的建议。 将丹参根提取、干燥并用粉碎机粉碎。用分离漏斗将根提取物的水相和二氯甲烷相进行两相萃取分离。分离采用柱层析法。从蛋白质数据库(PDB)中获取并修改了 COVID-19 这一重要抗病毒药物靶点的模型。为了研究研究分子之间的结合差异,进行了对接研究。 这些草药化合物分别提取自丹参、莪术、乳香、五加皮和大麻。所有化合物与 COVID-19 主要靶标的结合能均位于 2.22-5.30 kcal/mol 的有限范围内。这一结合能范围可以支持我们的假设,即上述结构的次生代谢物对 COVID-19 具有抑制作用。一般来说,在所研究的草药结构中,结合能最高的大麻二酚和 7αacetoxyroyleanone 化合物具有最大的抑制潜力。抑制作用最小的是结合亲和力最低的莪术和茵陈结构:大麻二酚 > 7α-acetoxyroyleanone > Harmaline> Incensole > Curzerene。最后,所研究的草药化合物在上述靶标上的对接得分范围表明,对这些靶标的抑制作用可能遵循以下顺序:主蛋白酶> RNA 依赖性 RNA 聚合酶> PLpro> NSP15> 穗糖蛋白。
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引用次数: 0
Patents Selections 专利的选择
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-06-01 DOI: 10.2174/187220831703230306115220
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引用次数: 0
Patents Selections 专利的选择
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-06-01 DOI: 10.2174/187220831702230302164332
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引用次数: 0
Meet the Editorial Board Member 与编辑委员会成员见面
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-06-01 DOI: 10.2174/187220831702230302154730
Norman G. Lewis
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引用次数: 0
Meet the Editorial Board Member 与编辑委员会成员见面
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-03-01 DOI: 10.2174/187220831701221212163054
A. Galdino
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引用次数: 0
Patents Selections 专利的选择
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-03-01 DOI: 10.2174/187220831701221212170557
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引用次数: 0
Proteome Exploration of Human Coronaviruses for Identifying Novel Vaccine Candidate: A Hierarchical Subtractive Genomics and Reverse Vaccinology Approach. 人类冠状病毒蛋白质组学研究用于鉴定新型候选疫苗:层次减法基因组学和反向疫苗学方法。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 DOI: 10.2174/1872208316666220504234800
Hesam Dorosti, Mahboubeh Zarei, Navid Nezafat

Background: The SARS-CoV-2 has been responsible for infecting more than 613,615,658 people in 222 countries by September 11, 2022, of which 6,516,076 have died. COVID-19 was introduced by World Health Organization as a global concern and a pandemic disease due to its prevalence.

Objective: Developing preventive or therapeutic medications against 2019-nCoV is an urgent need, and has been deemed as a high priority among scientific societies; in this regard, the production of effective vaccines is one of the most significant and high-priority requirements. Because of costly and time-consuming process of vaccine design, different immunoinformatics methods have been developed.

Methods: At the beginning of vaccine design, the proteome study is essential. In this investigation, the whole human coronavirus proteome was evaluated using the proteome subtraction strategy. Out of 5945 human coronavirus proteins, five new antigenic proteins were selected by analyzing the hierarchical proteome subtraction, and then their various physicochemical and immunological properties were investigated bioinformatically.

Results: All five protein sequences are antigenic and non-allergenic proteins; moreover, the spike protein group, including spike glycoprotein (E2) (Peplomer protein), spike fragment and spike glycoprotein fragment, showed acceptable stability, which can be used to design new vaccines against human coronaviruses.

Conclusion: The selected peptides and the other proteins introduced in this study (HE, orf7a, SARS_X4 domain-containing protein and protein 8) can be employed as a suitable candidate for developing a novel prophylactic or therapeutic vaccine against human coronaviruses.

背景:截至2022年9月11日,SARS-CoV-2已在222个国家感染超过613,615,658人,其中6,516,076人死亡。COVID-19因其普遍性被世界卫生组织列为全球关注的疾病和大流行疾病。目的:开发针对新型冠状病毒的预防或治疗药物是迫切需要,已被科学界视为高度优先事项;在这方面,生产有效疫苗是最重要和最优先的要求之一。由于疫苗设计成本高、耗时长,人们开发了不同的免疫信息学方法。方法:在疫苗设计之初,蛋白质组学研究是必不可少的。本研究采用蛋白质组减法对整个人冠状病毒蛋白质组进行评估。从5945种人冠状病毒蛋白中,通过分层蛋白质组减法分析筛选出5种新的抗原蛋白,并对其理化和免疫学特性进行生物信息学研究。结果:5个蛋白序列均为抗原性、非致敏性蛋白;此外,包括刺突糖蛋白(E2) (Peplomer蛋白)、刺突片段和刺突糖蛋白片段在内的刺突蛋白组表现出可接受的稳定性,可用于设计新的抗人冠状病毒疫苗。结论:所筛选的多肽和本研究引入的其他蛋白(HE、orf7a、SARS_X4结构域蛋白和蛋白8)可作为开发新型冠状病毒预防或治疗性疫苗的合适候选蛋白。
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引用次数: 1
Basic Guidelines for Bacteriophage Isolation and Characterization. 噬菌体分离和鉴定的基本指南。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 DOI: 10.2174/1872208317666221017094715
Safia Samir

The world is on the cusp of a post-antibiotic period. A century ago, before the advent of antibiotics, bacteriophage therapy was the treatment of choice for bacterial infections. Although bacteriophages have yet to be approved as a treatment in Western medicine, researchers and clinicians have begun to anticipate phage therapy. Bacteriophages are viruses that depend on bacterial cell metabolism to multiply. They offer a promising alternative to the use of antibiotics and an excellent antibacterial option for combating multidrug resistance in bacteria. However, not every phage is suitable for phage therapy. In particular, prophages should not be used because they can lysogenize host cells instead of lysing them. To offer adequate therapeutic options for patients suffering from various infectious diseases, a wide selection of different phages is needed. While there is no evidence of direct toxicity induced by phage particles, it is crucial to study mammalian cell-phage interactions. This requires phage preparations to be free of bacterial cells, toxins and other compounds to avoid skewing host responses. Negative staining of purified viruses and electron microscopy remain the gold standard in the identification of bacteriophages. Interestingly, genomics has greatly changed our understanding of phage biology. Bacteriophage genome sequencing is essential to obtain a complete understanding of the bacteriophages' biology and to obtain confirmation of their lifestyle. Full genetic sequencing of bacteriophage will enable a better understanding of the phage-encoded proteins and biomolecules (especially phage lytic enzymes) involved in the process of bacterial cell lysis and death. Mass spectrometry can be used for the identification of phage structural proteins. The use of lytic phages as biocontrol agents requires the most appropriate and standard methods to ensure application safety. This review pursues recent research and methods in molecular biology for the isolation and characterization of phages to facilitate follow-up and implementation of work for other researchers. Patents related to this topic have been mentioned in the text.

世界正处于后抗生素时代的风口浪尖。一个世纪前,在抗生素出现之前,噬菌体疗法是治疗细菌感染的首选疗法。尽管噬菌体尚未被批准作为一种西医治疗方法,但研究人员和临床医生已经开始期待噬菌体治疗。噬菌体是依靠细菌细胞代谢繁殖的病毒。它们为抗生素的使用提供了一个有希望的替代方案,也是对抗细菌多药耐药性的一个极好的抗菌选择。然而,并不是每个噬菌体都适合噬菌体治疗。特别是,不应该使用噬菌体,因为它们可以溶解宿主细胞而不是溶解它们。为了给患有各种传染病的患者提供适当的治疗选择,需要广泛选择不同的噬菌体。虽然没有证据表明噬菌体颗粒直接诱导毒性,但研究哺乳动物细胞-噬菌体相互作用至关重要。这就要求噬菌体制剂不含细菌细胞、毒素和其他化合物,以避免扭曲宿主的反应。纯化病毒的阴性染色和电子显微镜仍然是鉴定噬菌体的金标准。有趣的是,基因组学极大地改变了我们对噬菌体生物学的理解。噬菌体基因组测序对于全面了解噬菌体的生物学和确定它们的生活方式至关重要。噬菌体的全基因测序将使我们更好地了解噬菌体编码的蛋白质和生物分子(特别是噬菌体裂解酶)参与细菌细胞裂解和死亡的过程。质谱法可用于噬菌体结构蛋白的鉴定。使用噬菌体作为生物防治剂需要最合适和标准的方法来确保应用安全。本文综述了噬菌体分子生物学中分离和表征噬菌体的最新研究和方法,以促进其他研究人员的后续工作和实施。与此主题相关的专利已在文中提到。
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引用次数: 1
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Recent patents on biotechnology
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