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A cellular and molecular perspective on organotypic lymphatic (dys)function 器官型淋巴(天)功能的细胞和分子观点
IF 6 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2025-12-15 DOI: 10.1016/j.semcdb.2025.103665
Sanjay Sunil Kumar , Katharina Uphoff , Sophie Hötte , Verena Prokosch , Stefan Schulte-Merker , Dörte Schulte-Ostermann
The lymphatic vascular system maintains fluid homeostasis, allows uptake of dietary lipids, and serves as a conduit for immune cell trafficking. Functional aspects of the lymphatic vasculature are governed by specific features of lymphatic endothelial cells that line these vessels. Dysfunction of lymphatic endothelial cells can result in various consequences at the organ and at the systemic level including lymphedema formation. In this review, we explore the underlying molecular mechanisms and signaling cascades that drive lymphatic development and vessel formation. We discuss human genetic disorders that lead to primary lymphedema and corresponding in vivo disease models that have helped to expand our molecular understanding pertaining to the signaling cascades governing lymphatic vessel development and maturation, in particular the VEGFC/VEGFR3 and ANG/TIE signaling axes. Furthermore, we highlight recent advancements regarding the anatomy and function of meningeal lymphatics and the Schlemm's canal in the context of development and disease.
淋巴血管系统维持体液平衡,允许摄取膳食脂质,并作为免疫细胞运输的管道。淋巴血管的功能方面是由排列在这些血管上的淋巴内皮细胞的特定特征决定的。淋巴内皮细胞的功能障碍可导致器官和全身水平的各种后果,包括淋巴水肿的形成。在这篇综述中,我们探讨了驱动淋巴发育和血管形成的潜在分子机制和信号级联。我们讨论了导致原发性淋巴水肿的人类遗传疾病和相应的体内疾病模型,这些模型有助于扩大我们对控制淋巴管发育和成熟的信号级联的分子理解,特别是VEGFC/VEGFR3和ANG/TIE信号轴。此外,我们强调在发育和疾病的背景下,关于脑膜淋巴管和施莱姆管的解剖和功能的最新进展。
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引用次数: 0
Recent insights into atrial chamber formation 最近对房室形成的见解。
IF 6 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2025-11-01 DOI: 10.1016/j.semcdb.2025.103664
Marga Albu , David Sedmera , Didier Y.R. Stainier
The sinus node, at the venous end of the heart, automatically generates the electrical impulses that initiate each heart beat and set the heart’s rhythm. From the sinus node, these action potentials are transmitted by specialized structures including initially the atrial inner muscle bundles. Congenital malformations of the atrial wall and the corrective procedures used to treat them frequently disrupt atrial physiology, thereby increasing the risk of arrhythmias. Understanding how the atrial inner muscle bundles develop could therefore facilitate therapeutic strategies. Here, we discuss recent findings on the development of the atrial inner wall and contextualize it with the better understood process of ventricular wall development. Atrial wall architecture varies across species, leading to differences in the patterns of action potential propagation and cardiac contractions. More basal vertebrates such as fish and amphibians (e.g., axolotls) display a webbed-like atrial inner myocardium, whereas mammals develop hierarchically patterned atrial inner muscle structures. This architectural evolution may be associated with the higher cardiovascular requirements of homeothermic organisms. Although the complexity of the atrial inner wall appears to be critical for cardiac function, how it emerges has only recently started being investigated. Oriented action potential propagation correlates with the appearance of the first inner muscle bundles in the chick atrium. Recent studies in zebrafish have shown that atrial cardiomyocytes elongate and intercalate to form multilayered inner structures important for optimal cardiac function. Notably, the cellular and molecular mechanisms behind inner wall emergence differ between the atrium and ventricle. Altogether, these findings lay the foundation for future research into atrial morphogenesis and chamber-specific therapies for congenital heart defects.
位于心脏静脉末端的窦结自动产生电脉冲,触发每次心跳并设定心律。从窦房结开始,这些动作电位通过专门的结构传递,包括最初的心房内肌束。先天性心房壁畸形和用于治疗这些畸形的矫正手术经常扰乱心房生理,从而增加心律失常的风险。因此,了解心房内肌束是如何发育的可以促进治疗策略。在这里,我们讨论心房内壁发育的最新发现,并将其与更好地理解的心室壁发育过程联系起来。心房壁结构因物种而异,导致动作电位传播和心脏收缩模式的差异。更多的基础脊椎动物,如鱼类和两栖动物(如蝾螈)显示网状的心房心肌,而哺乳动物则发展出分层的心房内肌结构。这种结构上的进化可能与恒温生物对心血管的更高要求有关。尽管心房内壁的复杂性似乎对心脏功能至关重要,但它是如何出现的直到最近才开始被研究。定向动作电位的传播与小鸡心房内第一批肌束的出现有关。最近对斑马鱼的研究表明,心房心肌细胞伸长并插入,形成多层的内部结构,对优化心脏功能很重要。值得注意的是,心房和心室内壁形成背后的细胞和分子机制不同。总之,这些发现为进一步研究先天性心脏缺陷的心房形态发生和房室特异性治疗奠定了基础。
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引用次数: 0
Distributed computing inspired by biology 受生物学启发的分布式计算。
IF 6 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2025-11-01 DOI: 10.1016/j.semcdb.2025.103666
Matthias Függer , Thomas Nowak , Kerian Thuillier
Biological systems are mastering the art of composing cells into colonies, tissues, and organisms. This article reviews striking similarities and differences between such biological systems and distributed computing systems, where computational units are composed to form larger systems with the goal of increasing computational power, enhancing system robustness, or overcoming spatial distances.
A problem that recurs in many contexts in distributed systems is obtaining a consistent view of part of the system by its agents. Such problems, known as agreement problems in distributed computing, have been extensively studied across different computational models, varying, for example, in the extent to which the network is stable or dynamic.
Motivated by the importance of agreement problems, we discuss examples ranging from simple to more complex cases, the latter in the context of optimization: agents solving graph optimization problems, searching for optima in arbitrary loss landscapes, and applying gradient-based techniques closely related to widely adopted artificial neural networks.
We then discuss the reverse direction: distributed systems implemented with biological material. In particular, we detail a theoretical distributed computing model and algorithm targeted toward implementation in bacterial populations.
We conclude with an outlook on what we consider the beginning of a promising intersection between distributed computing and biology, highlighting opportunities for both understanding natural systems and engineering novel distributed systems, both biological and in silico.
生物系统正在掌握将细胞组合成菌落、组织和有机体的艺术。本文回顾了这种生物系统和分布式计算系统之间惊人的异同。分布式计算系统中,计算单元被组成以形成更大的系统,其目标是提高计算能力、增强系统健壮性或克服空间距离。在分布式系统的许多上下文中反复出现的一个问题是通过系统的代理获得系统部分的一致视图。这些问题被称为分布式计算中的协议问题,已经在不同的计算模型中进行了广泛的研究,例如,在网络稳定或动态的程度上。由于一致性问题的重要性,我们讨论了从简单到更复杂的例子,后者在优化的背景下:代理解决图优化问题,在任意损失景观中搜索最优,以及应用与广泛采用的人工神经网络密切相关的基于梯度的技术。然后我们讨论相反的方向:用生物材料实现分布式系统。特别是,我们详细介绍了一种针对细菌种群实现的理论分布式计算模型和算法。最后,我们展望了分布式计算和生物学之间有希望的交叉的开始,强调了理解自然系统和工程新型分布式系统的机会,包括生物和计算机。
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引用次数: 0
For special issue: Collective cell migration in vivo 特刊:体内集体细胞迁移。
IF 6 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2025-10-22 DOI: 10.1016/j.semcdb.2025.103663
Mie Wong, Tetsuya Hiraiwa
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引用次数: 0
How to get the most out of your cancer spatial transcriptomics data 如何充分利用你的癌症空间转录组学数据。
IF 6 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2025-10-18 DOI: 10.1016/j.semcdb.2025.103657
David I. Kaplan , Xiang Guo , Sasuni D. Hirimuthugoda , Lachlan Cain , Sirui Weng , David Le , James Comben , Anna S. Trigos
Spatial transcriptomics (ST) has emerged as a powerful tool in cancer research, significantly expanding our capacity to study the complexity of tumour ecosystems. Together with the diversity of ST platforms, a plethora of analysis approaches and tools have been developed with the goal of extracting distinct aspects of biological information contained in the data. From visualizing gene expression in the context of tissue structure and cell morphology, to the exploitation of machine learning and spatial statistics to identify cell neighbourhoods, quantify tumour heterogeneity and map cell-cell signalling networks, there is a current explosion of novel analyses techniques. Unfortunately, this makes it challenging to develop workflows and strategies for data analysis, especially for those new to the field. This review serves to offer a path to cancer researchers who recognise the potential of ST and would like to start their data analysis journey. We cover the main analysis approaches used to address common research questions associated with ST data in cancer, highlighting commonly used tools, as well as discuss emerging analysis techniques that hold the potential to leverage the richness of the data at an unprecedented scale. Finally, we end by highlighting considerations when designing ST projects, from experimental design, to assembling teams and managing the rapid flux of ST technologies. We anticipate this review will be useful resource for researchers to not just seek analysis strategies to answer their current research questions, but also provide inspiration to further take advantage of the wealth of information provided by ST data.
空间转录组学(ST)已成为癌症研究的有力工具,极大地扩展了我们研究肿瘤生态系统复杂性的能力。随着ST平台的多样性,已经开发了大量的分析方法和工具,目的是提取数据中包含的生物信息的不同方面。从可视化组织结构和细胞形态背景下的基因表达,到利用机器学习和空间统计来识别细胞邻域、量化肿瘤异质性和绘制细胞-细胞信号网络,目前出现了大量新的分析技术。不幸的是,这使得开发数据分析的工作流程和策略变得具有挑战性,特别是对那些刚进入该领域的人来说。这篇综述为认识到ST潜力并希望开始数据分析之旅的癌症研究人员提供了一条途径。我们涵盖了用于解决与癌症ST数据相关的常见研究问题的主要分析方法,重点介绍了常用工具,并讨论了新兴的分析技术,这些分析技术有可能以前所未有的规模利用数据的丰富性。最后,我们强调了设计ST项目时的考虑因素,从实验设计到组建团队和管理ST技术的快速变化。我们期望这篇综述不仅能为研究人员寻求分析策略来回答他们当前的研究问题提供有用的资源,而且还能为进一步利用ST数据提供的丰富信息提供灵感。
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引用次数: 0
How growth-induced stresses guide shape changes during animal morphogenesis: Mechanisms and implications 生长诱导的应激如何在动物形态发生过程中引导形状变化:机制和意义。
IF 6 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2025-10-16 DOI: 10.1016/j.semcdb.2025.103661
A. Erlich , S. Harmansa
Morphogenesis, the process by which an organism develops its shape, is orchestrated by a complex interplay of genetic, biochemical, and mechanical factors. While myosin-driven contractility has been widely acknowledged as a critical driver of tissue shaping, emerging evidence suggests that differential growth (i.e. variations in growth rates within or between tissues) plays an equally vital role. Differential growth generates mechanical stresses that drive deformations at both cellular and tissue scales, shaping functional organ morphologies. This review introduces the core principles of growth mechanics in animal tissues and demonstrates how differential growth contributes to the generation of mechanical stresses that shape organs through processes such as folding, bending, and buckling, especially when different tissue layers or extracellular matrices impose external constraints. Furthermore, because cells can sense and respond to stresses, we highlight how integrating theoretical modelling with experimental data deepens our understanding of the feedback loops by which growth-induced stresses arise and mechanically guide functional shapes. Our aim is to engage developmental biologists by highlighting well-established insights from solid mechanics and plant biology on differential growth as a means to generate stress and shape tissue, complementing and extending the traditional focus on contractility.
形态发生是生物体形成其形状的过程,是由遗传、生化和机械因素复杂的相互作用精心安排的。虽然肌球蛋白驱动的收缩力已被广泛认为是组织形成的关键驱动因素,但新出现的证据表明,差异生长(即组织内或组织间生长速率的变化)也起着同样重要的作用。差异生长产生机械应力,驱动细胞和组织尺度的变形,形成功能器官形态。这篇综述介绍了动物组织生长力学的核心原理,并展示了不同的生长如何通过折叠、弯曲和屈曲等过程产生机械应力,特别是当不同的组织层或细胞外基质施加外部约束时。此外,由于细胞可以感知和响应压力,我们强调如何将理论建模与实验数据相结合,加深我们对生长诱导的压力产生和机械引导功能形状的反馈回路的理解。我们的目标是通过强调固体力学和植物生物学关于差异生长的成熟见解来吸引发育生物学家,作为产生压力和塑造组织的手段,补充和扩展传统对收缩性的关注。
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引用次数: 0
Mechanics of force transmission in epithelia: From cell-to-cell propagation to nuclear response 上皮内力传递的机制:从细胞间繁殖到核反应。
IF 6 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2025-10-15 DOI: 10.1016/j.semcdb.2025.103662
Ronan Bouzignac, Magali Suzanne
Mechanical forces play essential roles during morphogenesis, enabling cells to change shape or reorganize to form new structures. Recent questions in the field of mechanobiology focus on how these locally generated forces propagate and the extent of their propagation. This phenomenon can be observed at multiple scales (across tissues, where supracellular actomyosin structures interconnected at cell–cell junctions transmit forces, or within individual cells, where mechanical cues can influence the nucleus). In the first part of this review, we highlight recent advances in our understanding of force propagation along epithelial apical surfaces, including factors that facilitate it, such as tissue curvature and polarity. In the second part, we examine how mechanical forces affect nuclear shape and integrity at the single-cell level, beginning with in vitro studies of nuclear responses to mechanical stress and extending to the less-explored mechanical behavior of nuclei in more complex, integrated model systems.
机械力在形态发生过程中起着至关重要的作用,使细胞改变形状或重组形成新的结构。机械生物学领域最近的问题集中在这些局部产生的力是如何传播的以及它们传播的程度。这种现象可以在多个尺度上观察到(跨组织,在细胞-细胞连接处相互连接的细胞上肌动球蛋白结构传递力,或在单个细胞内,机械信号可以影响细胞核)。在这篇综述的第一部分中,我们重点介绍了我们对上皮细胞顶端表面的力传播的理解的最新进展,包括促进它的因素,如组织曲率和极性。在第二部分中,我们研究了机械力如何在单细胞水平上影响核的形状和完整性,从体外研究核对机械应力的反应开始,并扩展到更复杂的综合模型系统中较少探索的核的机械行为。
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引用次数: 0
Editorial for special issue: Environmental control of oogenesis and ovulatory dynamics 特刊社论:卵子发生和排卵动力学的环境控制。
IF 6 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2025-10-08 DOI: 10.1016/j.semcdb.2025.103659
Chii Jou Chan
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引用次数: 0
Multiciliated cells: Development, functions and disease relevance 多毛细胞:发育、功能和疾病相关性。
IF 6 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2025-10-08 DOI: 10.1016/j.semcdb.2025.103660
Dheeraj Rayamajhi , Sudipto Roy
Multiciliated cells (MCCs) differentiate numerous motile cilia on their apical surface. Beating of these ciliary arrays drive organismal locomotion in fluid medium and function to promote fluid flow over epithelia in various tissues. Besides these mechanical functions, MCC cilia are also sensory organelles, capable of transducing a variety of environmental and intercellular signals. Defective form and functioning of these cells can lead to a variety of clinical manifestations in humans, ranging from severe airway disease to infertility. This review gives an overview of multiple aspects of the biology of MCCs such as their distribution in plants and animals, the gene regulatory networks that organize their specification and differentiation, particularly the latest insights into the fascinating ability of post-mitotic MCC precursor cells to generate hundreds of centrioles for multiciliation. We also discuss how disruption to MCC formation or abnormalities in their ciliary motility cause ciliopathies, affecting multiple organs of the human body, and current status of treatment for these diseases.
多纤毛细胞(Multiciliated cells, MCCs)在其顶端表面分化出许多活动的纤毛。这些纤毛阵列的跳动在流体介质中驱动生物体运动,并在各种组织中促进液体在上皮上的流动。除了这些机械功能外,MCC纤毛也是感觉细胞器,能够转导各种环境和细胞间信号。这些细胞的形态和功能缺陷可导致人类的各种临床表现,从严重的气道疾病到不孕症。本文综述了MCC生物学的多个方面,如它们在植物和动物中的分布,组织它们的规范和分化的基因调控网络,特别是对有丝分裂后MCC前体细胞产生数百个多核中心粒的迷人能力的最新见解。我们还讨论了MCC形成的破坏或其纤毛运动的异常如何导致影响人体多个器官的纤毛病,以及这些疾病的治疗现状。
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引用次数: 0
Start-Shape-Stop: Cell communication mechanisms controlling organ size. 开始-形状-停止:控制器官大小的细胞通讯机制。
IF 6 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2025-10-01 Epub Date: 2025-08-09 DOI: 10.1016/j.semcdb.2025.103641
Lucas Ribas, Rita Mateus

Accurate growth control is critical for the achievement of proportional organs during animal development and repair processes. Either extra or deficient growth rates lead to organ functional impairment. The understanding of how organs acquire, recover, and fine-tune their final size has been a long-lasting biological problem. How do organs measure their current size? This review is centered on this question through the lens of the physical properties governing cell communication mechanisms. In particular, we highlight and discuss new insight into the dynamic connections between several cellular control mechanisms that operate at different timescales to regulate organ growth and morphogenesis.

在动物发育和修复过程中,准确的生长控制是实现器官比例的关键。生长速率过高或不足都会导致器官功能受损。对器官如何获得、恢复和调整其最终大小的理解一直是一个长期存在的生物学问题。器官如何测量它们当前的大小?这篇综述是通过控制细胞通讯机制的物理性质的镜头集中在这个问题上。特别是,我们强调并讨论了在不同时间尺度上运作以调节器官生长和形态发生的几种细胞控制机制之间动态联系的新见解。
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引用次数: 0
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Seminars in cell & developmental biology
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