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Protocol to develop A 3D tumor model for drug testing applications 开发用于药物测试应用的3D肿瘤模型的协议。
IF 2.7 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-01 Epub Date: 2024-12-17 DOI: 10.1016/j.slasd.2024.100206
Prasiddha Guragain, Sunil Singh, Hossein Tavana
Three-dimensional (3D) tumor models provide physiologically relevant tumor environments and have become a major tool in cancer research and drug discovery. This article presents a protocol for creating a 3D organotypic tumor model by embedding a cancer cell spheroid within a collagen matrix containing dispersed fibroblasts. This model offers significant advantages over the conventional monolayer cell culture, monoculture spheroids of cancer cells, and intermixed co-culture of cancer and stromal cells by mimicking the spatial organization and mechanical properties of a solid tumor. Compatible with robotic automation, our protocol significantly enhances reproducibility and scalability of creating a tumor model to study tumor-stromal interactions and test therapeutic compounds
三维(3D)肿瘤模型提供了与生理相关的肿瘤环境,已成为癌症研究和药物发现的主要工具。本文提出了一种通过在含有分散成纤维细胞的胶原基质中嵌入癌细胞球体来创建三维器官型肿瘤模型的方案。该模型通过模拟实体肿瘤的空间组织和力学特性,与传统的单层细胞培养、单一培养的癌细胞球形细胞以及癌细胞和基质细胞混合共培养相比,具有显著的优势。与机器人自动化兼容,我们的方案显着提高了创建肿瘤模型的可重复性和可扩展性,以研究肿瘤-基质相互作用和测试治疗性化合物。
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引用次数: 0
Absolute quantification of Neuron-specific enolase based on surface plasmon resonance 基于表面等离子体共振的神经元特异性烯醇化酶的绝对定量。
IF 2.7 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-01 Epub Date: 2024-12-17 DOI: 10.1016/j.slasd.2024.100205
Cui Lin , Yijie Wang , Tao Peng , Pengpeng Liu , Yuanyuan Liang , Wencheng Kang , Xiaoping Yu , Yang Song , Xuping Shentu
Neuron-specific enolase (NSE) is currently the most reliable biomarker for small cell lung cancer (SCLC), which is important for disease monitoring, clinical evaluation and diagnosis. However, traditional methods suffer from various disadvantages, including instability, complexity, time-consuming operations, and the necessity for standards. In this study, we developed a calibration-free concentration analysis (CFCA) method based on surface plasmon resonance (SPR) technology, to accurately quantify the active concentration of NSE without relying on any standards. Based on the principle of CFCA, the active concentration of NSE can be calculated by observing binding rate variations at two flow rates under partial mass transport limitation and combining it with the known diffusion coefficient of the NSE. Using the method of CFCA, the active concentration of NSE was determined was only 0.48 mg/mL with an intra-day repeatability of 4.75%. The method has the advantages of simplicity, rapidity, realistic analysis and ease of implementation of high-throughput automated detection. Therefore, the method is expected to become the main measurement method for protein active concentration, which will be beneficial for the development of active protein standards.
神经元特异性烯醇化酶(Neuron-specific enolase, NSE)是目前小细胞肺癌(small cell lung cancer, SCLC)最可靠的生物标志物,对疾病监测、临床评价和诊断具有重要意义。然而,传统的方法有各种缺点,包括不稳定、复杂、耗时的操作和需要标准。在本研究中,我们开发了一种基于表面等离子体共振(SPR)技术的无校准浓度分析(CFCA)方法,可以在不依赖任何标准的情况下准确量化NSE的活性浓度。基于CFCA原理,通过观察在部分质量输运限制下两种流速下的结合速率变化,结合已知的NSE扩散系数,可以计算出NSE的活性浓度。CFCA法测定NSE活性浓度仅为0.48 mg/mL,日内重复性为4.75%。该方法具有简单、快速、分析真实、易于实现高通量自动化检测等优点。因此,该方法有望成为蛋白质活性浓度的主要测量方法,有利于活性蛋白质标准的制定。
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引用次数: 0
A novel platform for oral epithelia sheet biofabrication via magnetic 3D bioprinting 磁性3D生物打印口腔上皮片生物制造的新平台。
IF 2.7 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-01 Epub Date: 2024-12-13 DOI: 10.1016/j.slasd.2024.100203
Tien T.T. Truong , Toan V. Phan , Yamin Oo , Oranart Matangkasombut , João N. Ferreira
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引用次数: 0
The history, landscape, and outlook of human cell line authentication and security 人类细胞系鉴定与安全的历史、现状和前景。
IF 2.7 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-01 Epub Date: 2024-11-08 DOI: 10.1016/j.slasd.2024.100194
Elijah Harbut , Yiorgos Makris , Alexander Pertsemlidis , Leonidas Bleris
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引用次数: 0
The development of a novel high-throughput membrane potential assay and a solid-supported membrane (SSM)-based electrophysiological assay to study the pharmacological inhibition of GLUT9/SLC2A9 isoforms in a drug discovery program 开发新型高通量膜电位测定法和基于固体支撑膜(SSM)的电生理学测定法,以研究药物发现计划中对 GLUT9/SLC2A9 同工酶的药理抑制。
IF 2.7 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-01 Epub Date: 2024-11-08 DOI: 10.1016/j.slasd.2024.100193
Antje Pommereau , Francesca Sassone , Alessandro Poli , Marcella De Silvestris , Lia Scarabottolo , Yasmin Zuschlag , Thomas Licher , Felix Bärenz
GLUT9/SLC2A9 is a urate transporter and takes a fundamental role in the maintenance of normal serum urate levels. GLUT9 is the sole transporter of reabsorbed urate from renal epithelial cells to blood, thus making it an ideal pharmacological target for the development of urate-lowering drugs. None of the three currently available assays for studying GLUT9 pharmacological inhibition can support a high throughput drug discovery screening campaign. In this manuscript we present two novel assay technologies which can be used in a drug discovery screening cascade for GLUT9: a GLUT9 membrane potential assay for primary screening; and a solid-supported membrane (SSM)-based supported electrophysiological assay for secondary screening.
GLUT9/SLC2A9 是一种尿酸盐转运体,在维持血清尿酸盐正常水平方面发挥着重要作用。GLUT9 是将肾上皮细胞重吸收的尿酸盐转运到血液中的唯一转运体,因此是开发降尿酸药物的理想药理靶点。目前用于研究 GLUT9 药理抑制的三种检测方法都无法支持高通量药物筛选活动。在本手稿中,我们介绍了两种可用于 GLUT9 药物发现筛选级联的新型检测技术:一种是用于初筛的 GLUT9 膜电位检测法;另一种是用于复筛的基于固体支撑膜 (SSM) 的支撑电生理学检测法。
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引用次数: 0
Magnetic 3D bioprinting of skeletal muscle spheroid for a spheroid-based screening assay 磁性骨骼肌球体三维生物打印,用于基于球体的筛选测定。
IF 2.7 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-01 Epub Date: 2024-10-28 DOI: 10.1016/j.slasd.2024.100190
Chayanit Chaweewannakorn , Khin The Nu Aye , Joao N. Ferreira
Over the past decade, there has been a rapid development in the use of magnetic three dimensional (3D) based cell culture systems. Concerning the skeletal muscle, 3D culture systems can provide biological insights for translational clinical research in the fields of muscle physiology and metabolism. These systems can enhance the cell culture environment by improving spatially-oriented cellular assemblies and morphological features closely mimicking the in vivo tissues/organs, since they promote strong interactions between cells and the extracellular matrix (ECM). However, the time-consuming and complex nature of 3D traditional culture techniques pose a challenge to the widespread adoption of 3D systems. Herein, a bench protocol is presented for creating an innovative, promptly assembled and user-friendly culture platform for the magnetic 3D bioprinting of skeletal muscle spheroids. Our protocol findings revealed consistent morphological outcomes and the functional development of skeletal muscle tissue, as evidenced by the expression of muscle-specific contractile proteins and myotubes and the responsiveness to stimulation with cholinergic neurotransmitters. This proof-of-concept protocol confirmed the future potential for further validation and application of spheroid-based assays in human skeletal muscle research.
在过去十年中,基于三维(3D)的磁性细胞培养系统得到了快速发展。关于骨骼肌,三维培养系统可为肌肉生理学和新陈代谢领域的转化临床研究提供生物学见解。由于三维培养系统能促进细胞与细胞外基质(ECM)之间的强烈相互作用,因此能通过改善空间导向的细胞集结和形态特征来模拟体内组织/器官,从而改善细胞培养环境。然而,三维传统培养技术的耗时和复杂性对三维系统的广泛应用构成了挑战。本文介绍了一种工作台方案,用于创建一个创新、快速组装和用户友好的培养平台,用于骨骼肌球体的磁性三维生物打印。我们的方案研究结果表明,骨骼肌组织的形态学结果和功能发育是一致的,肌肉特异性收缩蛋白和肌管的表达以及对胆碱能神经递质刺激的反应都证明了这一点。这一概念验证方案证实了未来在人体骨骼肌研究中进一步验证和应用基于球蛋白的检测方法的潜力。
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引用次数: 0
Development of a live cell assay for real-time monitoring the interactions between the Hippo pathway components 14-3-3 and TAZ 开发实时监测 Hippo 通路成分 14-3-3 和 TAZ 之间相互作用的活细胞检测方法。
IF 2.7 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-01 Epub Date: 2024-11-05 DOI: 10.1016/j.slasd.2024.100191
Blaž Andlovic , Alexander Wolf , Malgorzata Hiltmann , Bert M. Klebl , Jan Eickhoff , Christian Ottmann
The Hippo pathway plays an important role in organ size control and tissue homeostasis. Dysregulation is involved in many pathologies, including cancer, which has attracted interest in targeting the Hippo pathway. Since the upstream components are bona fide tumor suppressors, it is feasible to target oncogenic downstream targets such as TAZ, a key downstream effector in the Hippo pathway. Its activity is regulated by phosphorylation on multiple sites, with Ser89 playing a critical role in regulation of TAZ activity. Phosphorylation of TAZ at Ser89 promotes binding to 14–3–3 scaffolding proteins, preventing nuclear translocation and abolishing target gene transcription. Here we describe the development of a cell-based assay suitable for high-throughput screening, based on a split NanoLuc luciferase, for monitoring interactions between 14 3–3 and TAZ in living cells. We have validated the assay by screening of a kinase-biased library. The assay can be quickly adapted for higher throughput and thus offers a valuable tool to study new signal inputs involved in regulation of TAZ activity as well as for identification of molecules that modulate the Hippo pathway.
希波通路在器官大小控制和组织稳态中发挥着重要作用。失调涉及包括癌症在内的多种病症,这引起了人们对靶向 Hippo 通路的兴趣。由于上游成分是真正的肿瘤抑制因子,因此以致癌的下游靶点为目标是可行的,例如希波通路的关键下游效应物 TAZ。它的活性受多个位点的磷酸化调控,其中 Ser89 在 TAZ 活性调控中起着关键作用。TAZ在Ser89上的磷酸化会促进与14-3-3支架蛋白的结合,阻止核转位并取消靶基因转录。在此,我们介绍了一种基于细胞的检测方法的开发情况,该方法适用于高通量筛选,它基于分裂的 NanoLuc 荧光素酶,用于监测活细胞中 14-3-3 和 TAZ 之间的相互作用。我们通过筛选激酶偏倚库验证了该检测方法。该检测方法可以快速适应更高的通量,因此为研究参与 TAZ 活性调控的新信号输入以及鉴定调节 Hippo 通路的分子提供了一种有价值的工具。
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引用次数: 0
Bioassay protocol metadata annotation: Proposed standards adoption 生物测定协议元数据注释:建议采用的标准。
IF 2.7 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-01 Epub Date: 2024-10-19 DOI: 10.1016/j.slasd.2024.100188
Rama Balakrishnan , Ellen L. Berg , Christopher C. Butler , Alex M. Clark , Sheryl P. Denker , Isabella Feierberg , Jason Harris , Timothy P. Ikeda , Samantha Jeschonek , Vladimir A. Makarov , Christopher Southan , Dana Vanderwall , Peter Winstanley
We present a standardized metadata template for assays used in pharmaceutical drug discovery research, according to the FAIR principles. We also describe the use of an automated tool for annotating assays from a variety of sources, including PubChem, commercial assay providers, and the peer-reviewed literature, to this metadata template. Adoption of a standardized metadata template will allow drug discovery scientists to better understand and compare the increasing amounts of assay data becoming available, and will facilitate the use of artificial intelligence tools and other computational methods for analysis and prediction. Since bioassays drive advances in biomedical research, improvements in assay metadata can improve productivity in discovery of new therapeutics, platform technologies, and assay methods.
我们根据 FAIR 原则为药物发现研究中使用的检测方法提供了一个标准化元数据模板。我们还介绍了一种自动工具的使用情况,该工具可根据该元数据模板对各种来源的化验结果进行注释,包括 PubChem、商业化验提供商和同行评议文献。采用标准化元数据模板将使药物发现科学家能够更好地理解和比较日益增多的化验数据,并促进人工智能工具和其他计算方法在分析和预测中的应用。由于生物检测推动了生物医学研究的进步,因此改进检测元数据可以提高发现新疗法、平台技术和检测方法的效率。
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引用次数: 0
Rapid-response RNA-fluorescence in situ hybridization (FISH) assay platform for coronavirus antiviral high-throughput screening 用于冠状病毒抗病毒高通量筛选的快速反应 RNA 荧光原位杂交 (FISH) 检测平台
IF 2.7 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-01 Epub Date: 2024-11-04 DOI: 10.1016/j.slasd.2024.100189
Ryan Chan , Christian Shema Mugisha , Vorada Chuenchob , Stephanie A. Moquin , Ujjini H. Manjunatha , Nadine Jarrousse , Vineet D. Menachery , Xuping Xie , Erika L. Flannery , Richard T. Eastman
Over the past 25 years, the global community has faced challenges posed by three distinct outbreaks of coronaviruses including severe acute respiratory syndrome coronavirus (SARS-CoV), Middle East respiratory syndrome coronavirus (MERS-CoV), and severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). The identification of a novel alphacoronavirus canine CoV (CCoV-HuPn2018) in human patients in Malaysia underscores the potential for crossover infections to humans. The threat of the ever-evolving nature of viral infections as well as the lingering health and socioeconomic effects of the recent SARS-CoV-2 pandemic emphasize the urgent need for advanced antiviral drug screening tools that can be quickly implemented to strengthen preparedness and preventive measures against future outbreaks. Here, we present the development and validation of a novel RNA-fluorescence in situ hybridization (FISH) imaging assay as a 384-well, high-throughput rapid response platform for antiviral drug discovery. RNA-FISH is a powerful tool to visualize specific mRNA in cultured cells using a high-content imaging platform. The flexibility of RNA-FISH probe sets allows for the rapid design of viral genome-specific probes, enabling in vitro assay development to test for inhibition of viral replication by either biologic or small molecule inhibitors. Screening of 170 antiviral compounds in concentration-response demonstrates a strong correlation between the RNA-FISH assay and an immunofluorescence assay (IFA) for both human coronaviruses HCoV-OC43 and HCoV-229E. Additionally, we successfully applied this methodology in the context of CCoV strain 1–71, proving rapid development and deployment, opening new avenues for the evaluation of antiviral drugs to potential future emerging threats.
在过去的 25 年中,全球社会面临着严重急性呼吸系统综合征冠状病毒(SARS-CoV)、中东呼吸系统综合征冠状病毒(MERS-CoV)和严重急性呼吸系统综合征冠状病毒 2(SARS-CoV-2)等三种不同冠状病毒爆发所带来的挑战。在马来西亚的人类患者中发现了一种新型α-冠状病毒犬科 CoV(CCoV-HuPn2018),这凸显了人类受到交叉感染的可能性。病毒感染不断演变的威胁,以及最近 SARS-CoV-2 大流行对健康和社会经济造成的持久影响,都强调了对先进抗病毒药物筛选工具的迫切需要,这些工具可以快速实施,以加强对未来疫情爆发的准备和预防措施。在此,我们介绍了一种新型 RNA 荧光原位杂交(FISH)成像检测方法的开发和验证情况,该方法可作为 384 孔高通量快速反应平台用于抗病毒药物的发现。RNA-FISH 是一种功能强大的工具,可利用高含量成像平台观察培养细胞中的特定 mRNA。RNA-FISH 探针组的灵活性使其能够快速设计病毒基因组特异性探针,从而实现体外检测开发,以测试生物或小分子抑制剂对病毒复制的抑制作用。对 170 种抗病毒化合物进行的浓度反应筛选表明,RNA-FISH 检测和免疫荧光检测 (IFA) 对人类冠状病毒 HCoV-OC43 和 HCoV-229E 都有很强的相关性。此外,我们还成功地将该方法应用于 CCoV 1-71 株,证明了该方法的快速开发和部署,为评估抗病毒药物以应对未来潜在的新威胁开辟了新途径。
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引用次数: 0
Corrigendum to “Varieties of Interactions of anti-CD133 Aptamers with Cell Cultures from Patient Glioblastoma” [SLAS Discov. 2024 Nov 16;29(8):100195] “抗cd133适配体与胶质母细胞瘤患者细胞培养物的各种相互作用”的更正[SLAS发现,2024年11月16日;29(8):100195]。
IF 2.7 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-01 Epub Date: 2024-12-06 DOI: 10.1016/j.slasd.2024.100199
Olga Antipova , Valeria Moiseenko , Fatima Dzarieva , Ekaterina Savchenko , Igor Pronin , Galina Pavlova , Alexey Kopylov
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引用次数: 0
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SLAS Discovery
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