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Initial COVID-19 severity influenced by SARS-CoV-2-specific T cells imprints T-cell memory and inversely affects reinfection. 受 SARS-CoV-2 特异性 T 细胞影响的最初 COVID-19 严重程度会形成 T 细胞记忆,并对再感染产生反作用。
IF 39.3 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-05-29 DOI: 10.1038/s41392-024-01867-4
Gang Yang, Jinpeng Cao, Jian Qin, Xinyue Mei, Shidong Deng, Yingjiao Xia, Jun Zhao, Junxiang Wang, Tao Luan, Daxiang Chen, Peiyu Huang, Cheng Chen, Xi Sun, Qi Luo, Jie Su, Yunhui Zhang, Nanshan Zhong, Zhongfang Wang

The immunoprotective components control COVID-19 disease severity, as well as long-term adaptive immunity maintenance and subsequent reinfection risk discrepancies across initial COVID-19 severity, remain unclarified. Here, we longitudinally analyzed SARS-CoV-2-specific immune effectors during the acute infection and convalescent phases of 165 patients with COVID-19 categorized by severity. We found that early and robust SARS-CoV-2-specific CD4+ and CD8+ T cell responses ameliorate disease progression and shortened hospital stay, while delayed and attenuated virus-specific CD8+ T cell responses are prominent severe COVID-19 features. Delayed antiviral antibody generation rather than titer level associates with severe outcomes. Conversely, initial COVID-19 severity imprints the long-term maintenance of SARS-CoV-2-specific adaptive immunity, demonstrating that severe convalescents exhibited more sustained virus-specific antibodies and memory T cell responses compared to mild/moderate counterparts. Moreover, initial COVID-19 severity inversely correlates with SARS-CoV-2 reinfection risk. Overall, our study unravels the complicated interaction between temporal characteristics of virus-specific T cell responses and COVID-19 severity to guide future SARS-CoV-2 wave management.

控制 COVID-19 疾病严重程度的免疫保护成分,以及长期适应性免疫维持和不同 COVID-19 初始严重程度的后续再感染风险差异,仍未得到澄清。在这里,我们纵向分析了按严重程度分类的 165 例 COVID-19 患者在急性感染期和恢复期的 SARS-CoV-2 特异性免疫效应因子。我们发现,早期强健的 SARS-CoV-2 特异性 CD4+ 和 CD8+ T 细胞反应可改善疾病进展并缩短住院时间,而延迟和减弱的病毒特异性 CD8+ T 细胞反应则是 COVID-19 严重程度的突出特征。抗病毒抗体产生的延迟而不是滴度水平与严重后果有关。相反,最初的 COVID-19 严重程度会影响 SARS-CoV-2 特异性适应性免疫的长期维持,这表明与轻度/中度患者相比,重度康复者表现出更持久的病毒特异性抗体和记忆 T 细胞反应。此外,最初的 COVID-19 严重程度与 SARS-CoV-2 再感染风险成反比。总之,我们的研究揭示了病毒特异性 T 细胞反应的时间特征与 COVID-19 严重程度之间复杂的相互作用,为今后的 SARS-CoV-2 波管理提供了指导。
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引用次数: 0
Notch signaling pathway in cancer: from mechanistic insights to targeted therapies. 癌症中的 Notch 信号通路:从机理认识到靶向治疗。
IF 40.8 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-05-27 DOI: 10.1038/s41392-024-01828-x
Qingmiao Shi, Chen Xue, Yifan Zeng, Xin Yuan, Qingfei Chu, Shuwen Jiang, Jinzhi Wang, Yaqi Zhang, Danhua Zhu, Lanjuan Li

Notch signaling, renowned for its role in regulating cell fate, organ development, and tissue homeostasis across metazoans, is highly conserved throughout evolution. The Notch receptor and its ligands are transmembrane proteins containing epidermal growth factor-like repeat sequences, typically necessitating receptor-ligand interaction to initiate classical Notch signaling transduction. Accumulating evidence indicates that the Notch signaling pathway serves as both an oncogenic factor and a tumor suppressor in various cancer types. Dysregulation of this pathway promotes epithelial-mesenchymal transition and angiogenesis in malignancies, closely linked to cancer proliferation, invasion, and metastasis. Furthermore, the Notch signaling pathway contributes to maintaining stem-like properties in cancer cells, thereby enhancing cancer invasiveness. The regulatory role of the Notch signaling pathway in cancer metabolic reprogramming and the tumor microenvironment suggests its pivotal involvement in balancing oncogenic and tumor suppressive effects. Moreover, the Notch signaling pathway is implicated in conferring chemoresistance to tumor cells. Therefore, a comprehensive understanding of these biological processes is crucial for developing innovative therapeutic strategies targeting Notch signaling. This review focuses on the research progress of the Notch signaling pathway in cancers, providing in-depth insights into the potential mechanisms of Notch signaling regulation in the occurrence and progression of cancer. Additionally, the review summarizes pharmaceutical clinical trials targeting Notch signaling for cancer therapy, aiming to offer new insights into therapeutic strategies for human malignancies.

Notch 信号传导因其在调节细胞命运、器官发育和组织稳态方面的作用而闻名,在整个进化过程中高度保守。Notch受体及其配体是含有表皮生长因子样重复序列的跨膜蛋白,通常需要受体与配体相互作用才能启动经典的Notch信号转导。越来越多的证据表明,在各种癌症类型中,Notch 信号通路既是致癌因子,也是肿瘤抑制因子。该通路的失调会促进恶性肿瘤的上皮-间质转化和血管生成,与癌症的增殖、侵袭和转移密切相关。此外,Notch 信号通路还有助于维持癌细胞的干样特性,从而增强癌症的侵袭性。Notch 信号通路在癌症代谢重编程和肿瘤微环境中的调控作用表明,它在平衡致癌作用和抑癌作用方面发挥着关键作用。此外,Notch 信号通路还与肿瘤细胞的化疗抗药性有关。因此,全面了解这些生物学过程对于开发针对 Notch 信号转导的创新治疗策略至关重要。本综述重点关注癌症中 Notch 信号通路的研究进展,深入探讨 Notch 信号在癌症发生和发展过程中的潜在调控机制。此外,综述还总结了针对 Notch 信号转导的癌症治疗药物临床试验,旨在为人类恶性肿瘤的治疗策略提供新的见解。
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引用次数: 0
DEAD-box helicase 17 (DDX17) protects cardiac function by promoting mitochondrial homeostasis in heart failure. DEAD-box helicase 17 (DDX17)通过促进心力衰竭患者线粒体的稳态来保护心脏功能。
IF 39.3 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-05-24 DOI: 10.1038/s41392-024-01831-2
Mingjing Yan, Junpeng Gao, Ming Lan, Que Wang, Yuan Cao, Yuxuan Zheng, Yao Yang, Wenlin Li, Xiaoxue Yu, Xiuqing Huang, Lin Dou, Bing Liu, Junmeng Liu, Hongqiang Cheng, Kunfu Ouyang, Kun Xu, Shenghui Sun, Jin Liu, Weiqing Tang, Xiyue Zhang, Yong Man, Liang Sun, Jianping Cai, Qing He, Fuchou Tang, Jian Li, Tao Shen

DEAD-box helicase 17 (DDX17) is a typical member of the DEAD-box family with transcriptional cofactor activity. Although DDX17 is abundantly expressed in the myocardium, its role in heart is not fully understood. We generated cardiomyocyte-specific Ddx17-knockout mice (Ddx17-cKO), cardiomyocyte-specific Ddx17 transgenic mice (Ddx17-Tg), and various models of cardiomyocyte injury and heart failure (HF). DDX17 is downregulated in the myocardium of mouse models of heart failure and cardiomyocyte injury. Cardiomyocyte-specific knockout of Ddx17 promotes autophagic flux blockage and cardiomyocyte apoptosis, leading to progressive cardiac dysfunction, maladaptive remodeling and progression to heart failure. Restoration of DDX17 expression in cardiomyocytes protects cardiac function under pathological conditions. Further studies showed that DDX17 can bind to the transcriptional repressor B-cell lymphoma 6 (BCL6) and inhibit the expression of dynamin-related protein 1 (DRP1). When DDX17 expression is reduced, transcriptional repression of BCL6 is attenuated, leading to increased DRP1 expression and mitochondrial fission, which in turn leads to impaired mitochondrial homeostasis and heart failure. We also investigated the correlation of DDX17 expression with cardiac function and DRP1 expression in myocardial biopsy samples from patients with heart failure. These findings suggest that DDX17 protects cardiac function by promoting mitochondrial homeostasis through the BCL6-DRP1 pathway in heart failure.

DEAD-box 螺旋酶 17(DDX17)是 DEAD-box 家族的典型成员,具有转录辅助因子活性。虽然 DDX17 在心肌中大量表达,但其在心脏中的作用尚未完全清楚。我们培育了心肌细胞特异性 Ddx17 基因敲除小鼠(Ddx17-cKO)、心肌细胞特异性 Ddx17 转基因小鼠(Ddx17-Tg)以及各种心肌细胞损伤和心力衰竭(HF)模型。DDX17在心力衰竭和心肌细胞损伤小鼠模型的心肌中下调。心肌细胞特异性敲除 Ddx17 会促进自噬通路阻断和心肌细胞凋亡,从而导致渐进性心脏功能障碍、适应性重塑和心力衰竭。恢复心肌细胞中 DDX17 的表达可在病理条件下保护心脏功能。进一步的研究表明,DDX17 可与转录抑制因子 B 细胞淋巴瘤 6(BCL6)结合,抑制动态相关蛋白 1(DRP1)的表达。当 DDX17 表达减少时,BCL6 的转录抑制作用减弱,导致 DRP1 表达增加和线粒体裂变,进而导致线粒体稳态受损和心力衰竭。我们还研究了 DDX17 表达与心功能和心衰患者心肌活检样本中 DRP1 表达的相关性。这些研究结果表明,DDX17 可通过 BCL6-DRP1 通路促进心衰患者的线粒体稳态,从而保护心脏功能。
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引用次数: 0
Development of pharmacological immunoregulatory anti-cancer therapeutics: current mechanistic studies and clinical opportunities. 开发药理免疫调节抗癌疗法:当前的机理研究和临床机遇。
IF 39.3 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-05-22 DOI: 10.1038/s41392-024-01826-z
Nanhao Yin, Xintong Li, Xuanwei Zhang, Shaolong Xue, Yu Cao, Gabriele Niedermann, You Lu, Jianxin Xue

Immunotherapy represented by anti-PD-(L)1 and anti-CTLA-4 inhibitors has revolutionized cancer treatment, but challenges related to resistance and toxicity still remain. Due to the advancement of immuno-oncology, an increasing number of novel immunoregulatory targets and mechanisms are being revealed, with relevant therapies promising to improve clinical immunotherapy in the foreseeable future. Therefore, comprehending the larger picture is important. In this review, we analyze and summarize the current landscape of preclinical and translational mechanistic research, drug development, and clinical trials that brought about next-generation pharmacological immunoregulatory anti-cancer agents and drug candidates beyond classical immune checkpoint inhibitors. Along with further clarification of cancer immunobiology and advances in antibody engineering, agents targeting additional inhibitory immune checkpoints, including LAG-3, TIM-3, TIGIT, CD47, and B7 family members are becoming an important part of cancer immunotherapy research and discovery, as are structurally and functionally optimized novel anti-PD-(L)1 and anti-CTLA-4 agents and agonists of co-stimulatory molecules of T cells. Exemplified by bispecific T cell engagers, newly emerging bi-specific and multi-specific antibodies targeting immunoregulatory molecules can provide considerable clinical benefits. Next-generation agents also include immune epigenetic drugs and cytokine-based therapeutics. Cell therapies, cancer vaccines, and oncolytic viruses are not covered in this review. This comprehensive review might aid in further development and the fastest possible clinical adoption of effective immuno-oncology modalities for the benefit of patients.

以抗PD-(L)1和抗CTLA-4抑制剂为代表的免疫疗法为癌症治疗带来了革命性的变化,但与耐药性和毒性相关的挑战依然存在。随着免疫肿瘤学的发展,越来越多的新型免疫调节靶点和机制被发现,相关疗法有望在可预见的未来改善临床免疫疗法。因此,了解全局非常重要。在这篇综述中,我们分析并总结了目前临床前和转化机制研究、药物开发和临床试验的现状,这些研究带来了经典免疫检查点抑制剂之外的下一代药理免疫调节抗癌剂和候选药物。随着癌症免疫生物学的进一步阐明和抗体工程的进步,靶向其他抑制性免疫检查点(包括 LAG-3、TIM-3、TIGIT、CD47 和 B7 家族成员)的药物正成为癌症免疫疗法研究和发现的重要组成部分,结构和功能优化的新型抗 PD-(L)1 和抗 CTLA-4 药物以及 T 细胞共刺激分子的激动剂也是如此。以双特异性 T 细胞诱导剂为例,新出现的以免疫调节分子为靶点的双特异性和多特异性抗体可为临床带来巨大益处。下一代药物还包括免疫表观遗传药物和基于细胞因子的疗法。本综述不包括细胞疗法、癌症疫苗和溶瘤病毒。本综述有助于进一步开发有效的免疫肿瘤学模式,并使其尽快应用于临床,造福患者。
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引用次数: 0
Tumor biomarkers for diagnosis, prognosis and targeted therapy. 用于诊断、预后和靶向治疗的肿瘤生物标记物。
IF 39.3 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-05-20 DOI: 10.1038/s41392-024-01823-2
Yue Zhou, Lei Tao, Jiahao Qiu, Jing Xu, Xinyu Yang, Yu Zhang, Xinyu Tian, Xinqi Guan, Xiaobo Cen, Yinglan Zhao

Tumor biomarkers, the substances which are produced by tumors or the body's responses to tumors during tumorigenesis and progression, have been demonstrated to possess critical and encouraging value in screening and early diagnosis, prognosis prediction, recurrence detection, and therapeutic efficacy monitoring of cancers. Over the past decades, continuous progress has been made in exploring and discovering novel, sensitive, specific, and accurate tumor biomarkers, which has significantly promoted personalized medicine and improved the outcomes of cancer patients, especially advances in molecular biology technologies developed for the detection of tumor biomarkers. Herein, we summarize the discovery and development of tumor biomarkers, including the history of tumor biomarkers, the conventional and innovative technologies used for biomarker discovery and detection, the classification of tumor biomarkers based on tissue origins, and the application of tumor biomarkers in clinical cancer management. In particular, we highlight the recent advancements in biomarker-based anticancer-targeted therapies which are emerging as breakthroughs and promising cancer therapeutic strategies. We also discuss limitations and challenges that need to be addressed and provide insights and perspectives to turn challenges into opportunities in this field. Collectively, the discovery and application of multiple tumor biomarkers emphasized in this review may provide guidance on improved precision medicine, broaden horizons in future research directions, and expedite the clinical classification of cancer patients according to their molecular biomarkers rather than organs of origin.

肿瘤生物标志物是指在肿瘤发生和发展过程中,由肿瘤或机体对肿瘤的反应所产生的物质,已被证明在癌症的筛查和早期诊断、预后预测、复发检测和疗效监测等方面具有重要和令人鼓舞的价值。几十年来,人们在探索和发现新型、灵敏、特异、准确的肿瘤生物标志物方面不断取得进展,极大地促进了个体化医疗的发展,改善了癌症患者的预后,尤其是为检测肿瘤生物标志物而开发的分子生物学技术的进步。在此,我们总结了肿瘤生物标志物的发现和发展,包括肿瘤生物标志物的历史、用于生物标志物发现和检测的传统和创新技术、基于组织来源的肿瘤生物标志物分类以及肿瘤生物标志物在肿瘤临床管理中的应用。我们特别强调了基于生物标志物的抗癌靶向疗法的最新进展,这些疗法正在成为具有突破性进展和前景的癌症治疗策略。我们还讨论了需要解决的局限性和挑战,并提出了将挑战转化为该领域机遇的见解和观点。总之,本综述所强调的多种肿瘤生物标志物的发现和应用可为改进精准医疗提供指导,拓宽未来研究方向的视野,并加快根据癌症患者的分子生物标志物而非原发器官对其进行临床分类。
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引用次数: 0
Mitochondrial dysfunction: mechanisms and advances in therapy. 线粒体功能障碍:治疗机制与进展。
IF 39.3 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-05-15 DOI: 10.1038/s41392-024-01839-8
Yao Zong, Hao Li, Peng Liao, Long Chen, Yao Pan, Yongqiang Zheng, Changqing Zhang, Delin Liu, Minghao Zheng, Junjie Gao

Mitochondria, with their intricate networks of functions and information processing, are pivotal in both health regulation and disease progression. Particularly, mitochondrial dysfunctions are identified in many common pathologies, including cardiovascular diseases, neurodegeneration, metabolic syndrome, and cancer. However, the multifaceted nature and elusive phenotypic threshold of mitochondrial dysfunction complicate our understanding of their contributions to diseases. Nonetheless, these complexities do not prevent mitochondria from being among the most important therapeutic targets. In recent years, strategies targeting mitochondrial dysfunction have continuously emerged and transitioned to clinical trials. Advanced intervention such as using healthy mitochondria to replenish or replace damaged mitochondria, has shown promise in preclinical trials of various diseases. Mitochondrial components, including mtDNA, mitochondria-located microRNA, and associated proteins can be potential therapeutic agents to augment mitochondrial function in immunometabolic diseases and tissue injuries. Here, we review current knowledge of mitochondrial pathophysiology in concrete examples of common diseases. We also summarize current strategies to treat mitochondrial dysfunction from the perspective of dietary supplements and targeted therapies, as well as the clinical translational situation of related pharmacology agents. Finally, this review discusses the innovations and potential applications of mitochondrial transplantation as an advanced and promising treatment.

线粒体具有错综复杂的功能和信息处理网络,在健康调节和疾病进展中都起着举足轻重的作用。特别是,线粒体功能障碍在心血管疾病、神经变性、代谢综合征和癌症等许多常见病中都被发现。然而,线粒体功能障碍的多面性和难以捉摸的表型阈值使我们对其对疾病的影响的理解变得复杂。然而,这些复杂性并不妨碍线粒体成为最重要的治疗靶点之一。近年来,针对线粒体功能障碍的治疗策略不断涌现并进入临床试验阶段。在各种疾病的临床前试验中,利用健康线粒体补充或替代受损线粒体等先进干预措施已显示出前景。线粒体成分,包括 mtDNA、线粒体定位的 microRNA 和相关蛋白质,可以成为潜在的治疗药物,增强免疫代谢疾病和组织损伤中的线粒体功能。在此,我们以常见疾病的具体实例回顾了线粒体病理生理学的现有知识。我们还从膳食补充剂和靶向疗法的角度总结了目前治疗线粒体功能障碍的策略,以及相关药理制剂的临床转化情况。最后,本综述讨论了线粒体移植作为一种先进和有前景的治疗方法的创新和潜在应用。
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引用次数: 0
2-APQC, a small-molecule activator of Sirtuin-3 (SIRT3), alleviates myocardial hypertrophy and fibrosis by regulating mitochondrial homeostasis. 2-APQC是Sirtuin-3(SIRT3)的一种小分子激活剂,它能通过调节线粒体稳态缓解心肌肥厚和纤维化。
IF 40.8 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-05-15 DOI: 10.1038/s41392-024-01816-1
Fu Peng, Minru Liao, Wenke Jin, Wei Liu, Zixiang Li, Zhichao Fan, Ling Zou, Siwei Chen, Lingjuan Zhu, Qian Zhao, Gu Zhan, Liang Ouyang, Cheng Peng, Bo Han, Jin Zhang, Leilei Fu

Sirtuin 3 (SIRT3) is well known as a conserved nicotinamide adenine dinucleotide+ (NAD+)-dependent deacetylase located in the mitochondria that may regulate oxidative stress, catabolism and ATP production. Accumulating evidence has recently revealed that SIRT3 plays its critical roles in cardiac fibrosis, myocardial fibrosis and even heart failure (HF), through its deacetylation modifications. Accordingly, discovery of SIRT3 activators and elucidating their underlying mechanisms of HF should be urgently needed. Herein, we identified a new small-molecule activator of SIRT3 (named 2-APQC) by the structure-based drug designing strategy. 2-APQC was shown to alleviate isoproterenol (ISO)-induced cardiac hypertrophy and myocardial fibrosis in vitro and in vivo rat models. Importantly, in SIRT3 knockout mice, 2-APQC could not relieve HF, suggesting that 2-APQC is dependent on SIRT3 for its protective role. Mechanically, 2-APQC was found to inhibit the mammalian target of rapamycin (mTOR)-p70 ribosomal protein S6 kinase (p70S6K), c-jun N-terminal kinase (JNK) and transforming growth factor-β (TGF-β)/ small mother against decapentaplegic 3 (Smad3) pathways to improve ISO-induced cardiac hypertrophy and myocardial fibrosis. Based upon RNA-seq analyses, we demonstrated that SIRT3-pyrroline-5-carboxylate reductase 1 (PYCR1) axis was closely assoiated with HF. By activating PYCR1, 2-APQC was shown to enhance mitochondrial proline metabolism, inhibited reactive oxygen species (ROS)-p38 mitogen activated protein kinase (p38MAPK) pathway and thereby protecting against ISO-induced mitochondrialoxidative damage. Moreover, activation of SIRT3 by 2-APQC could facilitate AMP-activated protein kinase (AMPK)-Parkin axis to inhibit ISO-induced necrosis. Together, our results demonstrate that 2-APQC is a targeted SIRT3 activator that alleviates myocardial hypertrophy and fibrosis by regulating mitochondrial homeostasis, which may provide a new clue on exploiting a promising drug candidate for the future HF therapeutics.

众所周知,Sirtuin 3(SIRT3)是一种保守的烟酰胺腺嘌呤二核苷酸+(NAD+)依赖性去乙酰化酶,位于线粒体中,可调节氧化应激、分解代谢和 ATP 生成。最近,越来越多的证据表明,SIRT3 通过去乙酰化修饰在心脏纤维化、心肌纤维化甚至心力衰竭(HF)中发挥着关键作用。因此,迫切需要发现 SIRT3 激活剂并阐明其在心力衰竭中的潜在作用机制。在此,我们通过基于结构的药物设计策略发现了一种新的小分子 SIRT3 激活剂(命名为 2-APQC)。研究表明,2-APQC能缓解异丙肾上腺素(ISO)诱导的体外和体内大鼠模型的心肌肥厚和心肌纤维化。重要的是,在SIRT3基因敲除的小鼠中,2-APQC不能缓解HF,这表明2-APQC的保护作用依赖于SIRT3。研究发现,2-APQC可抑制哺乳动物雷帕霉素靶标(mTOR)-p70核糖体蛋白S6激酶(p70S6K)、c-jun N-末端激酶(JNK)和转化生长因子-β(TGF-β)/小母体抗断头瘫3(Smad3)通路,从而改善ISO诱导的心肌肥厚和心肌纤维化。基于RNA-seq分析,我们证实SIRT3-吡咯啉-5-羧酸还原酶1(PYCR1)轴与HF密切相关。研究表明,通过激活PYCR1,2-APQC可增强线粒体的脯氨酸代谢,抑制活性氧(ROS)-p38丝裂原活化蛋白激酶(p38MAPK)通路,从而抵御ISO诱导的线粒体氧化损伤。此外,2-APQC对SIRT3的激活可促进AMP激活蛋白激酶(AMPK)-Parkin轴抑制ISO诱导的坏死。总之,我们的研究结果表明,2-APQC 是一种靶向 SIRT3 激活剂,它能通过调节线粒体稳态缓解心肌肥厚和纤维化,这可能为开发未来高频治疗的候选药物提供了新的线索。
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引用次数: 0
Structural basis of negative regulation of CRISPR-Cas7-11 by TPR-CHAT. TPR-CHAT 对 CRISPR-Cas7-11 负调控的结构基础。
IF 40.8 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-05-13 DOI: 10.1038/s41392-024-01821-4
Tian Hong, Qinghua Luo, Haiyun Ma, Xin Wang, Xinqiong Li, Chongrong Shen, Jie Pang, Yan Wang, Yuejia Chen, Changbin Zhang, Zhaoming Su, Haohao Dong, Xiaodi Tang

CRISPR‒Cas7-11 is a Type III-E CRISPR-associated nuclease that functions as a potent RNA editing tool. Tetratrico-peptide repeat fused with Cas/HEF1-associated signal transducer (TPR-CHAT) acts as a regulatory protein that interacts with CRISPR RNA (crRNA)-bound Cas7-11 to form a CRISPR-guided caspase complex (Craspase). However, the precise modulation of Cas7-11's nuclease activity by TPR-CHAT to enhance its utility requires further study. Here, we report cryo-electron microscopy (cryo-EM) structures of Desulfonema ishimotonii (Di) Cas7-11-crRNA, complexed with or without the full length or the N-terminus of TPR-CHAT. These structures unveil the molecular features of the Craspase complex. Structural analysis, combined with in vitro nuclease assay and electrophoretic mobility shift assay, reveals that DiTPR-CHAT negatively regulates the activity of DiCas7-11 by preventing target RNA from binding through the N-terminal 65 amino acids of DiTPR-CHAT (DiTPR-CHATNTD). Our work demonstrates that DiTPR-CHATNTD can function as a small unit of DiCas7-11 regulator, potentially enabling safe applications to prevent overcutting and off-target effects of the CRISPR‒Cas7-11 system.

CRISPR-Cas7-11 是一种 III-E 型 CRISPR 相关核酸酶,是一种有效的 RNA 编辑工具。与Cas/HEF1相关信号转导子融合的四重肽重复序列(TPR-CHAT)作为一种调控蛋白,与CRISPR RNA(crRNA)结合的Cas7-11相互作用,形成CRISPR引导的Caspase复合物(Craspase)。然而,如何通过 TPR-CHAT 精确调节 Cas7-11 的核酸酶活性以提高其效用还需要进一步研究。在此,我们报告了Desulfonema ishimotonii(Di)Cas7-11-crRNA与TPR-CHAT全长或N端复合物的低温电子显微镜(cryo-EM)结构。这些结构揭示了 Craspase 复合物的分子特征。结构分析结合体外核酸酶试验和电泳迁移试验发现,DiTPR-CHAT 通过阻止靶 RNA 与 DiTPR-CHAT 的 N 端 65 个氨基酸结合(DiTPR-CHATNTD),从而负向调节 DiCas7-11 的活性。我们的工作表明,DiTPR-CHATNTD 可以作为 DiCas7-11 的一个小调节单元发挥作用,从而有可能实现安全应用,防止 CRISPR-Cas7-11 系统的过度切割和脱靶效应。
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引用次数: 0
Effect of plateletcrit and methylenetetrahydrofolate reductase (MTHFR) C677T genotypes on folic acid efficacy in stroke prevention. 血小板crit和亚甲基四氢叶酸还原酶(MTHFR)C677T基因型对叶酸预防中风疗效的影响。
IF 39.3 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-05-10 DOI: 10.1038/s41392-024-01817-0
Yuncong Shi, Zhengzhipeng Zhang, Binyan Wang, Yu Wang, Xiangyi Kong, Yong Sun, Aimin Li, Yimin Cui, Yan Zhang, Jianping Li, Yong Huo, Hui Huang

Previous studies have shown that low platelet count combined with high plasma total homocysteine (tHcy) increased stroke risk and can be lowered by 73% with folic acid. However, the combined role of other platelet activation parameters and the methylenetetrahydrofolate reductase (MTHFR) C677T genotypes on stroke risk and folic acid treatment benefit remain to be examined. This study aimed to investigate if platelet activation parameters and MTHFR genotypes jointly impact folic acid treatment efficacy in first stroke prevention. Data were derived from the China Stroke Primary Prevention Trial. This study includes a total of 11,185 adult hypertensive patients with relevant platelet activation parameters and MTHFR genotype data. When simultaneously considering both platelet activation parameters (plateletcrit, platelet count, mean platelet volume, platelet distribution width) and MTHFR genotypes, patients with both low plateletcrit (Q1) and the TT genotype had the highest stroke incidence rate (5.6%) in the enalapril group. This subgroup significantly benefited from folic acid treatment, with a 66% reduction in first stroke (HR: 0.34; 95% CI: 0.14-0.82; p = 0.016). Consistently, the subgroup with low plateletcrit (Q1) and the CC/CT genotype also benefited from folic acid treatment (HR: 0.40; 95% CI: 0.23-0.70; p = 0.001). In Chinese hypertensive adults, low plateletcrit can identify those who may greatly benefit from folic acid treatment, in particular, those with the TT genotype, a subpopulation known to have the highest stroke risk.

先前的研究表明,血小板计数低合并血浆总同型半胱氨酸(tHcy)高会增加中风风险,而叶酸可将中风风险降低 73%。然而,其他血小板活化参数和亚甲基四氢叶酸还原酶(MTHFR)C677T 基因型对中风风险和叶酸治疗益处的综合作用仍有待研究。本研究旨在探讨血小板活化参数和 MTHFR 基因型是否会共同影响叶酸治疗在首次脑卒中预防中的疗效。数据来自中国脑卒中一级预防试验。该研究共纳入了 11,185 名具有相关血小板活化参数和 MTHFR 基因型数据的成年高血压患者。如果同时考虑血小板活化参数(血小板crit、血小板计数、血小板平均体积、血小板分布宽度)和 MTHFR 基因型,在依那普利组中,同时具有低血小板crit(Q1)和 TT 基因型的患者中风发病率最高(5.6%)。该亚组明显受益于叶酸治疗,首次中风发生率降低了 66%(HR:0.34;95% CI:0.14-0.82;p = 0.016)。同样,低血小板计数(Q1)和 CC/CT 基因型亚组也从叶酸治疗中获益(HR:0.40;95% CI:0.23-0.70;p = 0.001)。在中国成人高血压患者中,低血小板crit可识别出那些可能从叶酸治疗中获益的人群,尤其是那些具有TT基因型的人群,而TT基因型是已知中风风险最高的亚人群。
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引用次数: 0
A pathological joint-liver axis mediated by matrikine-activated CD4+ T cells. 由雌激素激活的 CD4+ T 细胞介导的病理关节-肝轴。
IF 39.3 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-05-08 DOI: 10.1038/s41392-024-01819-y
Junzhi Yi, Hui Zhang, Fangyuan Bao, Zhichu Chen, Yuliang Zhong, Tianning Ye, Xuri Chen, Jingyi Qian, Mengya Tian, Min Zhu, Zhi Peng, Zongyou Pan, Jianyou Li, Zihao Hu, Weiliang Shen, Jiaqi Xu, Xianzhu Zhang, Youzhi Cai, Mengjie Wu, Hua Liu, Jing Zhou, Hongwei Ouyang

The knee joint has long been considered a closed system. The pathological effects of joint diseases on distant organs have not been investigated. Herein, our clinical data showed that post-traumatic joint damage, combined with joint bleeding (hemarthrosis), exhibits a worse liver function compared with healthy control. With mouse model, hemarthrosis induces both cartilage degeneration and remote liver damage. Next, we found that hemarthrosis induces the upregulation in ratio and differentiation towards Th17 cells of CD4+ T cells in peripheral blood and spleen. Deletion of CD4+ T cells reverses hemarthrosis-induced liver damage. Degeneration of cartilage matrix induced by hemarthrosis upregulates serological type II collagen (COL II), which activates CD4+ T cells. Systemic application of a COL II antibody blocks the activation. Furthermore, bulk RNAseq and single-cell qPCR analysis revealed that the cartilage Akt pathway is inhibited by blood treatment. Intra-articular application of Akt activator blocks the cartilage degeneration and thus protects against the liver impairment in mouse and pig models. Taken together, our study revealed a pathological joint-liver axis mediated by matrikine-activated CD4+ T cells, which refreshes the organ-crosstalk axis and provides a new treatment target for hemarthrosis-related disease. Intra-articular bleeding induces cartilage degradation through down-reulation of cartilage Akt pathway. During this process, the soluble COL II released from the damaged cartilage can activate peripheral CD4+ T cells, differention into Th17 cells and secretion of IL-17, which consequently induces liver impairment. Intra-articular application of sc79 (inhibitor of Akt pathway) can prevent the cartilage damage as well as its peripheral influences.

膝关节一直被认为是一个封闭系统。关节疾病对远处器官的病理影响尚未得到研究。在此,我们的临床数据显示,与健康对照组相比,创伤后关节损伤合并关节出血(血运)会导致肝功能恶化。在小鼠模型中,血肿可诱导软骨退化和远端肝损伤。接着,我们发现肝豆状核变性会诱导外周血和脾脏中 CD4+ T 细胞比例上调并向 Th17 细胞分化。CD4+T细胞的缺失可逆转肝豆状核变性引起的肝损伤。由肉泥病诱发的软骨基质退化会上调血清 II 型胶原蛋白(COL II),从而激活 CD4+ T 细胞。全身应用 COL II 抗体可阻止这种活化。此外,大量 RNAseq 和单细胞 qPCR 分析表明,血液处理抑制了软骨 Akt 通路。在小鼠和猪模型中,关节内应用 Akt 激活剂可阻止软骨退化,从而防止肝功能受损。综上所述,我们的研究揭示了由雌激素激活的CD4+ T细胞介导的病理关节-肝脏轴,它刷新了器官-串联轴,并为肝病相关疾病提供了新的治疗靶点。关节内出血通过软骨 Akt 通路的下调诱导软骨降解。在此过程中,受损软骨释放的可溶性 COL II 可激活外周 CD4+ T 细胞,分化为 Th17 细胞并分泌 IL-17,从而诱发肝功能损害。关节内应用 sc79(Akt 通路抑制剂)可防止软骨损伤及其外周影响。
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引用次数: 0
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Signal Transduction and Targeted Therapy
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