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Single cell whole-genome sequencing of brain cells: age- and cell-type specific mutational profiles. 脑细胞单细胞全基因组测序:年龄和细胞类型特异性突变特征。
IF 40.8 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-09 DOI: 10.1038/s41392-024-01892-3
Melania Capasso, N Ahmad Aziz
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引用次数: 0
Ribosomal modification protein rimK-like family member A activates betaine-homocysteine S-methyltransferase 1 to ameliorate hepatic steatosis 核糖体修饰蛋白 rimK 样家族成员 A 激活甜菜碱-高半胱氨酸 S-甲基转移酶 1 以改善肝脏脂肪变性
IF 39.3 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-08 DOI: 10.1038/s41392-024-01914-0
Han Yan, Wenjun Liu, Rui Xiang, Xin Li, Song Hou, Luzheng Xu, Lin Wang, Dong Zhao, Xingkai Liu, Guoqing Wang, Yujing Chi, Jichun Yang

Nonalcoholic fatty liver disease (NAFLD) is a serious threat to public health, but its underlying mechanism remains poorly understood. In screening important genes using Gene Importance Calculator (GIC) we developed previously, ribosomal modification protein rimK-like family member A (RIMKLA) was predicted as one essential gene but its functions remained largely unknown. The current study determined the roles of RIMKLA in regulating glucose and lipid metabolism. RIMKLA expression was reduced in livers of human and mouse with NAFLD. Hepatic RIMKLA overexpression ameliorated steatosis and hyperglycemia in obese mice. Hepatocyte-specific RIMKLA knockout aggravated high-fat diet (HFD)-induced dysregulated glucose/lipid metabolism in mice. Mechanistically, RIMKLA is a new protein kinase that phosphorylates betaine-homocysteine S-methyltransferase 1 (BHMT1) at threonine 45 (Thr45) site. Upon phosphorylation at Thr45 and activation, BHMT1 eliminated homocysteine (Hcy) to inhibit the activity of transcription factor activator protein 1 (AP1) and its induction on fatty acid synthase (FASn) and cluster of differentiation 36 (CD36) gene transcriptions, concurrently repressing lipid synthesis and uptake in hepatocytes. Thr45 to alanine (T45A) mutation inactivated BHMT1 to abolish RIMKLA’s repression on Hcy level, AP1 activity, FASn/CD36 expressions, and lipid deposition. BHMT1 overexpression rescued the dysregulated lipid metabolism in RIMKLA-deficient hepatocytes. In summary, RIMKLA is a novel protein kinase that phosphorylates BHMT1 at Thr45 to repress lipid synthesis and uptake. Under obese condition, inhibition of RIMKLA impairs BHMT1 activity to promote hepatic lipid deposition.

非酒精性脂肪肝(NAFLD)严重威胁着公众健康,但人们对其潜在机制仍然知之甚少。在使用我们之前开发的基因重要性计算器(GIC)筛选重要基因时,核糖体修饰蛋白 rimK 样家族成员 A(RIMKLA)被预测为一个重要基因,但其功能仍在很大程度上未知。本研究确定了 RIMKLA 在调节葡萄糖和脂质代谢中的作用。在患有非酒精性脂肪肝的人类和小鼠肝脏中,RIMKLA的表达减少。肝脏RIMKLA过表达可改善肥胖小鼠的脂肪变性和高血糖。肝细胞特异性 RIMKLA 基因敲除会加重高脂饮食(HFD)诱导的小鼠糖/脂代谢紊乱。从机理上讲,RIMKLA是一种新的蛋白激酶,能使甜菜碱-高半胱氨酸S-甲基转移酶1(BHMT1)的苏氨酸45(Thr45)位点磷酸化。在 Thr45 处磷酸化并激活后,BHMT1 可消除同型半胱氨酸(Hcy),从而抑制转录因子活化蛋白 1(AP1)的活性及其对脂肪酸合成酶(FASn)和分化簇 36(CD36)基因转录的诱导作用,同时抑制肝细胞中脂质的合成和吸收。Thr45 至丙氨酸(T45A)突变使 BHMT1 失活,从而取消了 RIMKLA 对 Hcy 水平、AP1 活性、FASn/CD36 表达和脂质沉积的抑制作用。BHMT1 的过表达可挽救 RIMKLA 缺陷肝细胞中失调的脂质代谢。总之,RIMKLA 是一种新型蛋白激酶,它能使 BHMT1 在 Thr45 处磷酸化,从而抑制脂质的合成和吸收。在肥胖条件下,抑制 RIMKLA 会损害 BHMT1 的活性,从而促进肝脏脂质沉积。
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引用次数: 0
Cell-cell communication: new insights and clinical implications. 细胞-细胞通讯:新见解和临床意义。
IF 40.8 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-07 DOI: 10.1038/s41392-024-01888-z
Jimeng Su, Ying Song, Zhipeng Zhu, Xinyue Huang, Jibiao Fan, Jie Qiao, Fengbiao Mao

Multicellular organisms are composed of diverse cell types that must coordinate their behaviors through communication. Cell-cell communication (CCC) is essential for growth, development, differentiation, tissue and organ formation, maintenance, and physiological regulation. Cells communicate through direct contact or at a distance using ligand-receptor interactions. So cellular communication encompasses two essential processes: cell signal conduction for generation and intercellular transmission of signals, and cell signal transduction for reception and procession of signals. Deciphering intercellular communication networks is critical for understanding cell differentiation, development, and metabolism. First, we comprehensively review the historical milestones in CCC studies, followed by a detailed description of the mechanisms of signal molecule transmission and the importance of the main signaling pathways they mediate in maintaining biological functions. Then we systematically introduce a series of human diseases caused by abnormalities in cell communication and their progress in clinical applications. Finally, we summarize various methods for monitoring cell interactions, including cell imaging, proximity-based chemical labeling, mechanical force analysis, downstream analysis strategies, and single-cell technologies. These methods aim to illustrate how biological functions depend on these interactions and the complexity of their regulatory signaling pathways to regulate crucial physiological processes, including tissue homeostasis, cell development, and immune responses in diseases. In addition, this review enhances our understanding of the biological processes that occur after cell-cell binding, highlighting its application in discovering new therapeutic targets and biomarkers related to precision medicine. This collective understanding provides a foundation for developing new targeted drugs and personalized treatments.

多细胞生物体由不同类型的细胞组成,它们必须通过交流来协调自己的行为。细胞-细胞通讯(CCC)对于生长、发育、分化、组织和器官的形成、维持和生理调节至关重要。细胞通过直接接触或配体-受体相互作用进行远距离交流。因此,细胞通讯包括两个基本过程:用于信号产生和细胞间传输的细胞信号传导,以及用于信号接收和处理的细胞信号转导。破译细胞间通讯网络对于理解细胞分化、发育和新陈代谢至关重要。首先,我们全面回顾了 CCC 研究的历史里程碑,然后详细介绍了信号分子的传递机制及其介导的主要信号通路在维持生物功能方面的重要性。然后,我们系统地介绍了一系列由细胞通讯异常引起的人类疾病及其临床应用进展。最后,我们总结了监测细胞相互作用的各种方法,包括细胞成像、基于邻近性的化学标记、机械力分析、下游分析策略和单细胞技术。这些方法旨在说明生物功能如何依赖这些相互作用及其调控信号通路的复杂性来调节关键的生理过程,包括组织稳态、细胞发育和疾病中的免疫反应。此外,这篇综述加深了我们对细胞-细胞结合后发生的生物过程的理解,突出了其在发现与精准医疗相关的新治疗靶点和生物标记物方面的应用。这种共同的理解为开发新的靶向药物和个性化治疗奠定了基础。
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引用次数: 0
Breaking barriers: noncanonical inflammasome executes blood–brain barrier disruption 打破障碍:非典型炎性体破坏血脑屏障
IF 39.3 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-07 DOI: 10.1038/s41392-024-01921-1
Martin Dichgans, Jonas J. Neher, Yaw Asare
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引用次数: 0
Targeting Lactobacillus johnsonii to reverse chronic kidney disease. 针对约翰逊乳杆菌逆转慢性肾病。
IF 40.8 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-05 DOI: 10.1038/s41392-024-01913-1
Hua Miao, Fei Liu, Yan-Ni Wang, Xiao-Yong Yu, Shougang Zhuang, Yan Guo, Nosratola D Vaziri, Shi-Xing Ma, Wei Su, You-Quan Shang, Ming Gao, Jin-Hua Zhang, Li Zhang, Ying-Yong Zhao, Gang Cao

Accumulated evidence suggested that gut microbial dysbiosis interplayed with progressive chronic kidney disease (CKD). However, no available therapy is effective in suppressing progressive CKD. Here, using microbiomics in 480 participants including healthy controls and patients with stage 1-5 CKD, we identified an elongation taxonomic chain Bacilli-Lactobacillales-Lactobacillaceae-Lactobacillus-Lactobacillus johnsonii correlated with patients with CKD progression, whose abundance strongly correlated with clinical kidney markers. L. johnsonii abundance reduced with progressive CKD in rats with adenine-induced CKD. L. johnsonii supplementation ameliorated kidney lesion. Serum indole-3-aldehyde (IAld), whose level strongly negatively correlated with creatinine level in CKD rats, decreased in serum of rats induced using unilateral ureteral obstruction (UUO) and 5/6 nephrectomy (NX) as well as late CKD patients. Treatment with IAld dampened kidney lesion through suppressing aryl hydrocarbon receptor (AHR) signal in rats with CKD or UUO, and in cultured 1-hydroxypyrene-induced HK-2 cells. Renoprotective effect of IAld was partially diminished in AHR deficiency mice and HK-2 cells. Our further data showed that treatment with L. johnsonii attenuated kidney lesion by suppressing AHR signal via increasing serum IAld level. Taken together, targeting L. johnsonii might reverse patients with CKD. This study provides a deeper understanding of how microbial-produced tryptophan metabolism affects host disease and discovers potential pathways for prophylactic and therapeutic treatments for CKD patients.

累积的证据表明,肠道微生物菌群失调与慢性肾脏病(CKD)的进展相互影响。然而,目前还没有一种疗法能有效抑制慢性肾脏病的进展。在此,我们利用微生物组学研究了包括健康对照组和 1-5 期 CKD 患者在内的 480 名参与者,发现了与 CKD 进展期患者相关的拉长分类链杆菌-乳杆菌科-乳杆菌-约翰逊乳杆菌,其丰度与临床肾脏指标密切相关。在腺嘌呤诱导的慢性肾功能衰竭大鼠中,随着慢性肾功能衰竭的进展,约翰逊酵母菌的丰度降低。补充约翰逊酵母能改善肾脏病变。在单侧输尿管梗阻(UUO)和5/6肾切除术(NX)诱导的大鼠以及晚期CKD患者的血清中,吲哚-3-甲醛(IAld)的水平与CKD大鼠的肌酐水平呈强烈的负相关。通过抑制芳基烃受体(AHR)信号,IAld 可减轻 CKD 大鼠或 UUO 大鼠以及 1-羟基芘诱导的 HK-2 细胞的肾脏损伤。在 AHR 缺乏的小鼠和 HK-2 细胞中,IAld 的肾保护作用部分减弱。我们的进一步数据显示,用强生枸杞治疗可通过提高血清IAld水平抑制AHR信号,从而减轻肾脏病变。综上所述,针对约翰逊鹅膏菌的治疗可能会逆转慢性肾脏病患者的病情。这项研究加深了人们对微生物产生的色氨酸代谢如何影响宿主疾病的理解,并发现了预防和治疗慢性肾脏病患者的潜在途径。
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引用次数: 0
Glycosylation: mechanisms, biological functions and clinical implications. 糖基化:机制、生物功能和临床意义。
IF 40.8 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-05 DOI: 10.1038/s41392-024-01886-1
Mengyuan He, Xiangxiang Zhou, Xin Wang

Protein post-translational modification (PTM) is a covalent process that occurs in proteins during or after translation through the addition or removal of one or more functional groups, and has a profound effect on protein function. Glycosylation is one of the most common PTMs, in which polysaccharides are transferred to specific amino acid residues in proteins by glycosyltransferases. A growing body of evidence suggests that glycosylation is essential for the unfolding of various functional activities in organisms, such as playing a key role in the regulation of protein function, cell adhesion and immune escape. Aberrant glycosylation is also closely associated with the development of various diseases. Abnormal glycosylation patterns are closely linked to the emergence of various health conditions, including cancer, inflammation, autoimmune disorders, and several other diseases. However, the underlying composition and structure of the glycosylated residues have not been determined. It is imperative to fully understand the internal structure and differential expression of glycosylation, and to incorporate advanced detection technologies to keep the knowledge advancing. Investigations on the clinical applications of glycosylation focused on sensitive and promising biomarkers, development of more effective small molecule targeted drugs and emerging vaccines. These studies provide a new area for novel therapeutic strategies based on glycosylation.

蛋白质翻译后修饰(PTM)是蛋白质在翻译过程中或翻译后通过添加或去除一个或多个功能基团而发生的共价过程,对蛋白质功能有深远影响。糖基化是最常见的 PTM 之一,通过糖基转移酶将多糖转移到蛋白质中特定的氨基酸残基上。越来越多的证据表明,糖基化对生物体内各种功能活动的展开至关重要,如在调节蛋白质功能、细胞粘附和免疫逃逸中发挥关键作用。异常的糖基化也与各种疾病的发生密切相关。异常糖基化模式与各种健康状况的出现密切相关,包括癌症、炎症、自身免疫性疾病和其他一些疾病。然而,糖基化残基的基本组成和结构尚未确定。当务之急是充分了解糖基化的内部结构和差异表达,并采用先进的检测技术,以不断推进知识的发展。糖基化临床应用研究的重点是敏感而有前景的生物标记物、开发更有效的小分子靶向药物和新兴疫苗。这些研究为基于糖基化的新型治疗策略提供了新的领域。
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引用次数: 0
Revealing the crucial roles of suppressive immune microenvironment in cardiac myxoma progression. 揭示抑制性免疫微环境在心肌瘤进展中的关键作用。
IF 40.8 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-02 DOI: 10.1038/s41392-024-01912-2
Zedong Jiang, Qianlong Kang, Hong Qian, Zhijie Xu, Huan Tong, Jiaqing Yang, Li Li, Renwei Li, Guangqi Li, Fei Chen, Nan Lin, Yunuo Zhao, Huashan Shi, Juan Huang, Xuelei Ma

Cardiac myxoma is a commonly encountered tumor within the heart that has the potential to be life-threatening. However, the cellular composition of this condition is still not well understood. To fill this gap, we analyzed 75,641 cells from cardiac myxoma tissues based on single-cell sequencing. We defined a population of myxoma cells, which exhibited a resemblance to fibroblasts, yet they were distinguished by an increased expression of phosphodiesterases and genes associated with cell proliferation, differentiation, and adhesion. The clinical relevance of the cell populations indicated a higher proportion of myxoma cells and M2-like macrophage infiltration, along with their enhanced spatial interaction, were found to significantly contribute to the occurrence of embolism. The immune cells surrounding the myxoma exhibit inhibitory characteristics, with impaired function of T cells characterized by the expression of GZMK and TOX, along with a substantial infiltration of tumor-promoting macrophages expressed growth factors such as PDGFC. Furthermore, in vitro co-culture experiments showed that macrophages promoted the growth of myxoma cells significantly. In summary, this study presents a comprehensive single-cell atlas of cardiac myxoma, highlighting the heterogeneity of myxoma cells and their collaborative impact on immune cells. These findings shed light on the complex pathobiology of cardiac myxoma and present potential targets for intervention.

心脏肌瘤是一种常见的心脏肿瘤,有可能危及生命。然而,人们对这种疾病的细胞组成仍不甚了解。为了填补这一空白,我们通过单细胞测序分析了心脏肌瘤组织中的 75,641 个细胞。我们确定了心肌肌瘤细胞群,它们与成纤维细胞相似,但因磷酸二酯酶以及与细胞增殖、分化和粘附相关的基因表达增多而与成纤维细胞区分开来。细胞群的临床相关性表明,肌瘤细胞和 M2 样巨噬细胞浸润的比例较高,而且它们的空间相互作用增强,这些都是导致栓塞发生的重要原因。肌瘤周围的免疫细胞表现出抑制性特征,T 细胞的功能受损,表现为 GZMK 和 TOX 的表达,以及大量表达生长因子(如 PDGFC)的促瘤巨噬细胞的浸润。此外,体外共培养实验表明,巨噬细胞能显著促进肌瘤细胞的生长。总之,本研究提出了一个全面的心脏肌瘤单细胞图谱,强调了肌瘤细胞的异质性及其对免疫细胞的协同影响。这些发现揭示了心肌肌瘤复杂的病理生物学,并提出了潜在的干预目标。
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引用次数: 0
Mechanism insights and therapeutic intervention of tumor metastasis: latest developments and perspectives. 肿瘤转移的机理认识和治疗干预:最新进展和前景。
IF 40.8 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-02 DOI: 10.1038/s41392-024-01885-2
Xiaoli Shi, Xinyi Wang, Wentao Yao, Dongmin Shi, Xihuan Shao, Zhengqing Lu, Yue Chai, Jinhua Song, Weiwei Tang, Xuehao Wang

Metastasis remains a pivotal characteristic of cancer and is the primary contributor to cancer-associated mortality. Despite its significance, the mechanisms governing metastasis are not fully elucidated. Contemporary findings in the domain of cancer biology have shed light on the molecular aspects of this intricate process. Tumor cells undergoing invasion engage with other cellular entities and proteins en route to their destination. Insights into these engagements have enhanced our comprehension of the principles directing the movement and adaptability of metastatic cells. The tumor microenvironment plays a pivotal role in facilitating the invasion and proliferation of cancer cells by enabling tumor cells to navigate through stromal barriers. Such attributes are influenced by genetic and epigenetic changes occurring in the tumor cells and their surrounding milieu. A profound understanding of the metastatic process's biological mechanisms is indispensable for devising efficacious therapeutic strategies. This review delves into recent developments concerning metastasis-associated genes, important signaling pathways, tumor microenvironment, metabolic processes, peripheral immunity, and mechanical forces and cancer metastasis. In addition, we combine recent advances with a particular emphasis on the prospect of developing effective interventions including the most popular cancer immunotherapies and nanotechnology to combat metastasis. We have also identified the limitations of current research on tumor metastasis, encompassing drug resistance, restricted animal models, inadequate biomarkers and early detection methods, as well as heterogeneity among others. It is anticipated that this comprehensive review will significantly contribute to the advancement of cancer metastasis research.

转移仍然是癌症的一个关键特征,也是导致癌症相关死亡率的主要因素。尽管转移具有重要意义,但其机制尚未完全阐明。癌症生物学领域的最新研究成果揭示了这一复杂过程的分子方面。发生入侵的肿瘤细胞在前往目的地的途中会与其他细胞实体和蛋白质发生接触。对这些接触的深入了解加深了我们对指导转移细胞运动和适应性的原理的理解。肿瘤微环境使肿瘤细胞能够穿过基质屏障,从而在促进癌细胞入侵和增殖方面发挥着关键作用。这种特性受到肿瘤细胞及其周围环境中发生的遗传和表观遗传变化的影响。深刻理解转移过程的生物学机制对于制定有效的治疗策略不可或缺。本综述深入探讨了转移相关基因、重要信号通路、肿瘤微环境、代谢过程、外周免疫以及机械力与癌症转移等方面的最新进展。此外,我们结合最新进展,特别强调了开发有效干预措施的前景,包括最流行的癌症免疫疗法和纳米技术来对抗转移。我们还指出了当前肿瘤转移研究的局限性,包括耐药性、受限的动物模型、生物标志物和早期检测方法不足以及异质性等。预计这篇全面的综述将极大地推动癌症转移研究的发展。
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引用次数: 0
Microglial complex I activity: a crucial factor for smoldering inflammation in the central nervous system. 小神经胶质细胞复合体 I 的活性:中枢神经系统炎症潜伏的关键因素。
IF 40.8 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-07-31 DOI: 10.1038/s41392-024-01894-1
Jana K Sonner, Christina Mayer, Manuel A Friese
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引用次数: 0
Adhesion G protein-coupled receptor latrophilin 1 (ADGRL1): a novel regulator of glucose and energy homeostasis. 粘附 G 蛋白偶联受体 latrophilin 1 (ADGRL1):葡萄糖和能量平衡的新型调节器。
IF 40.8 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-07-30 DOI: 10.1038/s41392-024-01925-x
Kavaljit H Chhabra
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引用次数: 0
期刊
Signal Transduction and Targeted Therapy
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