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CRISPR/Cas12a ribonucleoprotein mediated editing of tryptophan 2,3-dioxygenase of Spodoptera frugiperda. CRISPR/Cas12a核糖核蛋白介导的弗氏蝶类色氨酸 2,3-二氧化酶编辑。
IF 2.7 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-08-29 DOI: 10.1007/s11248-024-00406-9
Dhawane Yogi, Karuppannasamy Ashok, Cholenahalli Narayanappa Anu, Thalooru Shashikala, Chalapathy Pradeep, Chikmagalur Nagaraja Bhargava, Madhusoodanan Sujatha Parvathy, M N Jithesh, Maligeppagol Manamohan, Girish Kumar Jha, Ramasamy Asokan

In insect genome editing CRISPR/Cas9 is predominantly employed, while the potential of several classes of Cas enzymes such as Cas12a largely remain untested. As opposed to Cas9 which requires a GC-rich protospacer adjacent motif (PAM), Cas12a requires a T-rich PAM and causes staggered cleavage in the target DNA, opening possibilities for multiplexing. In this regard, the utility of Cas12a has been shown in only a few insect species such as fruit flies and the silkworm, but not in non-model insects such as the fall armyworm, Spodoptera frugiperda, a globally important invasive pest that defies most of the current management methods. In this regard, a more recent genetic biocontrol method known as the precision-guided sterile insect technique (pgSIT) has shown successful implementation in Drosophila melanogaster, with certain thematic adaptations required for application in agricultural pests. However, before the development of a controllable gene drive for a non-model species, it is important to validate the activity of Cas12a in that species. In the current study we have, for the first time, demonstrated the potential of Cas12a by editing an eye color gene, tryptophan 2,3-dioxygenase (TO) of S. frugiperda by microinjecting ribonucleoprotein complex into pre-blastoderm (G0) eggs. Analysis of G0 mutants revealed that all five mutants (two male and three female) exhibited distinct edits consisting of both deletion and insertion events. All five edits were further validated through in silico modeling to understand the changes at the protein level and further corroborate with the range of eye-color phenotypes observed in the present study.

昆虫基因组编辑主要使用 CRISPR/Cas9,而 Cas12a 等几类 Cas 酶的潜力在很大程度上仍未得到检验。Cas9 需要富含 GC 的原间隔邻接基序(PAM),而 Cas12a 则需要富含 T 的 PAM,并且会导致目标 DNA 交错裂解,从而为多重编辑提供了可能性。在这方面,Cas12a 只在果蝇和家蚕等少数昆虫物种中显示出其效用,但在非模式昆虫中却没有显示出其效用,如秋季军虫(Spodoptera frugiperda)。在这方面,一种被称为精确制导昆虫不育技术(pgSIT)的最新遗传生物控制方法已在黑腹果蝇中成功应用,并在农业害虫中应用时需要进行某些主题调整。然而,在为非模式物种开发可控基因驱动之前,验证 Cas12a 在该物种中的活性非常重要。在目前的研究中,我们通过将核糖核蛋白复合物显微注射到前胚胎期(G0)的卵中,编辑了蛙鳉的眼色基因--色氨酸 2,3-二氧合酶(TO),首次证明了 Cas12a 的潜力。对 G0 突变体的分析表明,所有五个突变体(两个雄性突变体和三个雌性突变体)都表现出了由缺失和插入事件组成的独特编辑。本研究通过硅学建模进一步验证了所有五种编辑,以了解蛋白质水平的变化,并进一步证实了本研究中观察到的一系列眼色表型。
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引用次数: 0
Long-term (10-year) monitoring of transposon-mediated transgenic cattle. 对转座子介导的转基因牛进行长期(10 年)监测。
IF 2.7 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-08-28 DOI: 10.1007/s11248-024-00401-0
Soo-Young Yum, Bae Young Choi, Gyeong-Min Gim, Kyeong-Hyeon Eom, Seong-Beom Lee, Daehyun Kim, Euntaek Lim, Do-Yoon Kim, Seong-Eun Heo, Donghwan Shim, Goo Jang

The production of transgenic animals using non-viral methods has raised questions regarding their long-term health and genomic stability. In this study, we evaluated these aspects in transgenic cattle over ten years, using transposon-mediated gene transfer. Our longitudinal analysis included a comprehensive health assessment and whole-genome DNA resequencing. We found no significant alterations in physiological parameters or health complications in transposon-mediated transgenic cattle that exceeded 10 years of age. Genomic analysis revealed that the rates of somatic mutations and copy number variations in transgenic cattle were comparable to those in non-transgenic cattle. Furthermore, structural variants were infrequent, suggesting that transposon-mediated gene insertion did not compromise genomic integrity. These findings highlight the viability of transposon systems for generating transgenic livestock, potentially expanding their applications in agriculture and biotechnology. This study contributes significantly to our understanding of the long-term implications of transgenesis in large animals and supports the safety and stability of this method.

使用非病毒方法生产转基因动物引发了有关其长期健康和基因组稳定性的问题。在这项研究中,我们利用转座子介导的基因转移技术,对转基因牛十年来的这些方面进行了评估。我们的纵向分析包括全面的健康评估和全基因组 DNA 重测序。我们发现,转座子介导的转基因牛在超过 10 岁后,生理参数或健康并发症没有发生明显变化。基因组分析表明,转基因牛的体细胞突变率和拷贝数变异率与非转基因牛相当。此外,结构变异也不常见,这表明转座子介导的基因插入不会损害基因组的完整性。这些发现凸显了转座子系统在产生转基因家畜方面的可行性,有可能扩大其在农业和生物技术领域的应用。这项研究大大有助于我们了解转基因对大型动物的长期影响,并支持这种方法的安全性和稳定性。
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引用次数: 0
Mosquito pollination of plants: an overview of their role and an assessment of the possible contribution of disease vectors. 蚊子为植物授粉:概述其作用并评估病媒的可能贡献。
IF 2.7 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-08-22 DOI: 10.1007/s11248-024-00394-w
Woodbridge A Foster

Mosquitoes visit flowers to obtain sugar or other nutrients and therefore possibly serve as major or minor pollinators of some plant species. They also often derive plant nutrients from other sources, such as extrafloral nectaries and honeydew. In a few cases, the plant-mosquito relationship is close, and mosquito pollination has been confirmed. Most plant species visited by mosquitoes, however, appear to depend on multiple means of pollination, particularly other flower-feeding insects. In addition, most mosquito species visit the flowers of many kinds of plants, possibly dispersing pollen in both biologically meaningful and irrelevant ways. This apparent lack of selectivity by both plants and mosquitoes liberates each of them from dependence on an unreliable pollen vehicle or nutrient source. A hypothetical pollinating role for the two top vectors of devastating human-disease pathogens, Anopheles gambiae or Aedes aegypti, relies on indirect evidence. So far, this evidence suggests that their participation in pollen transfer of native, introduced, or beneficial plants is negligible. The few plant species likely to be pollinated by these vectors are mostly invasive, harmful weeds associated with humans. That conclusion draws support from four characteristics of these vectors: (1) the numerous alternative potential pollinators of the flowers they visit; (2) their common use of diverse non-floral sources of nutrients; (3) the females' infrequent sugar feeding and heavy reliance on human blood for energy; and (4) their relatively low population densities. From these traits it follows that focused suppression or elimination of these two vectors, by whatever means, is highly unlikely to have adverse effects on pollination in endemic biotic communities or on ornamental plants or food crops.

蚊子访花是为了获取糖分或其他营养物质,因此可能是某些植物物种的主要或次要授粉者。它们还经常从其他来源获取植物营养,例如花蜜和蜜露。在少数情况下,植物与蚊子的关系密切,蚊子授粉已被证实。不过,蚊子拜访的大多数植物物种似乎都依赖多种授粉方式,特别是其他食花昆虫。此外,大多数蚊子种类会光顾多种植物的花朵,可能以对生物有意义或无关紧要的方式传播花粉。植物和蚊子显然都没有选择性,这就使它们各自摆脱了对不可靠的花粉媒介或营养源的依赖。冈比亚按蚊和埃及伊蚊这两种破坏性人类疾病病原体的主要传播媒介的授粉作用假设依赖于间接证据。到目前为止,这些证据表明,它们在本地、引进或有益植物的花粉传播中的参与微乎其微。可能由这些媒介授粉的少数植物物种大多是与人类有关的入侵性有害杂草。这一结论可以从这些媒介的四个特点中得到支持:(1)它们所到之处的花朵有许多潜在的授粉者;(2)它们通常使用各种非花卉养分来源;(3)雌虫不经常摄取糖分,严重依赖人体血液获取能量;(4)它们的种群密度相对较低。根据这些特征,无论采用何种手段,集中抑制或消灭这两种媒介都不太可能对地方生物群落或观赏植物或粮食作物的授粉产生不利影响。
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引用次数: 0
Next-generation CRISPR technology for genome, epigenome and mitochondrial editing. 用于基因组、表观基因组和线粒体编辑的新一代 CRISPR 技术。
IF 2.7 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-08-19 DOI: 10.1007/s11248-024-00404-x
Cia-Hin Lau, Qing-Le Liang, Haibao Zhu

The application of rapidly growing CRISPR toolboxes and methods has great potential to transform biomedical research. Here, we provide a snapshot of up-to-date CRISPR toolboxes, then critically discuss the promises and hurdles associated with CRISPR-based nuclear genome editing, epigenome editing, and mitochondrial editing. The technical challenges and key solutions to realize epigenome editing in vivo, in vivo base editing and prime editing, mitochondrial editing in complex tissues and animals, and CRISPR-associated transposases and integrases in targeted genomic integration of very large DNA payloads are discussed. Lastly, we discuss the latest situation of the CRISPR/Cas9 clinical trials and provide perspectives on CRISPR-based gene therapy. Apart from technical shortcomings, ethical and societal considerations for CRISPR applications in human therapeutics and research are extensively highlighted.

快速发展的CRISPR工具箱和方法的应用具有改变生物医学研究的巨大潜力。在此,我们将简要介绍最新的 CRISPR 工具箱,然后批判性地讨论基于 CRISPR 的核基因组编辑、表观基因组编辑和线粒体编辑的前景和障碍。讨论了实现体内表观基因组编辑、体内碱基编辑和质粒编辑、复杂组织和动物中的线粒体编辑,以及 CRISPR 相关转座酶和整合酶在超大 DNA 有效载荷的靶向基因组整合中所面临的技术挑战和关键解决方案。最后,我们讨论了 CRISPR/Cas9 临床试验的最新情况,并对基于 CRISPR 的基因疗法进行了展望。除了技术缺陷之外,我们还广泛强调了在人类治疗和研究中应用 CRISPR 时的伦理和社会考虑因素。
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引用次数: 0
Correction to: WIF1 causes dysfunction of heart in transgenic mice. 更正:WIF1 导致转基因小鼠心脏功能障碍。
IF 2.7 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-08-15 DOI: 10.1007/s11248-024-00403-y
Dan Lu, Wei Dong, Xu Zhang, Xiongzhi Quan, Dan Bao, Yingdong Lu, Lianfeng Zhang
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引用次数: 0
Functional analysis of root-preferential oil palm metallothionein promoter in tobacco. 烟草根系偏好油棕金属硫蛋白启动子的功能分析
IF 2.7 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-08-09 DOI: 10.1007/s11248-024-00396-8
Subhi Siti Masura, Noor Azmi Shaharuddin, Mat Yunus Abdul Masani, Kuang-Lim Chan, Eng-Ti Leslie Low, Pek-Lan Chan, Abdul Rahman Siti Rahmah, Nadzirah Amiruddin, Mohd Puad Abdullah, Azzreena Mohamad Azzeme, Ghulam Kadir Ahmad Parveez, Omar Abd Rasid

Root-specific or preferential promoters are essential to genetically modify plants with beneficial root traits. We have characterised the promoter from an oil palm metallothionein gene (EgMT) and performed a serial 5' deletion analysis to identify the region(s) essential for transgenes expression in roots. Stable functional characterisation of tobacco transgenic lines using the T1 generation showed that a deletion construct, designated as RSP-2D (1107 bp), directed strong GUS expression at all stages of root development, particularly in mature roots. Other constructs, RSP-2A (2481 bp) and RSP-2C (1639 bp), drove GUS expression in roots with an intensity lower than RSP-2D. The promoter activity was also detectable in seed pods and immature seeds, albeit at lower levels than CaMV35S. The promoter activity may also be induced by wounding as intact GUS staining was observed at the flower- and leaf-cutting sites of T1 samples carrying either RSP-2C or RSP-2D constructs. The promoter sequence contains cis-acting elements that may act as negative regulators and be responsible for root specificity. The results further indicated that the 5' UTR and ATATT sequences are essential for strong promoter activity. This study highlights the potential of RSP-2D promoter as a tool for modifying root traits through genetic engineering.

根特异性或优先启动子对具有有益根系性状的植物转基因至关重要。我们对油棕金属硫蛋白基因(EgMT)的启动子进行了表征,并进行了一系列 5' 缺失分析,以确定转基因在根部表达所必需的区域。利用 T1 代对烟草转基因品系进行的稳定功能表征显示,一个名为 RSP-2D (1107 bp)的缺失构建体在根系发育的各个阶段都有很强的 GUS 表达,尤其是在成熟根系中。其他构建子 RSP-2A(2481 bp)和 RSP-2C(1639 bp)在根中的 GUS 表达强度低于 RSP-2D。在荚果和未成熟种子中也能检测到启动子活性,但水平低于 CaMV35S。该启动子活性也可能是由损伤诱导的,因为在携带 RSP-2C 或 RSP-2D 构建体的 T1 样品的切花和切叶部位观察到了完整的 GUS 染色。启动子序列中包含的顺式作用元件可能起到负调控作用,是根特异性的原因。研究结果进一步表明,5' UTR 和 ATATT 序列对强大的启动子活性至关重要。这项研究强调了 RSP-2D 启动子作为通过基因工程改造根系性状的工具的潜力。
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引用次数: 0
A Mouse Model for Conditional Expression of Activated β-Catenin in Epidermal Keratinocytes. 表皮角质形成细胞中活化β-Catenin条件表达的小鼠模型
IF 2.7 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-08-07 DOI: 10.1007/s11248-024-00402-z
Vineet K Maurya, Yan Ying, John P Lydon

We report the generation and characterization of the K5: CAT bigenic mouse in which the constitutively activated form of β-catenin (ΔN89 β-catenin) is conditionally expressed in cytokeratin-5 (K5) positive epidermal keratinocytes. Following short-term doxycycline intake during the telogen resting phase, the adult K5: CAT bigenic develops enlarged pilosebaceous units that expand deep into the dermis, an expansion usually observed during the anagen growth phase. Prolonged doxycycline treatment results in significant thickening and folding of the K5: CAT epidermis. During this persistent induction period, there is clear evidence of increased keratinocyte proliferation, particularly in the epidermal basal cell layer and the outer root sheath of the hair follicle. This unscheduled increase in cellular proliferation likely explains the decrease in hair density observed in the K5: CAT mouse following persistent doxycycline intake. Numerous hyperplastic endometrioid cysts, which display cornification toward their lumens, are also observed during this treatment period. Remarkably, de-induction of ΔN89 β-catenin expression through doxycycline withdrawal results in a marked reversal of the skin phenotype, suggesting that these morphological changes are dependent on continued signaling by β-catenin and/or its downstream molecular mediators. Joining a small group of mouse models for conditional β-catenin signaling, our K5: CAT mouse model will be particularly useful in identifying those molecular mediators of β-catenin that are responsible for initiating and maintaining these phenotypic responses in the K5: CAT skin. Such studies are predicted to shed more light on β-catenin signaling in epidermal epithelial morphogenesis, hair follicle cycling, and hair growth pathologies.

我们报告了 K5:CAT 双基因小鼠的产生和特征,在这种小鼠中,细胞角蛋白-5(K5)阳性表皮角质形成细胞中有条件地表达构成性激活形式的 β-catenin(ΔN89 β-catenin)。在休止期短期摄入强力霉素后,成年 K5: CAT 大鼠会出现增大的皮脂腺单位,并向真皮深层扩展,这种扩展通常在生长期观察到。长期强力霉素治疗会导致 K5:CAT 表皮显著增厚和褶皱。在这一持续诱导期,有明显证据表明角质细胞增殖增加,特别是在表皮基底细胞层和毛囊外根鞘。这种非计划性的细胞增殖可能是K5:CAT小鼠在持续摄入强力霉素后毛发密度下降的原因。在这一治疗期间,还观察到许多增生的子宫内膜样囊肿,这些囊肿的管腔呈粟粒状。值得注意的是,通过停用强力霉素来减少ΔN89 β-catenin的表达会导致皮肤表型的明显逆转,这表明这些形态学变化依赖于β-catenin和/或其下游分子介质的持续信号转导。我们的 K5: CAT 小鼠模型加入了一小群条件性 β-catenin信号转导小鼠模型的行列,它将特别有助于鉴定那些负责启动和维持 K5: CAT 皮肤表型反应的 β-catenin分子介质。预计这些研究将为表皮上皮形态发生、毛囊循环和毛发生长病理中的β-catenin信号转导提供更多的信息。
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引用次数: 0
Precision breeding in agriculture and food systems in the United Kingdom. 英国农业和食品系统中的精准育种。
IF 2.7 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-08-06 DOI: 10.1007/s11248-024-00397-7
Oli Watson, Sadiye Hayta

In recent years there have been major advances in precision breeding technologies, such as gene editing, that offer promising solutions to revolutionise global crop production and tackle the pressing issues in food systems. The UK has leading expertise in genomics, and research is already taking place to develop crops with improved resilience to climate change, resistance to disease and less reliance on chemical inputs. In March 2023, the Genetic Technology (Precision Breeding) Act received Royal Assent and passed into UK law. It provides a framework from which to build more proportionate regulations for plants and animals made using genetic technologies which contain genetic changes that could also arise through traditional breeding-known as 'Precision Bred Organisms'. New legislation and the utilization of UK world-leading research could help to enhance the efficiency of breeding systems and enable the development of plants and animals that are healthier, better for the environment and more resilient to climate change.

近年来,基因编辑等精准育种技术取得了重大进展,为彻底改变全球作物生产和解决粮食系统的紧迫问题提供了前景广阔的解决方案。英国在基因组学方面拥有领先的专业知识,目前已在开展研究,以开发具有更强抵御气候变化能力、抗病能力和更少依赖化学投入的作物。2023 年 3 月,《基因技术(精准育种)法案》获得皇室批准,成为英国法律。该法案提供了一个框架,据此可为利用基因技术制造的动植物制定更相称的法规,这些动植物含有通过传统育种也可能产生的基因变化,即 "精准育种生物"。新的立法和利用英国世界领先的研究成果将有助于提高育种系统的效率,并能培育出更健康、对环境更有利、对气候变化更有适应力的动植物。
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引用次数: 0
Public perception of folate-biofortified genetically modified lettuce varieties in Brazil. 巴西公众对叶酸生物强化转基因莴苣品种的看法。
IF 2.7 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-08-05 DOI: 10.1007/s11248-024-00400-1
Thaís de Moura Cipriano, Maria Thereza Macedo Pedroso, Isis Amanda de Paula Nunes, Lídia Nascimento Queiroz, Francisco José Lima Aragão

Lettuce is one of the most widely consumed vegetables in the world, commonly eaten fresh in salads, sandwiches, wraps, and as a garnish in various dishes. Consequently, it is a very promising vehicle to deliver vitamins, such as folate (vitamin B9), to a specific population using biofortified varieties generated by conventional or molecular breeding. A new genetically modified lettuce was generated with increased folate content. However, some issues related to public perception regarding this technology should still be evaluated. The aim of this study was to analyze whether consumers are willing to accept a folate-biofortified GM lettuce that could become available to the Brazilian market. A questionnaire involving several issues regarding lettuce consumption was answered by 2,391 people from almost all Brazilian states. When informed that the folic acid biofortified lettuce is a transgenic plant, 46.1% of respondents stated that they would eat it and 30.5% stated that it would be a possibility. This study demonstrated that if there is any explanation regarding the advantage in relation to the use of biotechnology, like enrichment with folic acid, the number of people who accept it increases.

生菜是世界上食用最广泛的蔬菜之一,通常作为新鲜沙拉、三明治、卷饼食用,也可作为各种菜肴的点缀。因此,利用传统育种或分子育种产生的生物强化品种向特定人群提供叶酸(维生素 B9)等维生素是一种非常有前景的途径。一种新的转基因莴苣的叶酸含量有所增加。然而,与公众对这项技术的看法有关的一些问题仍有待评估。本研究旨在分析消费者是否愿意接受叶酸生物强化转基因莴苣进入巴西市场。来自巴西几乎所有州的 2391 人回答了一份调查问卷,其中涉及有关生菜消费的多个问题。当得知叶酸生物强化莴苣是转基因植物时,46.1% 的受访者表示会食用,30.5% 的受访者表示有可能食用。这项研究表明,如果对使用生物技术(如叶酸强化)的好处进行解释,接受的人数就会增加。
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引用次数: 0
Expression of a single-chain monellin (MNEI) mutant with enhanced stability in transgenic mice milk. 在转基因小鼠乳汁中表达稳定性增强的单链蒙奈林(MNEI)突变体。
IF 2.7 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-08-01 Epub Date: 2024-06-11 DOI: 10.1007/s11248-024-00389-7
Rui Lu, Xiaoming Li, Jian Hu, Yancui Wang, Le Jin

Monellin is a sweet protein that may be used as a safe and healthy sweetener. However, due to its low stability, the application of monellin is currently very limited. Here, we describe a wild-type, a double-sites mutant (E2N/E23A) and a triple-sites mutant (N14A/E23Q/S76Y) of single-chain monellin (MNEI) expressed in transgenic mice milk. Based on enzyme-linked immunoassay (ELISA), Western blot, and sweetness intensity testing, their sweetness and stability were compared. After boiling for 2 min at different pH conditions (2.5, 5.1, 6.8, and 8.2), N14A/E23Q/S76Y-MNEI showed significantly higher sweetness and stability than the wild-type and E2N/E23A-MNEI. These results suggest that N14A/E23Q/S76Y-MNEI shows remarkable potential as a sweetener in the future.

莫奈林是一种甜蛋白,可用作安全健康的甜味剂。然而,由于其稳定性较低,莫奈林的应用目前非常有限。在这里,我们描述了在转基因小鼠牛奶中表达的单链莫奈林(MNEI)的野生型、双位点突变体(E2N/E23A)和三位点突变体(N14A/E23Q/S76Y)。根据酶联免疫吸附(ELISA)、Western 印迹和甜度强度测试,比较了它们的甜度和稳定性。在不同的 pH 条件(2.5、5.1、6.8 和 8.2)下煮沸 2 分钟后,N14A/E23Q/S76Y-MNEI 的甜度和稳定性明显高于野生型和 E2N/E23A-MNEI。这些结果表明,N14A/E23Q/S76Y-MNEI 在未来作为甜味剂具有显著的潜力。
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引用次数: 0
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Transgenic Research
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