Pub Date : 2025-02-01Epub Date: 2024-10-01DOI: 10.1016/j.tplants.2024.09.009
Marcelle Ferreira-Silva, Lázara A S Silva, Welder A Silva, Wagner L Araújo
Regulation of stomatal aperture is paramount in drought-stress responses. Recently, Yang et al. demonstrated how microRNA-plantacyanin (PCY) regulates stomata movement by revealing a novel mechanism responsive to abscisic acid (ABA) that controls reactive oxygen species (ROS) in guard cells. This sets a precedent for using miRNAs as a new target for stress-resistance genetic engineering.
{"title":"The power of small: microRNAs modulating stomatal movement.","authors":"Marcelle Ferreira-Silva, Lázara A S Silva, Welder A Silva, Wagner L Araújo","doi":"10.1016/j.tplants.2024.09.009","DOIUrl":"10.1016/j.tplants.2024.09.009","url":null,"abstract":"<p><p>Regulation of stomatal aperture is paramount in drought-stress responses. Recently, Yang et al. demonstrated how microRNA-plantacyanin (PCY) regulates stomata movement by revealing a novel mechanism responsive to abscisic acid (ABA) that controls reactive oxygen species (ROS) in guard cells. This sets a precedent for using miRNAs as a new target for stress-resistance genetic engineering.</p>","PeriodicalId":23264,"journal":{"name":"Trends in Plant Science","volume":" ","pages":"122-124"},"PeriodicalIF":17.3,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142366583","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Artemisinin, a potent antimalarial compound, is predominantly derived from Artemisia annua. The uniqueness of artemisinin production in A. annua lies in its complex biochemical pathways and genetic composition, distinguishing it from other plant species, even within the Asteraceae family. In this review, we investigate the potential of A. annua for artemisinin production, drawing evidence from natural populations and mutants. Leveraging high-quality whole-genome sequence analyses, we offer insights into the evolution of artemisinin biosynthesis. We also highlight current understanding of the protective functions of artemisinin in A. annua in response to both biotic and abiotic stresses. In addition, we explore the mechanisms used by A. annua to mitigate the phytotoxicity generated by artemisinin catabolism.
{"title":"The evolutionary advantage of artemisinin production by Artemisia annua.","authors":"Qinggang Yin, Li Xiang, Xiaoyan Han, Yujun Zhang, Ruiqing Lyu, Ling Yuan, Shilin Chen","doi":"10.1016/j.tplants.2024.09.006","DOIUrl":"10.1016/j.tplants.2024.09.006","url":null,"abstract":"<p><p>Artemisinin, a potent antimalarial compound, is predominantly derived from Artemisia annua. The uniqueness of artemisinin production in A. annua lies in its complex biochemical pathways and genetic composition, distinguishing it from other plant species, even within the Asteraceae family. In this review, we investigate the potential of A. annua for artemisinin production, drawing evidence from natural populations and mutants. Leveraging high-quality whole-genome sequence analyses, we offer insights into the evolution of artemisinin biosynthesis. We also highlight current understanding of the protective functions of artemisinin in A. annua in response to both biotic and abiotic stresses. In addition, we explore the mechanisms used by A. annua to mitigate the phytotoxicity generated by artemisinin catabolism.</p>","PeriodicalId":23264,"journal":{"name":"Trends in Plant Science","volume":" ","pages":"213-226"},"PeriodicalIF":17.3,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142372953","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-01Epub Date: 2024-10-09DOI: 10.1016/j.tplants.2024.09.016
Yuri G Figueiredo, Karla Gasparini, Mustafa Bulut, Alisdair R Fernie, Agustin Zsögön
In a recent study, Satterlee et al. found that the repeated emergence of prickleless varieties in Solanaceae species is a convergent trait caused by loss of function in the cytokinin-activating enzyme LONELY GUY (LOG). New prickleless forms can be created in wild and domesticated forms using gene editing.
{"title":"The genetic basis of prickle loss in the Solanaceae.","authors":"Yuri G Figueiredo, Karla Gasparini, Mustafa Bulut, Alisdair R Fernie, Agustin Zsögön","doi":"10.1016/j.tplants.2024.09.016","DOIUrl":"10.1016/j.tplants.2024.09.016","url":null,"abstract":"<p><p>In a recent study, Satterlee et al. found that the repeated emergence of prickleless varieties in Solanaceae species is a convergent trait caused by loss of function in the cytokinin-activating enzyme LONELY GUY (LOG). New prickleless forms can be created in wild and domesticated forms using gene editing.</p>","PeriodicalId":23264,"journal":{"name":"Trends in Plant Science","volume":" ","pages":"119-121"},"PeriodicalIF":17.3,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142401424","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-01Epub Date: 2024-10-26DOI: 10.1016/j.tplants.2024.09.011
José Crossa, Osval A Montesinos-Lopez, Germano Costa-Neto, Paolo Vitale, Johannes W R Martini, Daniel Runcie, Roberto Fritsche-Neto, Abelardo Montesinos-Lopez, Paulino Pérez-Rodríguez, Guillermo Gerard, Susanna Dreisigacker, Leonardo Crespo-Herrera, Carolina Saint Pierre, Morten Lillemo, Jaime Cuevas, Alison Bentley, Rodomiro Ortiz
Statistical machine learning (ML) extracts patterns from extensive genomic, phenotypic, and environmental data. ML algorithms automatically identify relevant features and use cross-validation to ensure robust models and improve prediction reliability in new lines. Furthermore, ML analyses of genotype-by-environment (G×E) interactions can offer insights into the genetic factors that affect performance in specific environments. By leveraging historical breeding data, ML streamlines strategies and automates analyses to reveal genomic patterns. In this review we examine the transformative impact of big data, including multi-trait genomics, phenomics, and environmental covariables, on genomic-enabled prediction in plant breeding. We discuss how big data and ML are revolutionizing the field by enhancing prediction accuracy, deepening our understanding of G×E interactions, and optimizing breeding strategies through the analysis of extensive and diverse datasets.
统计机器学习(ML)可从大量基因组、表型和环境数据中提取模式。ML 算法能自动识别相关特征,并利用交叉验证确保模型的稳健性,提高新品系的预测可靠性。此外,通过 ML 分析基因型与环境(G×E)的交互作用,可以深入了解影响特定环境中表现的遗传因素。通过利用历史育种数据,ML 简化了策略并使分析自动化,从而揭示基因组模式。在本综述中,我们探讨了大数据(包括多性状基因组学、表型组学和环境协变量)对植物育种中基因组预测的变革性影响。我们将讨论大数据和 ML 如何通过提高预测准确性、加深对 G×E 相互作用的理解以及通过分析广泛而多样的数据集优化育种策略来彻底改变这一领域。
{"title":"Machine learning algorithms translate big data into predictive breeding accuracy.","authors":"José Crossa, Osval A Montesinos-Lopez, Germano Costa-Neto, Paolo Vitale, Johannes W R Martini, Daniel Runcie, Roberto Fritsche-Neto, Abelardo Montesinos-Lopez, Paulino Pérez-Rodríguez, Guillermo Gerard, Susanna Dreisigacker, Leonardo Crespo-Herrera, Carolina Saint Pierre, Morten Lillemo, Jaime Cuevas, Alison Bentley, Rodomiro Ortiz","doi":"10.1016/j.tplants.2024.09.011","DOIUrl":"10.1016/j.tplants.2024.09.011","url":null,"abstract":"<p><p>Statistical machine learning (ML) extracts patterns from extensive genomic, phenotypic, and environmental data. ML algorithms automatically identify relevant features and use cross-validation to ensure robust models and improve prediction reliability in new lines. Furthermore, ML analyses of genotype-by-environment (G×E) interactions can offer insights into the genetic factors that affect performance in specific environments. By leveraging historical breeding data, ML streamlines strategies and automates analyses to reveal genomic patterns. In this review we examine the transformative impact of big data, including multi-trait genomics, phenomics, and environmental covariables, on genomic-enabled prediction in plant breeding. We discuss how big data and ML are revolutionizing the field by enhancing prediction accuracy, deepening our understanding of G×E interactions, and optimizing breeding strategies through the analysis of extensive and diverse datasets.</p>","PeriodicalId":23264,"journal":{"name":"Trends in Plant Science","volume":" ","pages":"167-184"},"PeriodicalIF":17.3,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142508729","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-01Epub Date: 2024-11-06DOI: 10.1016/j.tplants.2024.10.016
José López-Bucio
The phytohormone auxin (indole-3-acetic acid; IAA) increases the efficacy of cancer treatment. IAA is a universal molecule, being produced by bacteria, fungi, and plants. Therefore, incorporating IAA-rich products derived from microbes or plants, such as yoghurt, probiotics, microgreens, and fresh carrots into the diet may be promising for disease management.
{"title":"Dietary auxin may help patients to fight cancer.","authors":"José López-Bucio","doi":"10.1016/j.tplants.2024.10.016","DOIUrl":"10.1016/j.tplants.2024.10.016","url":null,"abstract":"<p><p>The phytohormone auxin (indole-3-acetic acid; IAA) increases the efficacy of cancer treatment. IAA is a universal molecule, being produced by bacteria, fungi, and plants. Therefore, incorporating IAA-rich products derived from microbes or plants, such as yoghurt, probiotics, microgreens, and fresh carrots into the diet may be promising for disease management.</p>","PeriodicalId":23264,"journal":{"name":"Trends in Plant Science","volume":" ","pages":"134-136"},"PeriodicalIF":17.3,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142606248","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-01Epub Date: 2024-10-26DOI: 10.1016/j.tplants.2024.10.002
Sebastian Garcia-Daga, Stuart J Roy, Matthew Gilliham
Salt contamination of soils and irrigation water is a significant environmental concern for crop production. Leaf sodium (Na+) exclusion is commonly proposed to be a key subtrait of salt tolerance for many crop plants. High-Affinity Potassium (K+) Transporter 1 (HKT1) proteins have previously been identified as major controllers of leaf Na+ exclusion across diverse species. However, leaf Na+ exclusion does not always correlate with salt tolerance. We discuss literature which shows leaf Na+ accumulation can, in some circumstances, be tolerated without a detrimental effect on yield when HKT1 still functions to exclude Na+ from reproductive tissues. We conclude that, by having an ultimate role in the protection of reproductive performance, HKT1s' role in adaptation to salinity warrants redefinition.
{"title":"Redefining the role of sodium exclusion within salt tolerance.","authors":"Sebastian Garcia-Daga, Stuart J Roy, Matthew Gilliham","doi":"10.1016/j.tplants.2024.10.002","DOIUrl":"10.1016/j.tplants.2024.10.002","url":null,"abstract":"<p><p>Salt contamination of soils and irrigation water is a significant environmental concern for crop production. Leaf sodium (Na<sup>+</sup>) exclusion is commonly proposed to be a key subtrait of salt tolerance for many crop plants. High-Affinity Potassium (K<sup>+</sup>) Transporter 1 (HKT1) proteins have previously been identified as major controllers of leaf Na<sup>+</sup> exclusion across diverse species. However, leaf Na<sup>+</sup> exclusion does not always correlate with salt tolerance. We discuss literature which shows leaf Na<sup>+</sup> accumulation can, in some circumstances, be tolerated without a detrimental effect on yield when HKT1 still functions to exclude Na<sup>+</sup> from reproductive tissues. We conclude that, by having an ultimate role in the protection of reproductive performance, HKT1s' role in adaptation to salinity warrants redefinition.</p>","PeriodicalId":23264,"journal":{"name":"Trends in Plant Science","volume":" ","pages":"137-146"},"PeriodicalIF":17.3,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142508731","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-01-31DOI: 10.1016/j.tplants.2025.01.003
Qinsong Yang, Jian Wu, Guolei Li
Dormancy-growth cycles are crucial for seasonal adaptation in long-lived trees, yet the underlying mechanisms remain poorly understood despite decades of research. A recent study by Pandey et al. revealed a key mechanism, low-temperature-regulated opening of plasmodesmata (PD), providing new insight into how cell-cell communication controls dormancy release.
{"title":"Control of cell-cell communication and deciding when to grow.","authors":"Qinsong Yang, Jian Wu, Guolei Li","doi":"10.1016/j.tplants.2025.01.003","DOIUrl":"https://doi.org/10.1016/j.tplants.2025.01.003","url":null,"abstract":"<p><p>Dormancy-growth cycles are crucial for seasonal adaptation in long-lived trees, yet the underlying mechanisms remain poorly understood despite decades of research. A recent study by Pandey et al. revealed a key mechanism, low-temperature-regulated opening of plasmodesmata (PD), providing new insight into how cell-cell communication controls dormancy release.</p>","PeriodicalId":23264,"journal":{"name":"Trends in Plant Science","volume":" ","pages":""},"PeriodicalIF":17.3,"publicationDate":"2025-01-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143075426","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-01-31DOI: 10.1016/j.tplants.2025.01.006
Md Atikur Rahman, Md Mahadi Hasan, Francisco J Corpas
Strengthening plant physiological traits is crucial for sustainable plant improvement. The underlying molecular mechanisms of rhodopsin-based plant improvement remain largely unknown. However, a recent study by Ding et al. offers some insights by exploring how light-gated channelrhodopsins regulate cytosolic Ca2+ conductance, reactive oxygen species (ROS) signals, and plant defense responses in tobacco.
{"title":"Leveraging light-gated channelrhodopsins for strengthening plant physiological responses.","authors":"Md Atikur Rahman, Md Mahadi Hasan, Francisco J Corpas","doi":"10.1016/j.tplants.2025.01.006","DOIUrl":"https://doi.org/10.1016/j.tplants.2025.01.006","url":null,"abstract":"<p><p>Strengthening plant physiological traits is crucial for sustainable plant improvement. The underlying molecular mechanisms of rhodopsin-based plant improvement remain largely unknown. However, a recent study by Ding et al. offers some insights by exploring how light-gated channelrhodopsins regulate cytosolic Ca<sup>2+</sup> conductance, reactive oxygen species (ROS) signals, and plant defense responses in tobacco.</p>","PeriodicalId":23264,"journal":{"name":"Trends in Plant Science","volume":" ","pages":""},"PeriodicalIF":17.3,"publicationDate":"2025-01-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143075518","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-01-30DOI: 10.1016/j.tplants.2025.01.005
Muhammad Kamran, Mark T Waters
Engineering crops to withstand environmental stresses is critical for addressing climate change and food insecurity. Recently, Khan et al. developed CRISPR interference (CRISPRi)-based synthetic gene circuits to program gene expression in plants. Their findings highlight the potential of these circuits to advance the development of stress-resilient crops.
{"title":"Engineering crop resilience with synthetic gene circuits.","authors":"Muhammad Kamran, Mark T Waters","doi":"10.1016/j.tplants.2025.01.005","DOIUrl":"https://doi.org/10.1016/j.tplants.2025.01.005","url":null,"abstract":"<p><p>Engineering crops to withstand environmental stresses is critical for addressing climate change and food insecurity. Recently, Khan et al. developed CRISPR interference (CRISPRi)-based synthetic gene circuits to program gene expression in plants. Their findings highlight the potential of these circuits to advance the development of stress-resilient crops.</p>","PeriodicalId":23264,"journal":{"name":"Trends in Plant Science","volume":" ","pages":""},"PeriodicalIF":17.3,"publicationDate":"2025-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143075499","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}