Traditional antifungal agents such as polyene, azole, and echinocandin antifungals are restricted because of antifungal resistance and off-target effects. Given these limitations, there is an urgent need to explore novel antifungal strategies by identifying alternative targets. RNA modifications, such as m6A, m5C, m1A, m7G, s2U, ac4C, and A-to-I editing, hold promise as such targets on the basis of their roles in post-transcriptional regulation in plant pathogenic fungi, affecting RNA processing, stability, translation, and localization. This review summarizes the current understanding of RNA modifications in plant pathogenic fungi, focusing on their roles in infection and their potential as novel antifungal targets. While promising, the field is still emerging, and further experimental validation is essential to translate these findings into practical antifungal strategies.
{"title":"RNA modifications in plant pathogenic fungi: from epitranscriptomics to antifungal strategies.","authors":"Hong Hu, Yinan Li, Ziwei Lv, Zhiguang Qu, Zhipeng Zhou, Xiao-Lin Chen","doi":"10.1016/j.tim.2025.07.007","DOIUrl":"10.1016/j.tim.2025.07.007","url":null,"abstract":"<p><p>Traditional antifungal agents such as polyene, azole, and echinocandin antifungals are restricted because of antifungal resistance and off-target effects. Given these limitations, there is an urgent need to explore novel antifungal strategies by identifying alternative targets. RNA modifications, such as m<sup>6</sup>A, m<sup>5</sup>C, m<sup>1</sup>A, m<sup>7</sup>G, s<sup>2</sup>U, ac<sup>4</sup>C, and A-to-I editing, hold promise as such targets on the basis of their roles in post-transcriptional regulation in plant pathogenic fungi, affecting RNA processing, stability, translation, and localization. This review summarizes the current understanding of RNA modifications in plant pathogenic fungi, focusing on their roles in infection and their potential as novel antifungal targets. While promising, the field is still emerging, and further experimental validation is essential to translate these findings into practical antifungal strategies.</p>","PeriodicalId":23275,"journal":{"name":"Trends in Microbiology","volume":" ","pages":"171-184"},"PeriodicalIF":14.9,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144804878","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-01Epub Date: 2026-01-17DOI: 10.1016/j.tim.2025.12.012
Stanislav Stuchlik, Zdenko Levarski
The recently published paper by Mital et al. elegantly employs a simple yet extremely powerful and effective approach to increase the solubility of Escherichia coli-produced proteins usually destined for aggregation.
{"title":"Host-centric approach toward increased recombinant protein solubility.","authors":"Stanislav Stuchlik, Zdenko Levarski","doi":"10.1016/j.tim.2025.12.012","DOIUrl":"10.1016/j.tim.2025.12.012","url":null,"abstract":"<p><p>The recently published paper by Mital et al. elegantly employs a simple yet extremely powerful and effective approach to increase the solubility of Escherichia coli-produced proteins usually destined for aggregation.</p>","PeriodicalId":23275,"journal":{"name":"Trends in Microbiology","volume":" ","pages":"126-127"},"PeriodicalIF":14.9,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145999043","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-01Epub Date: 2026-01-27DOI: 10.1016/j.tim.2025.12.008
Yanan Zhang, Shu Jeffrey Zhu
Gut microbiota-derived bile acids are emerging as pivotal regulators of viral pathogenesis. They exhibit dual roles by directly blocking or promoting viral entry, while also systemically tuning immune responses. This forum discusses how spatiotemporal mapping of these interactions can address unresolved questions and inspire novel microbiome-based antiviral strategies.
{"title":"Role of bile acid metabolites in regulating viral infections.","authors":"Yanan Zhang, Shu Jeffrey Zhu","doi":"10.1016/j.tim.2025.12.008","DOIUrl":"10.1016/j.tim.2025.12.008","url":null,"abstract":"<p><p>Gut microbiota-derived bile acids are emerging as pivotal regulators of viral pathogenesis. They exhibit dual roles by directly blocking or promoting viral entry, while also systemically tuning immune responses. This forum discusses how spatiotemporal mapping of these interactions can address unresolved questions and inspire novel microbiome-based antiviral strategies.</p>","PeriodicalId":23275,"journal":{"name":"Trends in Microbiology","volume":"34 2","pages":"134-137"},"PeriodicalIF":14.9,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146120263","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-01Epub Date: 2025-11-26DOI: 10.1016/j.tim.2025.10.017
Elizaveta Gorbunova, Marjolein Heddes, Daan R van der Veen, Silke Kiessling
Daily dynamics in the composition and function of the human gut microbiota have been recognized since 2014, yet the molecular mechanisms underlying these rhythms and their impact on human health remain unclear. Disrupted microbial oscillations are increasingly linked to metabolic diseases such as obesity and type 2 diabetes, and to inflammatory conditions in the gut and beyond. We propose advancing from observational studies to experimentally targeting microbial rhythms and clocks to uncover causal relationships. In vivo and in vitro models offer opportunities to uncover how signaling cues and dietary patterns influence microbial oscillations and, in turn, host metabolic and immune functions. Manipulating microbial rhythmicity independent of host physiology represents a new frontier for microbiota-based strategies to promote health and prevent diseases.
{"title":"Microbial rhythms - a new target to promote health?","authors":"Elizaveta Gorbunova, Marjolein Heddes, Daan R van der Veen, Silke Kiessling","doi":"10.1016/j.tim.2025.10.017","DOIUrl":"10.1016/j.tim.2025.10.017","url":null,"abstract":"<p><p>Daily dynamics in the composition and function of the human gut microbiota have been recognized since 2014, yet the molecular mechanisms underlying these rhythms and their impact on human health remain unclear. Disrupted microbial oscillations are increasingly linked to metabolic diseases such as obesity and type 2 diabetes, and to inflammatory conditions in the gut and beyond. We propose advancing from observational studies to experimentally targeting microbial rhythms and clocks to uncover causal relationships. In vivo and in vitro models offer opportunities to uncover how signaling cues and dietary patterns influence microbial oscillations and, in turn, host metabolic and immune functions. Manipulating microbial rhythmicity independent of host physiology represents a new frontier for microbiota-based strategies to promote health and prevent diseases.</p>","PeriodicalId":23275,"journal":{"name":"Trends in Microbiology","volume":" ","pages":"138-148"},"PeriodicalIF":14.9,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145640300","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-01Epub Date: 2025-10-30DOI: 10.1016/j.tim.2025.10.004
Chennan Yang, Xiaobo Zhong, Dennis Claessen
Cellulose, a ubiquitous polysaccharide with critical roles in life, provides structural integrity to cells in plants and aids biofilm formation in many bacteria. Although bacterial cellulose biosynthesis is well studied in certain groups, its diversity in other lineages remains underexplored. Recent insights from filamentous streptomycetes reveal that cellulose is directly incorporated into the cell wall at growing tips, likely protecting hyphae during growth. This review examines cellulose biosynthesis, regulation, and secretion mechanisms in Streptomyces, and highlights how its structural organization supports distinct cellular functions. We also discuss the evolutionary context of this system. Together, these insights broaden our understanding of bacterial cellulose diversity and suggest that cellulose biosynthesis has evolved convergently to support different lifestyles, growth modes, and morphogenetic strategies.
{"title":"Cellulose biosynthesis and function in Streptomyces.","authors":"Chennan Yang, Xiaobo Zhong, Dennis Claessen","doi":"10.1016/j.tim.2025.10.004","DOIUrl":"10.1016/j.tim.2025.10.004","url":null,"abstract":"<p><p>Cellulose, a ubiquitous polysaccharide with critical roles in life, provides structural integrity to cells in plants and aids biofilm formation in many bacteria. Although bacterial cellulose biosynthesis is well studied in certain groups, its diversity in other lineages remains underexplored. Recent insights from filamentous streptomycetes reveal that cellulose is directly incorporated into the cell wall at growing tips, likely protecting hyphae during growth. This review examines cellulose biosynthesis, regulation, and secretion mechanisms in Streptomyces, and highlights how its structural organization supports distinct cellular functions. We also discuss the evolutionary context of this system. Together, these insights broaden our understanding of bacterial cellulose diversity and suggest that cellulose biosynthesis has evolved convergently to support different lifestyles, growth modes, and morphogenetic strategies.</p>","PeriodicalId":23275,"journal":{"name":"Trends in Microbiology","volume":" ","pages":"207-216"},"PeriodicalIF":14.9,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145422953","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-01Epub Date: 2026-01-16DOI: 10.1016/j.tim.2025.12.007
Stephan Lane, Yong-Su Jin
Palur et al. developed a tunable microbial platform that converts d-glucose into d-sedoheptulose and d-mannose at food-relevant levels. Their platform may be a starting point for exploring the metabolism of additional rare C7 sugars while unlocking a wide array of natural products derived from d-sedoheptulose-7-phosphate.
{"title":"A tunable microbial factory for rare sugar coproduction.","authors":"Stephan Lane, Yong-Su Jin","doi":"10.1016/j.tim.2025.12.007","DOIUrl":"10.1016/j.tim.2025.12.007","url":null,"abstract":"<p><p>Palur et al. developed a tunable microbial platform that converts d-glucose into d-sedoheptulose and d-mannose at food-relevant levels. Their platform may be a starting point for exploring the metabolism of additional rare C7 sugars while unlocking a wide array of natural products derived from d-sedoheptulose-7-phosphate.</p>","PeriodicalId":23275,"journal":{"name":"Trends in Microbiology","volume":" ","pages":"128-129"},"PeriodicalIF":14.9,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145994606","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-01Epub Date: 2025-08-23DOI: 10.1016/j.tim.2025.07.012
Jiaqi Fu, Zhao-Qing Luo, Jiazhang Qiu
Protein post-translational modifications (PTMs) serve as essential molecular switches that dynamically modulate cell signaling in response to developmental or external cues. Effective interference with host signaling is critical for successful infection, and such interference is often carried out by PTMs. It has long been believed that pathogens exploit host signaling pathways through biochemical mechanisms utilized by eukaryotic cells. Interestingly, several recent studies have revealed that some pathogenic bacteria employ orthogonal post-translational modifications (oPTMs) that are distinct from those in hosts for the creation of niches permissive for their replication. In this review, we highlight the catalytic mechanisms and biological functions of several oPTMs induced by bacterial virulence factors.
{"title":"Orthogonal post-translational modifications by bacterial effectors.","authors":"Jiaqi Fu, Zhao-Qing Luo, Jiazhang Qiu","doi":"10.1016/j.tim.2025.07.012","DOIUrl":"10.1016/j.tim.2025.07.012","url":null,"abstract":"<p><p>Protein post-translational modifications (PTMs) serve as essential molecular switches that dynamically modulate cell signaling in response to developmental or external cues. Effective interference with host signaling is critical for successful infection, and such interference is often carried out by PTMs. It has long been believed that pathogens exploit host signaling pathways through biochemical mechanisms utilized by eukaryotic cells. Interestingly, several recent studies have revealed that some pathogenic bacteria employ orthogonal post-translational modifications (oPTMs) that are distinct from those in hosts for the creation of niches permissive for their replication. In this review, we highlight the catalytic mechanisms and biological functions of several oPTMs induced by bacterial virulence factors.</p>","PeriodicalId":23275,"journal":{"name":"Trends in Microbiology","volume":" ","pages":"185-193"},"PeriodicalIF":14.9,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144970478","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}