Pub Date : 2024-05-29DOI: 10.1016/j.vibspec.2024.103695
Qifeng Li , Yunpeng Yang , Jianing Wu , Chunsheng Wei , Hua Xia , Yangguang Han , Yinguo Huang , Xiangyun Ma
Accurate quantification of bacteria is critical for ensuring food safety, advancing biomedical research, and a range of other pressing concerns. Raman spectroscopy is a popular technique for quantitative analysis due to its benefits of being fast, non-destructive, and highly sensitive. However, the accuracy of the transfer model is often limited by factors such as differences in equipment and environmental noise, which limits the popularization of Raman spectroscopy. In this paper, we propose an approach that overcomes this challenge by introducing a dual branch network based on Continuous Wavelet Transform (CWT) for model transfer. Our model comprises dual branches that perform distinct tasks. The spectral learning branch is responsible for extracting features from the spectral domain. The time-frequency map learning branch employs CNNs for extracting the multi-scale information-rich features. The proposed method is used for the quantitative analysis of Escherichia coli. The proposed approach significantly outperforms traditional methods in improving prediction accuracy. It offers a much-needed solution to the long-standing challenge of Raman spectroscopy in the field of bacterial quantitative analysis. With our approach, we can expect to see Raman spectroscopy more widely adopted in the future.
{"title":"Dual-branch transfer learning in Raman spectroscopy for bacterial quantitative analysis","authors":"Qifeng Li , Yunpeng Yang , Jianing Wu , Chunsheng Wei , Hua Xia , Yangguang Han , Yinguo Huang , Xiangyun Ma","doi":"10.1016/j.vibspec.2024.103695","DOIUrl":"https://doi.org/10.1016/j.vibspec.2024.103695","url":null,"abstract":"<div><p>Accurate quantification of bacteria is critical for ensuring food safety, advancing biomedical research, and a range of other pressing concerns. Raman spectroscopy is a popular technique for quantitative analysis due to its benefits of being fast, non-destructive, and highly sensitive. However, the accuracy of the transfer model is often limited by factors such as differences in equipment and environmental noise, which limits the popularization of Raman spectroscopy. In this paper, we propose an approach that overcomes this challenge by introducing a dual branch network based on Continuous Wavelet Transform (CWT) for model transfer. Our model comprises dual branches that perform distinct tasks. The spectral learning branch is responsible for extracting features from the spectral domain. The time-frequency map learning branch employs CNNs for extracting the multi-scale information-rich features. The proposed method is used for the quantitative analysis of Escherichia coli. The proposed approach significantly outperforms traditional methods in improving prediction accuracy. It offers a much-needed solution to the long-standing challenge of Raman spectroscopy in the field of bacterial quantitative analysis. With our approach, we can expect to see Raman spectroscopy more widely adopted in the future.</p></div>","PeriodicalId":23656,"journal":{"name":"Vibrational Spectroscopy","volume":"133 ","pages":"Article 103695"},"PeriodicalIF":2.5,"publicationDate":"2024-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141286556","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-27DOI: 10.1016/j.vibspec.2024.103694
Rafael de Oliveira , Antonio Carlos Sant’Ana
Dyes are important concerns regarding aquatic environmental contamination given their extensive industrial use and the occurrence of highly toxic and carcinogenic effects on the biota. In this work, photodegradation processes of the organic dye crystal violet (CV) by a hybrid plasmonic photocatalyst involving titanium dioxide (TiO2) and silver nanoparticles (AgNP), through irradiation with low-power visible light were studied, and the experiments were tracked by ultraviolet-visible absorption (UV–VIS) and surface-enhanced resonance Raman scattering (SERRS) spectroscopies. Enhanced photocatalytic activity was observed, reaching about 71, 80 and 87 % of CV removal with only 100 minutes of irradiation, depending on the Ag loading used. The high photocatalytic efficiency is further highlighted by the low energy consumption in the process, requiring only ca. 1.46 kW h L-1 in the best reaction condition. Quantum-mechanical calculations were used to the assignment of electronic spectra, as well as to the prediction of frontier molecular orbitals and atomic charges, aiming to propose mechanisms for radical attacks. Such results allow suggesting degradation processes involved mainly N-demethylation and bond breaking of central carbon. The presence of CV protonated species was also supported through Density Functional Theory (DFT) investigation. The integration of theoretical and experimental results allows proposing the formation of pararosaniline, phenol and benzophenone derivatives, which may have highest ecotoxicity than the original contaminant, outstanding the remarkable relevance of SERRS spectroscopy in monitoring such recalcitrant substances.
{"title":"Crystal violet degradation by visible light-driven AgNP/TiO2 hybrid photocatalyst tracked by SERRS spectroscopy","authors":"Rafael de Oliveira , Antonio Carlos Sant’Ana","doi":"10.1016/j.vibspec.2024.103694","DOIUrl":"https://doi.org/10.1016/j.vibspec.2024.103694","url":null,"abstract":"<div><p>Dyes are important concerns regarding aquatic environmental contamination given their extensive industrial use and the occurrence of highly toxic and carcinogenic effects on the biota. In this work, photodegradation processes of the organic dye crystal violet (CV) by a hybrid plasmonic photocatalyst involving titanium dioxide (TiO<sub>2</sub>) and silver nanoparticles (AgNP), through irradiation with low-power visible light were studied, and the experiments were tracked by ultraviolet-visible absorption (UV–VIS) and surface-enhanced resonance Raman scattering (SERRS) spectroscopies. Enhanced photocatalytic activity was observed, reaching about 71, 80 and 87 % of CV removal with only 100 minutes of irradiation, depending on the Ag loading used. The high photocatalytic efficiency is further highlighted by the low energy consumption in the process, requiring only ca. 1.46 kW h L<sup>-1</sup> in the best reaction condition. Quantum-mechanical calculations were used to the assignment of electronic spectra, as well as to the prediction of frontier molecular orbitals and atomic charges, aiming to propose mechanisms for radical attacks. Such results allow suggesting degradation processes involved mainly N-demethylation and bond breaking of central carbon. The presence of CV protonated species was also supported through Density Functional Theory (DFT) investigation. The integration of theoretical and experimental results allows proposing the formation of pararosaniline, phenol and benzophenone derivatives, which may have highest ecotoxicity than the original contaminant, outstanding the remarkable relevance of SERRS spectroscopy in monitoring such recalcitrant substances.</p></div>","PeriodicalId":23656,"journal":{"name":"Vibrational Spectroscopy","volume":"133 ","pages":"Article 103694"},"PeriodicalIF":2.5,"publicationDate":"2024-05-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141239810","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-01DOI: 10.1016/j.vibspec.2024.103697
Valeria Cardamuro , Bahar Faramarzi , Martina Moggio , Valerio Cosimo Elia , Marianna Portaccio , Nadia Diano , Lorenzo Manti , Maria Lepore
Radiation therapy, particularly X-ray-based treatment, is widely used against cancer due to its ability to induce cell death, hence local tumor control Recently, increasing attention has been devoted to the role of lipid metabolism in the radiation-induced response of tumor cells. This study utilized Attenuated Total Reflectance-Fourier Transform Infrared (ATR-FTIR) spectroscopy to examine the role of lipids in the response of hepatocarcinoma (HepG2) cells to X-ray radiation. Infrared spectra were acquired from lipids extracted from HepG2 cells exposed to different X-ray doses (0, 2, and 6 Gy). Results showed that X-ray exposure causes shifts in the peak positions in infrared spectra indicating biochemical changes in lipid components. The phosphate group asymmetric stretching band shifted to higher wave numbers in the 2 and 6 Gy exposed samples, likely due to alterations in membrane fluidity. The 2-Gy exposure led a reduction of sphingolipid, phospholipid, and fatty acid contributions that can be probably ascribed to apoptosis processes. The 6-Gy exposure triggered also changes in sphingolipid content potentially linked to increased lipid peroxidation supported by higher carbonyl contribution. This peroxidation results in smaller lipid fragments and various degradation products. The changes in sphingolipids are also confirmed by the analysis of different ratios between the areas of selected bands and the results of a mass spectroscopy investigation carried out on the same samples.
放射治疗,尤其是基于 X 射线的治疗,因其能够诱导细胞死亡,从而控制局部肿瘤而被广泛应用于癌症治疗。本研究利用衰减全反射-傅立叶变换红外光谱(ATR-FTIR)来研究脂质在肝癌(HepG2)细胞对 X 射线辐射的反应中的作用。从暴露于不同剂量(0、2 和 6 Gy)X 射线的 HepG2 细胞中提取的脂质获得了红外光谱。结果表明,X 射线照射导致红外光谱中的峰值位置发生移动,表明脂质成分发生了生化变化。在受到 2 和 6 Gy 照射的样本中,磷酸盐基团不对称伸展带移至更高的波数,这可能是由于膜流动性发生了改变。2Gy 暴露导致鞘脂类、磷脂类和脂肪酸类的贡献减少,这可能是由于细胞凋亡过程造成的。6-Gy照射也引发了鞘脂含量的变化,这可能与脂质过氧化反应的增加有关,因为羰基的贡献较高。这种过氧化反应会产生更小的脂质碎片和各种降解产物。对选定条带区域之间的不同比率进行分析,以及对相同样本进行质谱分析的结果,也证实了鞘脂的变化。
{"title":"Analysis of the X-ray induced changes in lipids extracted from hepatocarcinoma cells by means of ATR-FTIR spectroscopy","authors":"Valeria Cardamuro , Bahar Faramarzi , Martina Moggio , Valerio Cosimo Elia , Marianna Portaccio , Nadia Diano , Lorenzo Manti , Maria Lepore","doi":"10.1016/j.vibspec.2024.103697","DOIUrl":"https://doi.org/10.1016/j.vibspec.2024.103697","url":null,"abstract":"<div><p>Radiation therapy, particularly X-ray-based treatment, is widely used against cancer due to its ability to induce cell death, hence local tumor control Recently, increasing attention has been devoted to the role of lipid metabolism in the radiation-induced response of tumor cells. This study utilized Attenuated Total Reflectance-Fourier Transform Infrared (ATR-FTIR) spectroscopy to examine the role of lipids in the response of hepatocarcinoma (HepG2) cells to X-ray radiation. Infrared spectra were acquired from lipids extracted from HepG2 cells exposed to different X-ray doses (0, 2, and 6 Gy). Results showed that X-ray exposure causes shifts in the peak positions in infrared spectra indicating biochemical changes in lipid components. The phosphate group asymmetric stretching band shifted to higher wave numbers in the 2 and 6 Gy exposed samples, likely due to alterations in membrane fluidity. The 2-Gy exposure led a reduction of sphingolipid, phospholipid, and fatty acid contributions that can be probably ascribed to apoptosis processes. The 6-Gy exposure triggered also changes in sphingolipid content potentially linked to increased lipid peroxidation supported by higher carbonyl contribution. This peroxidation results in smaller lipid fragments and various degradation products. The changes in sphingolipids are also confirmed by the analysis of different ratios between the areas of selected bands and the results of a mass spectroscopy investigation carried out on the same samples.</p></div>","PeriodicalId":23656,"journal":{"name":"Vibrational Spectroscopy","volume":"132 ","pages":"Article 103697"},"PeriodicalIF":2.5,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141240133","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-01DOI: 10.1016/j.vibspec.2024.103693
Xue-Song Huo, Pu Chen, Jing-Yan Li, Yu-Peng Xu, Dan Liu, Xiao-Li Chu
The determination of the o-nitrotoluene (o-MNT) content in separation process of mononitrotoluene (MNT) is of interest, since it affects the purity of m-nitrotoluene (m-MNT) and p-nitrotoluene (p-MNT). In real-world applications, the calibration model inevitably requires dealing with complex extrapolation problems. Therefore, this study extracted the spectral features of the o-nitrotoluene based on the interval selection algorithm. The linear calibration method (partial least squares (PLS)) and nonlinear calibration methods (support vector machine (SVM), back propagation (BP), random forest (RF), extreme learning machine (ELM)) were used to build the calibration models based on o-nitrotoluene samples in different concentration ranges, and the prediction accuracy and robustness of the calibration model were compared. The results indicate that the effectiveness of different calibration methods is different when going from prediction accuracy to robustness. The prediction accuracy and robustness of RF models are not satisfactory. BP models, which are capable of producing very accurate results in terms of prediction accuracy, are not able to solve extrapolation problems. PLS model has more advantages in model prediction accuracy. ELM has shown the best behavior in terms of robustness of model, but is inferior to PLS in terms of prediction accuracy.
{"title":"Comparative study of linear and nonlinear calibration algorithm for extrapolation ability of near infrared spectroscopy quantitative analysis","authors":"Xue-Song Huo, Pu Chen, Jing-Yan Li, Yu-Peng Xu, Dan Liu, Xiao-Li Chu","doi":"10.1016/j.vibspec.2024.103693","DOIUrl":"10.1016/j.vibspec.2024.103693","url":null,"abstract":"<div><p>The determination of the o-nitrotoluene (o-MNT) content in separation process of mononitrotoluene (MNT) is of interest, since it affects the purity of m-nitrotoluene (m-MNT) and p-nitrotoluene (p-MNT). In real-world applications, the calibration model inevitably requires dealing with complex extrapolation problems. Therefore, this study extracted the spectral features of the o-nitrotoluene based on the interval selection algorithm. The linear calibration method (partial least squares (PLS)) and nonlinear calibration methods (support vector machine (SVM), back propagation (BP), random forest (RF), extreme learning machine (ELM)) were used to build the calibration models based on o-nitrotoluene samples in different concentration ranges, and the prediction accuracy and robustness of the calibration model were compared. The results indicate that the effectiveness of different calibration methods is different when going from prediction accuracy to robustness. The prediction accuracy and robustness of RF models are not satisfactory. BP models, which are capable of producing very accurate results in terms of prediction accuracy, are not able to solve extrapolation problems. PLS model has more advantages in model prediction accuracy. ELM has shown the best behavior in terms of robustness of model, but is inferior to PLS in terms of prediction accuracy.</p></div>","PeriodicalId":23656,"journal":{"name":"Vibrational Spectroscopy","volume":"132 ","pages":"Article 103693"},"PeriodicalIF":2.5,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141191874","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-01DOI: 10.1016/j.vibspec.2024.103691
Júlio César Silva , Talysson Felismino Moura , Raimundo Luiz da Silva Pereira , Thiago Sampaio de Freitas , Janaína Esmeraldo Rocha , Henrique Douglas Melo Coutinho , Gustavo Miguel Siqueira , Daniel Sampaio Alves , Gabriel Gonçalves Alencar , Isaac Moura Araújo , Ana Kamila Medeiros Lima , Paulo de Tarso Cavalcante Freire , Francisco Ferreira de Sousa , Gilberto Dantas Saraiva , Maísa Freire Cartaxo Pires de Sá , Francisco Nascimento Pereira Junior , João Hermínio da Silva
In recent years, many antibacterial agents have been produced with the aim of eradicating infectious diseases, but many of these agents are ineffective against the resistance presented by bacteria. It is currently estimated that more than 60 % of current antibiotics are ineffective, so the discovery of new drugs is vital. Among the compounds studied in recent years are polyoxotungstates, inorganic compounds targeted for their pharmacological properties. The aim of this study was therefore to chemically characterize two tungstates: calcium and sodium, and to evaluate their microbiological properties, both in combination with antibiotics and due to their ability to reverse the resistance process represented by the expression of the enzyme betalactamase. The microbiological tests were carried out using the microdilution technique, with colorimetric disclosure, using resazurin, and the chemical characterization and vibrational modes of the compounds were evaluated using Fourier transform infrared spectroscopy with attenuated total reflectance. Calcium tungstate showed four spectroscopic bands, located between 84 and 1915 cm−1, while sodium tungstate showed two bands at 335 and 935 cm−1. Calcium tungstate intensified the effect of gentamicin against the bacterium Escherichia coli 06, as well as reversing the mechanism of enzymatic resistance presented by the bacteria Staphylococcus aureus K-4100 and K-4414. Given the current scenario of resistance, these results represent new alternatives for the treatment of bacterial infections, allowing a better understanding of the properties of polyoxometalates. These results are unprecedented as far as the literature is concerned.
{"title":"FTIR analysis and antimicrobial activity of sodium tungstate and calcium tungstate","authors":"Júlio César Silva , Talysson Felismino Moura , Raimundo Luiz da Silva Pereira , Thiago Sampaio de Freitas , Janaína Esmeraldo Rocha , Henrique Douglas Melo Coutinho , Gustavo Miguel Siqueira , Daniel Sampaio Alves , Gabriel Gonçalves Alencar , Isaac Moura Araújo , Ana Kamila Medeiros Lima , Paulo de Tarso Cavalcante Freire , Francisco Ferreira de Sousa , Gilberto Dantas Saraiva , Maísa Freire Cartaxo Pires de Sá , Francisco Nascimento Pereira Junior , João Hermínio da Silva","doi":"10.1016/j.vibspec.2024.103691","DOIUrl":"10.1016/j.vibspec.2024.103691","url":null,"abstract":"<div><p>In recent years, many antibacterial agents have been produced with the aim of eradicating infectious diseases, but many of these agents are ineffective against the resistance presented by bacteria. It is currently estimated that more than 60 % of current antibiotics are ineffective, so the discovery of new drugs is vital. Among the compounds studied in recent years are polyoxotungstates, inorganic compounds targeted for their pharmacological properties. The aim of this study was therefore to chemically characterize two tungstates: calcium and sodium, and to evaluate their microbiological properties, both in combination with antibiotics and due to their ability to reverse the resistance process represented by the expression of the enzyme betalactamase. The microbiological tests were carried out using the microdilution technique, with colorimetric disclosure, using resazurin, and the chemical characterization and vibrational modes of the compounds were evaluated using Fourier transform infrared spectroscopy with attenuated total reflectance. Calcium tungstate showed four spectroscopic bands, located between 84 and 1915 cm<sup>−1</sup>, while sodium tungstate showed two bands at 335 and 935 cm<sup>−1</sup>. Calcium tungstate intensified the effect of gentamicin against the bacterium <em>Escherichia coli</em> 06, as well as reversing the mechanism of enzymatic resistance presented by the bacteria <em>Staphylococcus aureus</em> K-4100 and K-4414. Given the current scenario of resistance, these results represent new alternatives for the treatment of bacterial infections, allowing a better understanding of the properties of polyoxometalates. These results are unprecedented as far as the literature is concerned.</p></div>","PeriodicalId":23656,"journal":{"name":"Vibrational Spectroscopy","volume":"132 ","pages":"Article 103691"},"PeriodicalIF":2.5,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141042245","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-01DOI: 10.1016/j.vibspec.2024.103692
Yuwen Zhao , Zhiyao Li , Yueling Yan , Youqing Wen , Ying Ning , Zheng Li , Haixia Wang
Accurate identification and discrimination of bacteria is crucial for ensuring food safety and reducing pathogenic infections. This study presents a novel approach that combines surface-enhanced Raman scattering spectroscopy (SERS) with chemometric methods for discriminant analysis of a mixture of pathogenic bacteria into different types and proportions. Au@Ag@SiO2 composite nanomaterials were employed as the SERS substrate to collect Raman spectra of multiple pathogenic bacteria. Partial least squares discriminant analysis (PLS-DA) and orthogonal partial least squares discriminant analysis (OPLS-DA) methods were combined with standard normal variate (SNV) to discriminate the different species of mixed bacteria and the multiple proportion mixed bacterial samples, respectively. The results showed that SNV-PLS-DA had good classification performance in the discriminant analysis of different species of mixed bacteria, with an accuracy of 92% for the external test set. Furthermore, both SNV-PLS-DA and SNV-OPLS-DA models exhibited excellent classification performance in the discrimination of multiple pathogenic bacteria at different mixing proportions, achieving 100% accuracy in the external test set, but except for mixed samples of Escherichia coli and Salmonella typhimurium. Our method demonstrates the accurate capability of the SERS platform combined with chemometric methods in the discriminant analysis of multiple pathogenic bacteria at different species and mixing proportions, which provides novel insights for the synchronous analysis of multiple pathogenic bacteria.
{"title":"Discriminant analysis of a mixture of pathogenic bacteria into different types and proportions by surface-enhanced Raman scattering spectroscopy combined with chemometric methods","authors":"Yuwen Zhao , Zhiyao Li , Yueling Yan , Youqing Wen , Ying Ning , Zheng Li , Haixia Wang","doi":"10.1016/j.vibspec.2024.103692","DOIUrl":"10.1016/j.vibspec.2024.103692","url":null,"abstract":"<div><p>Accurate identification and discrimination of bacteria is crucial for ensuring food safety and reducing pathogenic infections. This study presents a novel approach that combines surface-enhanced Raman scattering spectroscopy (SERS) with chemometric methods for discriminant analysis of a mixture of pathogenic bacteria into different types and proportions. Au@Ag@SiO<sub>2</sub> composite nanomaterials were employed as the SERS substrate to collect Raman spectra of multiple pathogenic bacteria. Partial least squares discriminant analysis (PLS-DA) and orthogonal partial least squares discriminant analysis (OPLS-DA) methods were combined with standard normal variate (SNV) to discriminate the different species of mixed bacteria and the multiple proportion mixed bacterial samples, respectively. The results showed that SNV-PLS-DA had good classification performance in the discriminant analysis of different species of mixed bacteria, with an accuracy of 92% for the external test set. Furthermore, both SNV-PLS-DA and SNV-OPLS-DA models exhibited excellent classification performance in the discrimination of multiple pathogenic bacteria at different mixing proportions, achieving 100% accuracy in the external test set, but except for mixed samples of <em>Escherichia coli</em> and <em>Salmonella typhimurium</em>. Our method demonstrates the accurate capability of the SERS platform combined with chemometric methods in the discriminant analysis of multiple pathogenic bacteria at different species and mixing proportions, which provides novel insights for the synchronous analysis of multiple pathogenic bacteria.</p></div>","PeriodicalId":23656,"journal":{"name":"Vibrational Spectroscopy","volume":"132 ","pages":"Article 103692"},"PeriodicalIF":2.5,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141054874","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-01DOI: 10.1016/j.vibspec.2024.103688
Tamara Leskovar , Ivan Jerman , Irena Zupanič Pajnič
Molecular characteristics of skeletal remains were studied utilizing ATR-FTIR spectroscopy, focusing on comparisons between mature adult and immature non-adult skeletal elements. To cover the intra-skeletal variability, different types of bones were analysed. The objective was to identify significant differences between various skeletal elements of adults and non-adults. Additionally, the correlation between observed differences and DNA preservation was investigated. Despite exposure to taphonomic factors, findings indicate minimal diagenetic changes or a well-balanced alteration in mineral and collagen within bones. The identified differences primarily reflect functional and structural differences among various skeletal elements. Significant differences between adults and non-adults, or lack of it, is attributed to different paths of bone maturation from childhood to adulthood. High DNA preservation in non-adult petrous bones was attributed to the interplay between DNA and carbonates, both occupying hydroxyl sites in the lattice. Conversely, lower DNA content in other bones, especially non-adult bones, was correlated with high relative concentrations of collagen, in which DNA is less stable and more prone to degradation. This study highlights the importance of skeletal variation (inter, intra, developmental stage) when assessing the preservation state of the remains and choosing samples for further analyses such as DNA. For the first time, differences between mature adult and immature non-adult bones are included.
利用 ATR-FTIR 光谱对骨骼遗骸的分子特征进行了研究,重点是对成熟的成年人和未成年的非成年人骨骼元素进行比较。为了涵盖骨骼内部的差异,对不同类型的骨骼进行了分析。目的是确定成体与非成体各种骨骼元素之间的显著差异。此外,还研究了观察到的差异与 DNA 保存之间的相关性。尽管受到了岩石学因素的影响,但研究结果表明骨骼中的成岩变化极小,或者说矿物质和胶原蛋白的变化非常均衡。所发现的差异主要反映了各种骨骼元素之间的功能和结构差异。成年与非成年之间的显著差异或缺乏差异,归因于从童年到成年的不同骨骼成熟路径。非成人石质骨骼中的 DNA 保存率较高,这是由于 DNA 和碳酸盐之间的相互作用,两者都占据了晶格中的羟基位点。相反,其他骨骼(尤其是非成人骨骼)中较低的DNA含量与胶原蛋白的相对浓度较高有关,而胶原蛋白中的DNA稳定性较差,更容易降解。这项研究强调了在评估遗骸保存状况和选择样本进行 DNA 等进一步分析时,骨骼差异(骨骼间、骨骼内、发育阶段)的重要性。该研究首次纳入了成熟成年人和未成年非成年人骨骼之间的差异。
{"title":"Unveiling intra-skeletal variability in mature and immature human skeletal remains via ATR-FTIR spectroscopy","authors":"Tamara Leskovar , Ivan Jerman , Irena Zupanič Pajnič","doi":"10.1016/j.vibspec.2024.103688","DOIUrl":"https://doi.org/10.1016/j.vibspec.2024.103688","url":null,"abstract":"<div><p>Molecular characteristics of skeletal remains were studied utilizing ATR-FTIR spectroscopy, focusing on comparisons between mature adult and immature non-adult skeletal elements. To cover the intra-skeletal variability, different types of bones were analysed. The objective was to identify significant differences between various skeletal elements of adults and non-adults. Additionally, the correlation between observed differences and DNA preservation was investigated. Despite exposure to taphonomic factors, findings indicate minimal diagenetic changes or a well-balanced alteration in mineral and collagen within bones. The identified differences primarily reflect functional and structural differences among various skeletal elements. Significant differences between adults and non-adults, or lack of it, is attributed to different paths of bone maturation from childhood to adulthood. High DNA preservation in non-adult petrous bones was attributed to the interplay between DNA and carbonates, both occupying hydroxyl sites in the lattice. Conversely, lower DNA content in other bones, especially non-adult bones, was correlated with high relative concentrations of collagen, in which DNA is less stable and more prone to degradation. This study highlights the importance of skeletal variation (inter, intra, developmental stage) when assessing the preservation state of the remains and choosing samples for further analyses such as DNA. For the first time, differences between mature adult and immature non-adult bones are included.</p></div>","PeriodicalId":23656,"journal":{"name":"Vibrational Spectroscopy","volume":"132 ","pages":"Article 103688"},"PeriodicalIF":2.5,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0924203124000419/pdfft?md5=82e247653a0bd8e0fafb2501e85869d1&pid=1-s2.0-S0924203124000419-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140893556","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-01DOI: 10.1016/j.vibspec.2024.103690
Brent R. Westbrook , Ryan C. Fortenberry
The recent experimental identification of aminomethanol (NH2CH2OH) and its synthesis under simulated interstellar conditions suggests that it may be formed, and thus observable, in the interstellar medium. To aid in its possible detection, this work presents high-level theoretical, anharmonic vibrational and rotational spectroscopic data for the three lowest-energy conformers of NH2CH2OH. All three conformers fall within 0.80 kcal mol−1 of each other at the CCSD(T)-F12b/cc-pCVTZ-F12 level, with an anharmonic zero-point vibrational energy correction. Additionally, all three conformers are shown to have multiple vibrational frequencies with intensities greater than 100 km mol−1. The most notable of these are the symmetric O-C-N stretch of the lower-energy C1 conformer at 976.4 cm−1, the C-O stretch of the Cs conformer at 964.9 cm−1, and the antisymmetric O-C-N stretch of the higher-energy C1 conformer at 1099.0 cm−1. While much of the vibrational spectra of the three overlap, these features should help to separate them. Finally, all three conformers have non-zero dipole moments on the order of 1 D, suggesting that they may be observable by rotational spectroscopy, as well. In all cases, the computational data provided herein will help to facilitate future experimental and observational studies on this key molecule in the formation of extraterrestrial amino acids.
{"title":"Anharmonic rotational and vibrational spectroscopic constants of NH2CH2OH","authors":"Brent R. Westbrook , Ryan C. Fortenberry","doi":"10.1016/j.vibspec.2024.103690","DOIUrl":"10.1016/j.vibspec.2024.103690","url":null,"abstract":"<div><p>The recent experimental identification of aminomethanol (NH<sub>2</sub>CH<sub>2</sub>OH) and its synthesis under simulated interstellar conditions suggests that it may be formed, and thus observable, in the interstellar medium. To aid in its possible detection, this work presents high-level theoretical, anharmonic vibrational and rotational spectroscopic data for the three lowest-energy conformers of NH<sub>2</sub>CH<sub>2</sub>OH. All three conformers fall within 0.80 kcal mol<sup>−1</sup> of each other at the CCSD(T)-F12b/cc-pCVTZ-F12 level, with an anharmonic zero-point vibrational energy correction. Additionally, all three conformers are shown to have multiple vibrational frequencies with intensities greater than 100 km mol<sup>−1</sup>. The most notable of these are the symmetric O-C-N stretch of the lower-energy <em>C</em><sub>1</sub> conformer at 976.4 cm<sup>−1</sup>, the C-O stretch of the <em>C</em><sub><em>s</em></sub> conformer at 964.9 cm<sup>−1</sup>, and the antisymmetric O-C-N stretch of the higher-energy <em>C</em><sub>1</sub> conformer at 1099.0 cm<sup>−1</sup>. While much of the vibrational spectra of the three overlap, these features should help to separate them. Finally, all three conformers have non-zero dipole moments on the order of 1 D, suggesting that they may be observable by rotational spectroscopy, as well. In all cases, the computational data provided herein will help to facilitate future experimental and observational studies on this key molecule in the formation of extraterrestrial amino acids.</p></div>","PeriodicalId":23656,"journal":{"name":"Vibrational Spectroscopy","volume":"132 ","pages":"Article 103690"},"PeriodicalIF":2.5,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141032120","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-01DOI: 10.1016/j.vibspec.2024.103689
Weiping Xian , Zihan Wang , Lingyan Shi , Yiping Du , Gang Liu , Quanhong Ou , Xuan He
Energetic cocrystal materials are considered to be one of the important directions for the development of energetic materials, due to their high energy density and low sensitivity. However, there is still a lack of effective methods to carry out rapid structural and purity identification. Herein, we explored a method for rapid identification and identification of unknown components extracted from CL-20/MTNP and CL-20/HMX cocrystal processes based on Raman spectroscopy combined with principal component analysis (PCA). Thirty sets of cocrystal and 30 sets of mixed explosives were randomly selected as the training set and 10 sets each as the validation set. The principal components were extracted by dimensionality reduction of the collected Raman spectra using the principal component sub-featured clustering algorithm of chemometrics. The region identification structure formed by different principal components allows intelligent output of whether the sample was cocrystal or not. The results show that the cumulative contribution rate of the three principal components in the sample set was 98.7 %. The confidence ellipses of the validation set were all well distributed within the confidence ellipses of the training set. And the structure identification results of explosive cocrystals were output quickly, accurately and intelligently. Therefore, this method shows good potential application value in the rapid structural identification of other complex mixtures such as energetic even pharmaceutical cocrystals.
{"title":"Rapid identification of cocrystal components of explosives based on Raman spectroscopy and principal component analysis","authors":"Weiping Xian , Zihan Wang , Lingyan Shi , Yiping Du , Gang Liu , Quanhong Ou , Xuan He","doi":"10.1016/j.vibspec.2024.103689","DOIUrl":"10.1016/j.vibspec.2024.103689","url":null,"abstract":"<div><p>Energetic cocrystal materials are considered to be one of the important directions for the development of energetic materials, due to their high energy density and low sensitivity. However, there is still a lack of effective methods to carry out rapid structural and purity identification. Herein, we explored a method for rapid identification and identification of unknown components extracted from CL-20/MTNP and CL-20/HMX cocrystal processes based on Raman spectroscopy combined with principal component analysis (PCA). Thirty sets of cocrystal and 30 sets of mixed explosives were randomly selected as the training set and 10 sets each as the validation set. The principal components were extracted by dimensionality reduction of the collected Raman spectra using the principal component sub-featured clustering algorithm of chemometrics. The region identification structure formed by different principal components allows intelligent output of whether the sample was cocrystal or not. The results show that the cumulative contribution rate of the three principal components in the sample set was 98.7 %. The confidence ellipses of the validation set were all well distributed within the confidence ellipses of the training set. And the structure identification results of explosive cocrystals were output quickly, accurately and intelligently. Therefore, this method shows good potential application value in the rapid structural identification of other complex mixtures such as energetic even pharmaceutical cocrystals.</p></div>","PeriodicalId":23656,"journal":{"name":"Vibrational Spectroscopy","volume":"132 ","pages":"Article 103689"},"PeriodicalIF":2.5,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141047187","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-04-11DOI: 10.1016/j.vibspec.2024.103687
Yuanyuan Zhang , Gongji Wang , Xinggong Liang , Hao Wu , Zeyi Hao , Shuo Wu , Mingyan Deng , Run Chen , Kai Yu , Zuan Deng , Xin Wei , Kai Zhang , Zhenyuan Wang
In contemporary biomedicine, rapid diagnosis and accurate treatment of trauma is a top priority. The skin, as the organ with the most extensive contact with the outside world, is always inevitably and easily scarred when subjected to varying degrees of violence. However, when evanescent trauma occurs, the judgment of trauma becomes quite difficult, especially for closed trauma. Evanescent trauma mainly refers to the postmortem autolysis and corruption of body tissues, which lead to the failure to identify the traumatic state occurring before death using traditional detection techniques. Rapid and accurate identification of trauma and even trauma in the evanescent state plays an important role in the actual forensic examination. There have been few records on the development of quick and accurate models for the recognition and prediction of evanescent trauma on the skin. In this study, a predictive model for rapid identification of evanescent trauma in skin tissue was constructed by combining forensic spectroscopy and chemometrics analysis. Based on the mean spectra, principal component analysis (PCA) and corresponding loading plots, suggested that certain biomolecules, such as proteins and lipid molecules, might be the source of the difference between the control group and trauma group, and furthermore, there was a certain pattern of change of each molecule in the continuation of postmortem time. Partial least squares discriminant analysis (PLS-DA) was then applied to estimate the identification power of the training dataset and the testing dataset. The AUC values were 89.55 % and 94.67 %. In addition, the AUC values of the fresh-phase trauma recognition model were 100 % and 100 %, respectively, and the AUC values of the evanescent-phase trauma recognition model were respectively 92.52 % and 98.77 %. In summary, the combination of forensic spectroscopy and chemometrics completely applies their advantages of rapidity, accuracy, objectivity, high resolution and discriminative power to the study of evanescent trauma identification. Moreover, in judicial reality, the combination of spectroscopy and stoichiometry is also expected to make a huge difference in medical and criminal law applications.
{"title":"A forensic spectroscopic identification analysis on skin evanescent trauma by chemometrics","authors":"Yuanyuan Zhang , Gongji Wang , Xinggong Liang , Hao Wu , Zeyi Hao , Shuo Wu , Mingyan Deng , Run Chen , Kai Yu , Zuan Deng , Xin Wei , Kai Zhang , Zhenyuan Wang","doi":"10.1016/j.vibspec.2024.103687","DOIUrl":"https://doi.org/10.1016/j.vibspec.2024.103687","url":null,"abstract":"<div><p>In contemporary biomedicine, rapid diagnosis and accurate treatment of trauma is a top priority. The skin, as the organ with the most extensive contact with the outside world, is always inevitably and easily scarred when subjected to varying degrees of violence. However, when evanescent trauma occurs, the judgment of trauma becomes quite difficult, especially for closed trauma. Evanescent trauma mainly refers to the postmortem autolysis and corruption of body tissues, which lead to the failure to identify the traumatic state occurring before death using traditional detection techniques. Rapid and accurate identification of trauma and even trauma in the evanescent state plays an important role in the actual forensic examination. There have been few records on the development of quick and accurate models for the recognition and prediction of evanescent trauma on the skin. In this study, a predictive model for rapid identification of evanescent trauma in skin tissue was constructed by combining forensic spectroscopy and chemometrics analysis. Based on the mean spectra, principal component analysis (PCA) and corresponding loading plots, suggested that certain biomolecules, such as proteins and lipid molecules, might be the source of the difference between the control group and trauma group, and furthermore, there was a certain pattern of change of each molecule in the continuation of postmortem time. Partial least squares discriminant analysis (PLS-DA) was then applied to estimate the identification power of the training dataset and the testing dataset. The AUC values were 89.55 % and 94.67 %. In addition, the AUC values of the fresh-phase trauma recognition model were 100 % and 100 %, respectively, and the AUC values of the evanescent-phase trauma recognition model were respectively 92.52 % and 98.77 %. In summary, the combination of forensic spectroscopy and chemometrics completely applies their advantages of rapidity, accuracy, objectivity, high resolution and discriminative power to the study of evanescent trauma identification. Moreover, in judicial reality, the combination of spectroscopy and stoichiometry is also expected to make a huge difference in medical and criminal law applications.</p></div>","PeriodicalId":23656,"journal":{"name":"Vibrational Spectroscopy","volume":"132 ","pages":"Article 103687"},"PeriodicalIF":2.5,"publicationDate":"2024-04-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140621828","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}