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2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro最新文献

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Evaluation of multimodal imaging approaches for combined pre- and intraoperative imaging in oncology 多模式成像方法在肿瘤学术前术中联合成像中的评价
Pub Date : 2010-04-14 DOI: 10.1109/ISBI.2010.5490157
F. V. Leeuwen
New methods with higher sensitivity and specificity are required for effective image-guided surgery. We have developed a multimodal strategy that gives the same intraoperative detection accuracy as is currently achieved with common preoperative imaging procedures. Based on our own results with sentinel lymph node imaging and the use of bracketing marker seeds, the value of multimodal imaging approaches for a combined pre-and intraoperative application is evaluated.
有效的影像引导手术需要更高灵敏度和特异性的新方法。我们已经开发了一种多模式策略,可以提供与目前常用术前成像程序相同的术中检测准确性。根据我们自己的前哨淋巴结成像和使用支架标记种子的结果,评估多模式成像方法在术前和术中联合应用的价值。
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引用次数: 0
Detecting mutually-salient landmark pairs with MRF regularization 用MRF正则化方法检测相互显著的地标对
Pub Date : 2010-04-14 DOI: 10.1109/ISBI.2010.5490324
Yangming Ou, A. Besbes, M. Bilello, Mohamed Mansour, C. Davatzikos, N. Paragios
In this paper, we present a framework for extracting mutually-salient landmark pairs for registration. Traditional methods detect landmarks one-by-one and separately in two images. Therefore, the detected landmarks might inherit low dis-criminability and are not necessarily good for matching. In contrast, our method detects landmarks pair-by-pair across images, and those pairs are required to be mutually-salient, i.e., uniquely corresponding to each other. The second merit of our framework is that, instead of finding individually optimal correspondence, which is a local approach and could cause self-intersection of the resultant deformation, our framework adopts a Markov-random-field (MRF)-based spatial arrangement to select the globally optimal landmark pairs. In this way, the geometric consistency of the correspondences is maintained and the resultant deformations are relatively smooth and topology-preserving. Promising experimental validation through a radiologist's evaluation of the established correspondences is presented.
在本文中,我们提出了一个框架来提取相互显著的地标对进行配准。传统的方法是在两幅图像中逐个检测地标。因此,检测到的标记可能具有较低的可分辨性,并且不一定适合匹配。相比之下,我们的方法是在图像中成对地检测地标,这些对被要求是相互显著的,即彼此唯一对应。该框架的第二个优点是,我们的框架采用基于马尔可夫随机场(MRF)的空间排列来选择全局最优的地标对,而不是寻找单独的最优对应,这是一种局部方法,可能导致结果变形的自交。通过这种方式,保持了对应的几何一致性,并且生成的变形相对光滑且拓扑保持。有希望的实验验证,通过一个放射科医生的评估建立相应的提出。
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引用次数: 18
Multiphase level set for automated delineation of membrane-bound macromolecules 用于自动描述膜结合大分子的多相水平设置
Pub Date : 2010-04-14 DOI: 10.1109/ISBI.2010.5490389
Hang Chang, B. Parvin
Membrane-bound macromolecules play an important role in tissue architecture and cell-cell communication, and is regulated by almost one-third of the genome. At the optical scale, one group of membrane proteins expresses themselves as linear structures along the cell surface boundaries, while others are sequestered. This paper targets the former group, whose intensity distributions are often heterogeneous and may lack specificity. Segmentation of the membrane protein enables the quantitative assessment of localization for comparative analysis. We introduce a three-step process to (i) regularize the membrane signal through iterative tangential voting, (ii) constrain the location of surface proteins by nuclear features, and (iii) assign membrane proteins to individual cells through an application of multi-phase geodesic level-set. We have validated our method against a dataset of 200 images, and demonstrated that multiphase level set has a superior performance compared to gradient vector flow snake.
膜结合大分子在组织结构和细胞间通讯中起着重要作用,几乎三分之一的基因组都对其进行调控。在光学尺度上,一组膜蛋白表现为沿着细胞表面边界的线性结构,而其他的则是隔离的。本文的目标是前一类,其强度分布往往是异质的,可能缺乏特异性。膜蛋白的分割使定位的定量评估进行比较分析。我们引入了一个三步过程来(i)通过迭代切向投票使膜信号正则化,(ii)通过核特征约束表面蛋白的位置,以及(iii)通过应用多相测地水平集将膜蛋白分配给单个细胞。我们在200张图像的数据集上验证了我们的方法,并证明了多相水平集与梯度向量流蛇相比具有更好的性能。
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引用次数: 8
Motion correction in Positron Emission Tomography considering Partial Volume Effects in optical flow estimation 考虑光流估计中部分体积效应的正电子发射层析成像运动校正
Pub Date : 2010-04-14 DOI: 10.1109/ISBI.2010.5490218
Daniel Tenbrinck, M. Dawood, F. Gigengack, M. Fieseler, Xiaoyi Jiang, Klaus Schiifers
Motion correction in Positron Emission Tomography (PET) using optical flow estimation can lead to image artifacts due to Partial Volume Effects (PVE). These artifacts appear especially in cardiac gated PET images and cause blurred edges in the averaged gates. In this paper we propose a new method to motion correct PET images considering the PVE during optical flow estimation. For this purpose we introduce a local intensity correction algorithm and combine it with the optical flow computation in an iterative scheme. The results of our approach show a qualitative and quantitative improvement of the motion corrected PET gates in examinations of both human patients and laboratory mice for pre-clinical research.
利用光流估计进行正电子发射断层扫描(PET)的运动校正会由于部分体积效应(PVE)而导致图像伪影。这些伪影尤其出现在心脏门控PET图像中,并导致平均门的边缘模糊。本文提出了一种考虑光流估计中PVE的运动校正PET图像的新方法。为此,我们引入了一种局部强度校正算法,并将其与光流的迭代计算相结合。我们的方法的结果显示,定性和定量的改进运动校正PET门在检查人类患者和实验室小鼠的临床前研究。
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引用次数: 3
Chemical profiling of the plant cellwall through Raman microspectroscopy 植物细胞壁的拉曼显微光谱分析
Pub Date : 2010-04-14 DOI: 10.1109/isbi.2010.5490228
Ju Han, Seema Singh, Lan Sun, B. Simmons, M. Auer, B. Parvin
This paper presents a computational framework for chemical profiling of the plant cell wall through the Raman spectroscopy. The system enables query of known spectral signatures and clustering of spectral data based on intrinsic properties. As a result, presence and relative concentration of specific chemical bonds can be quantified. The primary contribution of this paper is in representation of raman profile in terms of fluorescence background and multiscale peak detection at each grid point (voxel). Such a representation allows efficient spatial segmentation based on the coupling between high-level salient properties and low-level symbolic representation at each voxel. The high-level salient properties refer to preferred peaks and their attributes for the entire image. The low-level symbolic representations are based on fluorescence background, spectral peak locations, and their attributes. We present results on a corn stover tissue section that is imaged through Raman microscopy, and the results are consistent with the literature. In addition, automatic clustering indicates several distinct layers of the cell walls with different spectral signatures.
本文提出了一种利用拉曼光谱对植物细胞壁进行化学分析的计算框架。该系统可以查询已知的光谱特征,并根据光谱数据的内在属性进行聚类。因此,特定化学键的存在和相对浓度可以被量化。本文的主要贡献是根据荧光背景和每个网格点(体素)的多尺度峰值检测来表示拉曼轮廓。这种表示允许基于每个体素的高级显著属性和低级符号表示之间的耦合进行有效的空间分割。高级显著属性指的是整个图像的首选峰值及其属性。低级符号表示基于荧光背景、光谱峰位置及其属性。我们提出了玉米秸秆组织切片的结果,通过拉曼显微镜成像,结果与文献一致。此外,自动聚类表明了具有不同光谱特征的细胞壁的几个不同层。
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引用次数: 1
A priori guided reconstruction for FDOT using mixed norms 利用混合范数先验指导FDOT重建
Pub Date : 2010-04-14 DOI: 10.1109/ISBI.2010.5490082
Jean-Charles Baritaux, M. Unser
We propose new soft-prior approach for incorporating structural a priori in FDOT reconstruction. The technique is a non-linear regularization scheme based on the penalization of the (2, 1)-mixed norm. We solve the numerical reconstruction problem with an iterative thresholding-type algorithm. We present simulation results that demonstrate an improvement both in resolution and fluorophore concentration estimation, compared to prior-free approaches.
我们提出了一种新的软先验方法来结合结构先验在FDOT重建中。该技术是一种基于(2,1)混合范数惩罚的非线性正则化方案。我们用迭代阈值型算法解决了数值重建问题。我们提出的模拟结果表明,与无先验方法相比,在分辨率和荧光团浓度估计方面都有改进。
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引用次数: 4
An MRI/CT-based cardiac electroanatomical mapping system with scattered data interpolation algorithm 基于分散数据插值算法的MRI/ ct心脏电解剖制图系统
Pub Date : 2010-04-14 DOI: 10.1109/ISBI.2010.5490308
G. Gao, Phani Chinchapatnam, M. Wright, A. Arujuna, M. Ginks, C. Rinaldi, K. Rhode
In this paper we are proposing an MRI/CT-guided cardiac electroanatomical mapping system, EpreMap. EpreMap was developed as an extension to the guidance system developed at King's College London for cardiac electrophysiology procedures. This platform allows for both the registration of MRI/CT anatomical data to X-ray fluoroscopy and the determination of the catheter positions. EpreMap is a contact mapping system. By using a radial basis function (RBF) based scattered data interpolation algorithm, EpreMap can create a cardiac activation map for a whole chamber starting from five sampling points. The activation map is updated with every new measurement. Offline studies showed that cardiac activation maps created by using EpreMap were highly correlated with the maps created by using a non-contact mapping system. EpreMap was used in three clinical cases. The clinical studies proved the workflow of EpreMap was valid in the clinical environment. For one clinical case, the result of EpreMap was validated against a non-contact mapping system. Clinically significant regions identified by using the two mapping systems were strongly correlated.
在本文中,我们提出了一个MRI/ ct引导的心脏电解剖定位系统,EpreMap。EpreMap是作为伦敦国王学院为心脏电生理程序开发的引导系统的扩展而开发的。该平台允许将MRI/CT解剖数据注册到x射线透视和确定导管位置。EpreMap是一个联系人映射系统。EpreMap采用基于径向基函数(RBF)的离散数据插值算法,从5个采样点出发,绘制出整个腔室的心脏活动图。激活图会随着每次新的测量而更新。离线研究表明,使用EpreMap绘制的心脏活动图与使用非接触式制图系统绘制的地图高度相关。EpreMap应用于3例临床病例。临床研究证明EpreMap工作流程在临床环境下是有效的。对于一个临床病例,EpreMap的结果与非接触式制图系统进行了验证。通过使用两种制图系统确定的临床显著区域是强相关的。
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引用次数: 6
Comparison of magnetic resonance electrical impedance tomography (MREIT) reconstruction algorithms 磁共振电阻抗断层成像(MREIT)重建算法的比较
Pub Date : 2010-04-14 DOI: 10.1109/ISBI.2010.5490080
B. M. Eyüboğlu, V. Arpinar, R. Boyacioglu, E. Değirmenci, G. Eker
Several algorithms have been proposed for image reconstruction in MREIT. These algorithms reconstruct conductivity distribution either directly from magnetic flux density measurements or from reconstructed current density distribution. In this study, performance of all major algorithms are evaluated and compared on a common platform, in terms of their reconstruction error, reconstruction time, perceptual image quality, immunity against measurement noise, required electrode size. J-Substitution (JS) and Hybrid J-Substitution algorithms have the best reconstruction accuracy but they are among the slowest. Another current density based algorithm, Equipotential Projection (EPP) algorithm along with magnetic flux density based Bz Sensitivity (BzS) algorithm has moderate reconstruction accuracy. BzS algorithm is the fastest.
针对MREIT中的图像重建,已经提出了几种算法。这些算法可以直接从磁通密度测量或从重建的电流密度分布重建电导率分布。在本研究中,所有主要算法的性能在一个共同的平台上进行了评估和比较,包括重建误差、重建时间、感知图像质量、对测量噪声的抗扰度、所需的电极尺寸。J-Substitution (JS)和Hybrid J-Substitution算法具有最好的重建精度,但它们是最慢的。另一种基于电流密度的算法,等电位投影(EPP)算法和基于磁通密度的Bz灵敏度(BzS)算法具有中等的重建精度。BzS算法是最快的。
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引用次数: 4
Correction of distance-dependent blurring in projection data for fully three-dimensional electron microscopic reconstruction 全三维电子显微镜重建中投影数据中距离相关模糊的校正
Pub Date : 2010-04-14 DOI: 10.1109/ISBI.2010.5490189
Joanna Klukowska, G. Herman, I. Kazantsev
We propose a method of correction for distance-dependent blurring, which is one of the limiting factors to achieving higher resolution in 3D reconstructions of biological specimens from 2D projections obtained by an electron microscope. Our proposed correction is based on the frequency-distance relation that has been used successfully in correction of a similar problem in single photon emission tomography and has been suggested for electron microscopy data obtained by rotating a sample around a single axis. We extend these approaches to electron microscopy data that are obtained from arbitrary directions. We develop the theoretical background for a correction method that results in an estimate of a true projection data set, which then can be used to obtain a 3D reconstruction by any currently existing algorithm.
我们提出了一种校正距离相关模糊的方法,这是电子显微镜获得的二维投影生物标本三维重建中实现更高分辨率的限制因素之一。我们提出的校正基于频率-距离关系,该关系已成功地用于校正单光子发射断层扫描中的类似问题,并已建议用于通过绕单轴旋转样品获得的电子显微镜数据。我们将这些方法扩展到从任意方向获得的电子显微镜数据。我们开发了一种校正方法的理论背景,该方法可以对真实投影数据集进行估计,然后可以使用任何现有算法来获得3D重建。
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引用次数: 1
Multi-DoF probe trajectory reconstruction with local sensors for 2D-to-3D ultrasound 基于局部传感器的二维到三维超声多自由度探头轨迹重建
Pub Date : 2010-04-14 DOI: 10.1109/ISBI.2010.5490347
Philipp J. Stolka, Hyun-Jae Kang, M. Choti, E. Boctor
Handheld 2D ultrasound is very useful for intra-operative imaging, but requires some reconstruction effort in order to create 3D US volumes, unless one is using large and expensive 3D US probes. Unlike common probe tracking approaches involving either global or local tracking algorithms (suffering from jitter and complexity or from drift), we propose to use a combination of local sensors to reconstruct the probe trajectory with multiple degrees of freedom. The presented sensors are very low-cost- optical mice and a Wii Remote - yet enable flexible 3D US acquisition with no global tracking overhead. The resulting trajectories are then used as input for a dynamically expanding, pixel-nearest-neighbor 3D US volume reconstruction.
手持式二维超声对术中成像非常有用,但需要一些重建工作才能创建三维超声体积,除非使用大型和昂贵的三维超声探头。与涉及全局或局部跟踪算法(受抖动和复杂性或漂移的影响)的常见探针跟踪方法不同,我们建议使用局部传感器的组合来重建具有多个自由度的探针轨迹。所展示的传感器成本非常低——光学鼠标和Wii遥控器——但可以实现灵活的3D美国采集,而无需全球跟踪开销。然后将得到的轨迹用作动态扩展的、像素最近邻的3D US体重建的输入。
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引用次数: 17
期刊
2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro
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