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2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro最新文献

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Two tissue compartment model in DCE-MRI: A bayesian approach DCE-MRI双组织室模型:贝叶斯方法
Pub Date : 2010-04-14 DOI: 10.1109/ISBI.2010.5490074
J. Kärcher, Volker J Schmid
In this paper, we propose a compartment model with two interstitial space compartments for the quantitative description of the contrast medium kinetics in dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI). The model accounts for heterogeneity of contrast medium uptake behavior within voxels and thus more appropriately describes the uptake behavior in malignant tissue, especially at tumor margins. The posterior distribution obtained with a Bayesian approach provides valuable information on model fit and complexity as well as criteria for model selection. We propose a model selection technique to choose between the proposed two compartment model and the standard one compartment model per voxel. Results are evaluated for simulated and in vivo data.
在本文中,我们提出了一个具有两个间隙空间的隔室模型,用于动态对比增强磁共振成像(DCE-MRI)中造影剂动力学的定量描述。该模型解释了体素内造影剂摄取行为的异质性,因此更恰当地描述了恶性组织,特别是肿瘤边缘的摄取行为。用贝叶斯方法得到的后验分布为模型拟合和复杂度提供了有价值的信息,也为模型选择提供了标准。我们提出了一种模型选择技术,在每体素的两室模型和标准一室模型之间进行选择。结果评估模拟和体内数据。
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引用次数: 9
Exemplar-based segmentation of pigmented skin lesions from dermoscopy images 基于样本的皮肤镜图像中色素皮损的分割
Pub Date : 2010-04-14 DOI: 10.1109/ISBI.2010.5490372
Howard Zhou, James M. Rehg, Mei Chen
Automated segmentation of pigmented skin lesions (PSLs) from dermoscopy images is an important step for computer-aided diagnosis of skin cancer. The segmentation task involves classifying each image pixel as either lesion or skin. It is challenging because lesion and skin can often have similar appearance. We present a novel exemplar-based algorithm for lesion segmentation which leverages the context provided by a global color model to retrieve annotated examples which are most similar to a given query image. Pixel labels are generated through a probabilistic voting rule and smoothed using a dermoscopy-specific spatial prior. We compare our method to three competing techniques using a large dataset of dermoscopy images with hand-segmented ground truth,We show that our exemplar-based approach yields significantly better segmentations and is computationally efficient.
从皮肤镜图像中自动分割色素皮肤病变(psl)是计算机辅助诊断皮肤癌的重要步骤。分割任务包括将每个图像像素分类为病变或皮肤。这是具有挑战性的,因为病变和皮肤通常具有相似的外观。我们提出了一种新的基于样本的病变分割算法,该算法利用全局颜色模型提供的上下文来检索与给定查询图像最相似的注释示例。像素标签通过概率投票规则生成,并使用特定于皮肤镜的空间先验进行平滑。我们将我们的方法与三种竞争技术进行了比较,这些技术使用了大量的皮肤镜图像数据集和手工分割的地面真相。我们表明,我们的基于样本的方法产生了更好的分割效果,并且计算效率很高。
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引用次数: 22
Retrieval and classification of ultrasound images of ovarian cysts combining texture features and histogram moments 结合纹理特征和直方图矩的卵巢囊肿超声图像检索与分类
Pub Date : 2010-04-14 DOI: 10.1109/ISBI.2010.5490352
Abu Sayeed Md. Sohail, M. Rahman, P. Bhattacharya, Srinivasan Krishnamurthy, S. Mudur
This paper presents an effective solution for content-based retrieval and classification of ultrasound medical images representing three types of ovarian cysts: Simple Cyst, Endometrioma, and Teratoma. Our proposed solution comprises of the followings: extraction of low level ultrasound image features combining histogram moments with Gray Level Co-Occurrence Matrix (GLCM) based statistical texture descriptors, image retrieval using a similarity model based on Gower's similarity coefficient which measures the relevance between the query image and the target images, and use of multiclass Support Vector Machine (SVM) for classifying the low level ultrasound image features into their corresponding high level categories. Efficiency of the above solution for ultrasound medical image retrieval and classification has been evaluated using an inprogress database, presently consisting of 478 ultrasound ovarian images. Performance-wise, in retrieval of ultrasound images, our proposed solution has demonstrated above 77% and 75% of average precision considering the first 20 and 40 retrieved results respectively, and an average classification accuracy of 86.90%.
针对单纯性囊肿、子宫内膜异位瘤和畸胎瘤这三种类型的卵巢囊肿,提出了一种基于内容的超声医学图像检索和分类的有效解决方案。我们建议的解决方案包括以下内容:结合直方图矩和基于灰度共生矩阵(GLCM)的统计纹理描述符提取低水平超声图像特征,使用基于Gower相似系数的相似度模型(衡量查询图像与目标图像之间的相关性)进行图像检索,并使用多类支持向量机(SVM)将低水平超声图像特征分类到相应的高级别类别。使用一个正在开发的数据库(目前包含478张卵巢超声图像)对上述方案进行超声医学图像检索和分类的效率进行了评估。在性能方面,在超声图像检索中,我们提出的方案分别在前20和40个检索结果中显示了77%和75%以上的平均精度,平均分类准确率为86.90%。
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引用次数: 23
Discriminative sparse representations for cervigram image segmentation 判别稀疏表示用于图像分割
Pub Date : 2010-04-14 DOI: 10.1109/ISBI.2010.5490397
Shaoting Zhang, Junzhou Huang, Dimitris N. Metaxas, Wei Wang, Xiaolei Huang
This paper presents an algorithm using discriminative sparse representations to segment tissues in optical images of the uterine cervix. Because of the large variations in the image appearance caused by the changing of illumination and specular reflection, the different classes of color and texture features in optical images are often overlapped with each other. Using sparse representations they can be transformed to higher dimension with sparse constraints and become more linearly separated. Different from the previous reconstructive sparse representation, the discriminative method considers positive and negative samples simultaneously, which means that these generated dictionaries can be discriminative and perform better for their own classes but worse for the others. New data can be reconstructed from its sparse representations and positive and/or negative dictionaries. Classification can be achieved based on comparing the reconstructive errors. In the experiments we used our method to automatically segment the biomarker AcetoWhite (AW) regions in an archive of the uterine cervix. Compared with the other general methods including SVM, nearest neighbor and reconstructive sparse representations, our approach showed higher sensitivity and specificity.
本文提出了一种利用判别稀疏表示对子宫颈光学图像进行组织分割的算法。由于光照和镜面反射的变化导致图像外观变化较大,光学图像中不同类别的颜色和纹理特征往往相互重叠。使用稀疏表示,它们可以在稀疏约束下转换到更高的维度,并变得更加线性分离。与之前的重构稀疏表示不同,判别方法同时考虑正样本和负样本,这意味着这些生成的字典可以是判别的,并且对自己的类表现更好,但对其他类表现更差。新数据可以从其稀疏表示和正字典和/或负字典中重建。通过比较重建误差可以实现分类。在实验中,我们使用我们的方法在子宫颈档案中自动分割生物标志物AcetoWhite (AW)区域。与支持向量机、最近邻和重构稀疏表示等常用方法相比,该方法具有更高的灵敏度和特异性。
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引用次数: 30
Parametric regression of 3D medical images through the exploration of non-parametric regression models 通过探索非参数回归模型对三维医学图像进行参数回归
Pub Date : 2010-04-14 DOI: 10.1109/ISBI.2010.5490313
C. Seiler, X. Pennec, M. Reyes
Currently there is an increase usage of CT-based bone diagnosis because low-radiation and cost-effective 2D imaging modalities do not provide the necessary 3D information for bone diagnosis. The fundamental objective of our work is to build a model connecting 2D X-ray information to 3D CT information through regression. As a first step we propose an univariate non-parametric regression on individual predictor variables to explore the non-linearity of the data. To later combine these univariate models we then replace them with parametric models. We examine two predictors, shaft length and caput collum diaphysis angle on a database of 182 CT images of femurs. We show that for each predictor it is possible to describe 99% of the variance through a simple up to second order parametric model. These findings will allow us to extend to the multivariate case in the future.
目前,基于ct的骨诊断的使用越来越多,因为低辐射和低成本的2D成像模式不能提供骨诊断所需的3D信息。我们工作的基本目标是通过回归建立一个连接二维x射线信息和三维CT信息的模型。作为第一步,我们提出了对单个预测变量的单变量非参数回归来探索数据的非线性。为了以后结合这些单变量模型,我们用参数模型代替它们。我们在182个股骨CT图像的数据库中检查了两个预测因子,轴长和头柱骨干角。我们表明,对于每个预测器,可以通过一个简单的二阶参数模型来描述99%的方差。这些发现将使我们能够在未来扩展到多变量情况。
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引用次数: 2
Automatic Inferior Vena Cava segmentation in contrast-enhanced CT volumes CT增强扫描自动下腔静脉分割
Pub Date : 2010-04-14 DOI: 10.1109/ISBI.2010.5490321
T. Lefèvre, B. Mory, R. Ardon, Javier Sanchez-Castro, A. Yezzi
This paper presents a novel robust automatic method for the segmentation of the Inferior Vena Cava (IVC) in the proximity of the liver. In clinical diagnosis and surgery planning, IVC segmentation is essential since it strongly impacts both liver volumetry accuracy and vascularity analysis. Given the anatomical variability, the lack of clear boundaries and complexity of the surrounding structures along the IVC, its segmentation remains a difficult and open problem. To cope with such challenging conditions, we developed an implicit representation of a generalized cylinder and optimized a local region-based criterion under dedicated anatomical constraints. Our method was tested on a dataset of 20 contrast-enhanced CT scans, achieving 80% success rate in fully automatic mode. The remaining cases needed minimal user input (one point) to reach 95% success under radiology expert criteria.
本文提出了一种新的鲁棒自动分割下腔静脉(IVC)的方法。在临床诊断和手术计划中,下腔静脉分割是必不可少的,因为它强烈影响肝脏容量测量的准确性和血管分析。由于下颌骨的解剖变异性、缺乏清晰的边界和周围结构的复杂性,下颌骨的分割仍然是一个困难和开放的问题。为了应对这种具有挑战性的条件,我们开发了广义圆柱体的隐式表示,并在专用解剖约束下优化了基于局部区域的标准。我们的方法在20个对比增强CT扫描数据集上进行了测试,在全自动模式下成功率达到80%。其余病例需要最少的用户输入(1分),在放射学专家标准下达到95%的成功率。
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引用次数: 5
Detection of hematopoietic stem cells in microscopy images using a bank of ring filters 利用一组环形滤光片检测显微镜图像中的造血干细胞
Pub Date : 2010-04-14 DOI: 10.1109/ISBI.2010.5490394
Sungeun Eom, Ryoma Bise, T. Kanade
We present a method for robustly detecting hematopoietic stem cells (HSCs) in phase contrast microscopy images. HSCs appear to be easy to detect since they typically appear as round objects. However, when HSCs are touching and overlapping, showing the variations in shape and appearance, standard pattern detection methods, such as Hough transform and correlation, do not perform well. The proposed method exploits the output pattern of a ring filter bank applied to the input image, which consists of a series of matched filters with multiple-radius ring-shaped templates. By modeling the profile of each filter response as a quadratic surface, we explore the variations of peak curvatures and peak values of the filter responses when the ring radius varies. The method is validated on thousands of phase contrast microscopy images with different acquisition settings, achieving 96.5% precision and 94.4% recall.
我们提出了一种在相衬显微镜图像中稳健检测造血干细胞(hsc)的方法。hsc似乎很容易检测到,因为它们通常呈现为圆形物体。然而,当hsc相互接触和重叠,表现出形状和外观的变化时,标准的模式检测方法,如霍夫变换和相关,表现不佳。该方法利用应用于输入图像的环形滤波器组的输出模式,该滤波器组由一系列具有多半径环状模板的匹配滤波器组成。通过将每个滤波器响应的轮廓建模为一个二次曲面,我们探索了当环半径变化时滤波器响应的峰值曲率和峰值的变化。该方法在数千张不同采集设置的相差显微镜图像上进行了验证,准确率为96.5%,召回率为94.4%。
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引用次数: 17
3D reconstruction of both shape and Bone Mineral Density distribution of the femur from DXA images DXA图像对股骨形状和骨密度分布的三维重建
Pub Date : 2010-04-14 DOI: 10.1109/ISBI.2010.5490310
L. Humbert, T. Whitmarsh, M. D. Craene, L. D. R. Barquero, K. Fritscher, R. Schubert, F. Eckstein, T. Link, Alejandro F Frangi
The diagnosis of osteoporosis and the prevention of femur fractures is a major challenge for our society. However, the diagnosis performed in clinical routine from Dual Energy X-ray Absorptiometry (DXA) images is limited. This paper proposes a 3D reconstruction method of both the shape and the Bone Mineral Density (BMD) distribution of the proximal femur from routinely used DXA images. The reconstruction accuracy that can be obtained from single-view and multi-view DXA devices was assessed. This evaluation, from 20 bone specimens and simulated DXA images, highlighted a mean shape accuracy of 1.3mm and a BMD accuracy of 4.4% from a single-view DXA image. A multi-view configuration with 2 views (frontal-sagittal) appeared as a good compromise (mean shape accuracy of 0.9mm and BMD accuracy of 3.2%). We are currently using this method for in vivo clinical studies in order to improve the diagnosis of osteoporosis and the prevention of femur fractures.
骨质疏松症的诊断和股骨骨折的预防是我们社会面临的主要挑战。然而,临床常规双能x线吸收仪(DXA)图像的诊断是有限的。本文提出了一种基于常规DXA图像的股骨近端形状和骨密度(BMD)分布的三维重建方法。评估了单视图和多视图DXA设备可以获得的重建精度。该评估来自20个骨标本和模拟DXA图像,突出显示单视图DXA图像的平均形状精度为1.3mm, BMD精度为4.4%。2个视图(额矢状面)的多视图配置似乎是一个很好的折衷(平均形状精度为0.9mm, BMD精度为3.2%)。我们目前正在使用这种方法进行体内临床研究,以提高骨质疏松症的诊断和股骨骨折的预防。
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引用次数: 21
A detection-based framework for the analysis of recycling in TIRF microscopy TIRF显微镜中回收分析的基于检测的框架
Pub Date : 2010-04-14 DOI: 10.1109/ISBI.2010.5490230
A. Chessel, B. Cinquin, S. Bardin, J. Boulanger, J. Salamero, C. Kervrann
Endocytosis/recycling and exocytosis aremechanisms conserved through evolution allowing cells to communicate with their external medium. In order to study these dynamic processes, the present work proposes a patch-based method for detecting recycling or exocytotic events at the Plasma membrane in fast TIRF microscopy combined with the computation of normalized temporal representations of those events. Evaluation, performed on TIRF sequences showing Transferrin receptor (TfR) recycling, validates a high detection rate fully compatible with an automatic data extraction and analysis of the plasma membrane recycling process.
内吞/再循环和胞吐是通过进化保守的机制,允许细胞与外部介质通信。为了研究这些动态过程,本研究提出了一种基于补丁的方法,用于在快速TIRF显微镜下检测质膜上的回收或胞吐事件,并结合这些事件的规范化时间表征的计算。对显示转铁蛋白受体(TfR)回收的TIRF序列进行评估,验证了高检出率,与质膜回收过程的自动数据提取和分析完全兼容。
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引用次数: 5
Xfct inversion by generalized ridge functions 广义脊函数的xfact反演
Pub Date : 2010-04-14 DOI: 10.1109/ISBI.2010.5490060
E. Miqueles, A. R. Pierro
X-Ray fluorescence computed tomography (xfct) aims at reconstructing fluorescence density from emission data given the measured x-ray attenuation. In this paper, inspired by the classical results from Logan & Shepp [3], we briefly discuss the existence of generalized ridge functions providing the minimal norm solution of the inverse problem. An algorithm to construct such functions is presented, based on results from Kazantsev [4]. Numerical results are also shown, with real and simulated data.
x射线荧光计算机断层扫描(xfct)的目的是根据给定测量的x射线衰减的发射数据重建荧光密度。在本文中,受Logan & Shepp[3]经典结果的启发,我们简要讨论了提供逆问题最小范数解的广义脊函数的存在性。基于Kazantsev[4]的结果,提出了一种构造此类函数的算法。给出了数值计算结果,并结合了实际数据和模拟数据。
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引用次数: 0
期刊
2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro
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