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2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro最新文献

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Chemical profiling of the plant cellwall through Raman microspectroscopy 植物细胞壁的拉曼显微光谱分析
Pub Date : 2010-04-14 DOI: 10.1109/isbi.2010.5490228
Ju Han, Seema Singh, Lan Sun, B. Simmons, M. Auer, B. Parvin
This paper presents a computational framework for chemical profiling of the plant cell wall through the Raman spectroscopy. The system enables query of known spectral signatures and clustering of spectral data based on intrinsic properties. As a result, presence and relative concentration of specific chemical bonds can be quantified. The primary contribution of this paper is in representation of raman profile in terms of fluorescence background and multiscale peak detection at each grid point (voxel). Such a representation allows efficient spatial segmentation based on the coupling between high-level salient properties and low-level symbolic representation at each voxel. The high-level salient properties refer to preferred peaks and their attributes for the entire image. The low-level symbolic representations are based on fluorescence background, spectral peak locations, and their attributes. We present results on a corn stover tissue section that is imaged through Raman microscopy, and the results are consistent with the literature. In addition, automatic clustering indicates several distinct layers of the cell walls with different spectral signatures.
本文提出了一种利用拉曼光谱对植物细胞壁进行化学分析的计算框架。该系统可以查询已知的光谱特征,并根据光谱数据的内在属性进行聚类。因此,特定化学键的存在和相对浓度可以被量化。本文的主要贡献是根据荧光背景和每个网格点(体素)的多尺度峰值检测来表示拉曼轮廓。这种表示允许基于每个体素的高级显著属性和低级符号表示之间的耦合进行有效的空间分割。高级显著属性指的是整个图像的首选峰值及其属性。低级符号表示基于荧光背景、光谱峰位置及其属性。我们提出了玉米秸秆组织切片的结果,通过拉曼显微镜成像,结果与文献一致。此外,自动聚类表明了具有不同光谱特征的细胞壁的几个不同层。
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引用次数: 1
Motion correction in Positron Emission Tomography considering Partial Volume Effects in optical flow estimation 考虑光流估计中部分体积效应的正电子发射层析成像运动校正
Pub Date : 2010-04-14 DOI: 10.1109/ISBI.2010.5490218
Daniel Tenbrinck, M. Dawood, F. Gigengack, M. Fieseler, Xiaoyi Jiang, Klaus Schiifers
Motion correction in Positron Emission Tomography (PET) using optical flow estimation can lead to image artifacts due to Partial Volume Effects (PVE). These artifacts appear especially in cardiac gated PET images and cause blurred edges in the averaged gates. In this paper we propose a new method to motion correct PET images considering the PVE during optical flow estimation. For this purpose we introduce a local intensity correction algorithm and combine it with the optical flow computation in an iterative scheme. The results of our approach show a qualitative and quantitative improvement of the motion corrected PET gates in examinations of both human patients and laboratory mice for pre-clinical research.
利用光流估计进行正电子发射断层扫描(PET)的运动校正会由于部分体积效应(PVE)而导致图像伪影。这些伪影尤其出现在心脏门控PET图像中,并导致平均门的边缘模糊。本文提出了一种考虑光流估计中PVE的运动校正PET图像的新方法。为此,我们引入了一种局部强度校正算法,并将其与光流的迭代计算相结合。我们的方法的结果显示,定性和定量的改进运动校正PET门在检查人类患者和实验室小鼠的临床前研究。
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引用次数: 3
Advancing the technology and applications of surgical fluorescence imaging with targeted fluorochromes 推进靶向荧光染料外科荧光成像技术及其应用
Pub Date : 2010-04-14 DOI: 10.1109/ISBI.2010.5490160
G. Themelis, Athanasios Sarantopoulos, N. Harlaar, G. M. Dam, V. Ntziachristos
A new concept aiming to improve surgical outcome by providing real-time surgical feedback on tumor margin delineation is presented. We are using a novel multispectral imaging system for real time measurement of fluorescence probes with molecular specificity to tumor biomarkers. Mice bearing xenograft tumors were used to simulate surgical operations of tumor excision guided by real time fluorescence imaging. Bioluminescence imaging and histopathology were used as gold standards to confirm the in-vivo findings. Results demonstrate the capability of the method to identify tumor negative margins with high specificity and provide real time feedback to the surgeon.
提出了一种新的概念,旨在通过提供实时手术反馈肿瘤边缘划定改善手术结果。我们正在使用一种新型的多光谱成像系统来实时测量具有肿瘤生物标志物分子特异性的荧光探针。采用实时荧光成像技术模拟移植瘤小鼠的手术切除过程。用生物发光成像和组织病理学作为金标准来证实体内的发现。结果表明,该方法能够以高特异性识别肿瘤阴性边缘,并向外科医生提供实时反馈。
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引用次数: 0
Multi-DoF probe trajectory reconstruction with local sensors for 2D-to-3D ultrasound 基于局部传感器的二维到三维超声多自由度探头轨迹重建
Pub Date : 2010-04-14 DOI: 10.1109/ISBI.2010.5490347
Philipp J. Stolka, Hyun-Jae Kang, M. Choti, E. Boctor
Handheld 2D ultrasound is very useful for intra-operative imaging, but requires some reconstruction effort in order to create 3D US volumes, unless one is using large and expensive 3D US probes. Unlike common probe tracking approaches involving either global or local tracking algorithms (suffering from jitter and complexity or from drift), we propose to use a combination of local sensors to reconstruct the probe trajectory with multiple degrees of freedom. The presented sensors are very low-cost- optical mice and a Wii Remote - yet enable flexible 3D US acquisition with no global tracking overhead. The resulting trajectories are then used as input for a dynamically expanding, pixel-nearest-neighbor 3D US volume reconstruction.
手持式二维超声对术中成像非常有用,但需要一些重建工作才能创建三维超声体积,除非使用大型和昂贵的三维超声探头。与涉及全局或局部跟踪算法(受抖动和复杂性或漂移的影响)的常见探针跟踪方法不同,我们建议使用局部传感器的组合来重建具有多个自由度的探针轨迹。所展示的传感器成本非常低——光学鼠标和Wii遥控器——但可以实现灵活的3D美国采集,而无需全球跟踪开销。然后将得到的轨迹用作动态扩展的、像素最近邻的3D US体重建的输入。
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引用次数: 17
Fractal modelling and analysis of flow-field images 流场图像的分形建模与分析
Pub Date : 2010-04-14 DOI: 10.1109/ISBI.2010.5490416
P. D. Tafti, R. Delgado-Gonzalo, A. Stalder, M. Unser
We introduce stochastic models for flow fields with parameters that dictate the scale-dependent (self-similar) character of the field and control the balance between its rotational vs compressive behaviour. The development of our models is motivated by the availability of imaging modalities that measure flow vector fields (flow-sensitive MRI and Doppler ultrasound). To study such data, we formulate estimators of the model parameters, and use them to quantify the Hurst exponent and directional properties of synthetic and real-world flow fields (measured by means of phase-contrast MRI) in 3D.
我们引入了流场的随机模型,其参数决定了场的尺度依赖(自相似)特征,并控制了其旋转与压缩行为之间的平衡。我们的模型的发展是由测量流矢量场的成像模式(流敏感MRI和多普勒超声)的可用性所推动的。为了研究这些数据,我们制定了模型参数的估计器,并使用它们来量化合成流场和现实世界流场的Hurst指数和定向特性(通过相对比MRI测量)。
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引用次数: 4
Sufficient condition for local invertibility of spatio-temporal 4D B-spline deformations 时空四维b样条变形局部可逆性的充分条件
Pub Date : 2010-04-14 DOI: 10.1109/ISBI.2010.5490215
S. Chun, C. Schretter, J. Fessler
Recent advances in medical imaging technologies have made 4D image sequences available in clinical routine. As a consequence, image registration techniques are evolving from alignment of pairs of static volumetric images to spatio-temporal registration of dynamic (4D) images. Since the elastic image registration problem is ill-posed, additional prior information or constraints are usually required to regularize the problem. This work proposes to enforce local invertibility (diffeomorphism) of 4D deformations. A novel sufficient condition for local invertibility over continuous space and time is proposed and a practical regularization prior is designed from the theory. The method has been applied to an image registration (motion tracking) of a dynamic 4D CT image sequence. Results show that using proposed regularizer leads to deformations that are more plausible for respiratory motion than the standard approach without additional temporal regularization.
医学成像技术的最新进展使4D图像序列可用于临床常规。因此,图像配准技术正在从静态体图像对的对齐发展到动态(4D)图像的时空配准。由于弹性图像配准问题是病态的,通常需要额外的先验信息或约束来正则化问题。本工作提出了增强四维变形的局部可逆性(微分同态)。提出了连续空间和时间上局部可逆性的一个新的充分条件,并从理论上设计了一个实用的正则化先验。该方法已应用于动态四维CT图像序列的图像配准(运动跟踪)。结果表明,与没有额外时间正则化的标准方法相比,使用所提出的正则化器导致的呼吸运动变形更合理。
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引用次数: 4
Out-of-core cone beam reconstruction using multiple GPUs 使用多个gpu的核外锥束重建
Pub Date : 2010-04-14 DOI: 10.1109/ISBI.2010.5490055
Fumihiko Ino, Yusuke Okitsu, Taketo Kishi, S. Ohnishi, K. Hagihara
This paper presents a graphics processing unit (GPU) based method capable of accelerating cone-beam reconstruction of large volume data, which cannot be entirely stored in video memory. Our method accelerates the Feldkamp, Davis and Kress (FDK) algorithm in a multi-GPU environment. We present how the entire volume can be efficiently decomposed into small portions to reduce the usage of video memory on each graphics card. Experimental results are also presented to understand the reconstruction throughput on an nVIDIA Tesla S1070 server. It takes approximately three minutes to reconstruct a 20483-voxel volume from 720 20482-pixel projections. The effective bandwidth of video memory reaches 137 GB/s per GPU, demonstrating a higher utilization of texture caches.
本文提出了一种基于图形处理单元(GPU)的方法,能够对不能完全存储在显存中的大容量数据加速锥束重建。我们的方法在多gpu环境下加速了FDK算法。我们介绍了如何有效地将整个卷分解成小部分,以减少每个图形卡上视频内存的使用。通过实验结果了解了在nVIDIA Tesla S1070服务器上的重构吞吐量。从720个20482像素的投影中重建一个20483体素的体积大约需要3分钟。每个GPU的显存有效带宽达到137 GB/s,纹理缓存的利用率更高。
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引用次数: 4
A wavelet algorithm for zoom-in tomography 放大层析成像的小波算法
Pub Date : 2010-04-14 DOI: 10.1109/ISBI.2010.5490103
M. Langer, F. Peyrin
In zoom-in tomography, the aim is to image a region of interest lying partially or fully within the imaged object, using a high resolution tomographic scan covering only the ROI, and a low resolution scan covering the whole object. We analyze the problem from a multiresolution point of view and propose an algorithm for combining the two data sets using the discrete wavelet transform and the Haar wavelet. We compare the proposed algorithm to a previously reported method that involves padding of the high resolution data with a supersampled version of the low resolution data, to zero padding and edge extension, using synthetic data sets. We show that the proposed algorithm is insensitive to offsets between the two data sets, but that it is slightly more sensitive to noise.
在放大层析成像中,目的是成像部分或全部位于成像对象内的感兴趣区域,使用仅覆盖ROI的高分辨率层析扫描和覆盖整个对象的低分辨率扫描。我们从多分辨率的角度分析了这一问题,并提出了一种利用离散小波变换和Haar小波组合两种数据集的算法。我们将提出的算法与先前报道的方法进行了比较,该方法涉及使用合成数据集使用低分辨率数据的超采样版本填充高分辨率数据,到零填充和边缘扩展。我们证明了所提出的算法对两个数据集之间的偏移不敏感,但对噪声稍微敏感一些。
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引用次数: 3
Voxel based nonrigid image registration using local and partial volume similarity measures 基于体素的非刚性图像配准,使用局部和部分体积相似度度量
Pub Date : 2010-04-14 DOI: 10.1109/ISBI.2010.5490339
D. Loeckx, F. Maes, D. Vandermeulen, P. Suetens
Recently, different approaches have emerged for voxel based nonrigid image registration using local instead of global similarity measures. Benefits are more accurate registration or the ability to subdivide the global similarity in local contributions. Within this article, we provide a general method to localise similarity measures using overlapping regions. Moreover, we extend the concept of partial volume estimation, introduced for mutual information (MI), to other similarity measures. We compare local and global sum of squared differences (SSD), cross correlation (CC) and MI for different sizes of the local regions. In general, local MI gives the highest accuracy, even for image pairs of the same modality. Partial volume estimation slightly improves the accuracy for local measures; the improvement is more pronounced for label images.
近年来,基于体素的非刚性图像配准出现了不同的方法,使用局部而不是全局相似度度量。好处是更准确的登记或细分局部贡献的全球相似性的能力。在本文中,我们提供了一种使用重叠区域定位相似度量的通用方法。此外,我们将为互信息(MI)引入的部分体积估计的概念扩展到其他相似性度量。我们比较了局部和全局的差异平方和(SSD),相互关系(CC)和MI对于不同大小的局部区域。一般来说,局部MI给出了最高的精度,即使是相同模态的图像对。局部体积估计略微提高了局部测量的精度;对于标签图像,改进更为明显。
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引用次数: 1
Deconvolution of poissonian images via iterative shrinkage 泊松图像的迭代收缩反卷积
Pub Date : 2010-04-14 DOI: 10.1109/ISBI.2010.5490237
E. Shaked, O. Michailovich
The problem of reconstruction of digital images from their degraded measurements is regarded as a problem of central importance in various fields of engineering and imaging sciences. In such cases, the degradation is typically caused by the resolution limitations of an imaging device in use and/or by measurement noise. In the field of optics and nuclear imaging, the noise is commonly assumed to obey a Poisson distribution. In this note, a novel method for de-noising and/or de-blurring of digital images corrupted by Poisson noise is introduced. The proposed method is derived under the assumption that the image of interest can be sparsely represented in the domain of a linear transform. Consequently, a shrinkage-based iterative procedure is proposed, which guarantees convergence to the global maximizer of an associated maximuma-posteriori criterion.
从退化的测量数据中重建数字图像的问题被认为是工程和成像科学各个领域的核心问题。在这种情况下,退化通常是由使用中的成像设备的分辨率限制和/或测量噪声引起的。在光学和核成像领域,通常假定噪声服从泊松分布。本文介绍了一种对被泊松噪声破坏的数字图像进行去噪和/或去模糊处理的新方法。提出的方法是在假设感兴趣的图像可以在线性变换域中稀疏表示的情况下推导出来的。在此基础上,提出了一种基于收缩的迭代算法,保证了算法收敛到相关最大后验准则的全局最优点。
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引用次数: 2
期刊
2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro
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