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The elephant in the lab: synthesizability in generative small-molecule design 实验室里的大象:生成小分子设计的可合成性
IF 6.8 2区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-23 DOI: 10.1016/j.coche.2025.101217
Sven M Papidocha , Andreas Burger , Varinia Bernales , Alán Aspuru-Guzik
The design of small molecules with tailored properties is a central goal in chemistry and materials science. Recent advances in machine learning provide powerful tools to accelerate the pace of discovery. One promising avenue for acceleration involves the use of generative models that propose novel candidates for diverse optimization tasks. Despite their promise, these methods are often evaluated solely using computational benchmarks, and many studies fail to advance proposed candidates to experimental validation in the wet lab. A key reason for this gap, the elephant in the room, is the limited synthesizability of the generated molecules. In response, the community has recently developed various strategies to address this challenge and incorporate synthesizability into generative design workflows. In this opinion, we provide a comprehensive overview of recent contributions that explicitly tackle molecular synthesizability, highlighting notable advances. We also discuss key limitations of current approaches and outline promising directions for future research.
设计具有定制特性的小分子是化学和材料科学的中心目标。机器学习的最新进展为加速发现的步伐提供了强大的工具。一个有希望的加速途径包括使用生成模型,为各种优化任务提出新的候选对象。尽管这些方法很有前途,但它们通常仅使用计算基准进行评估,许多研究未能将提出的候选方法推进到湿实验室的实验验证。造成这种差距的一个关键原因是,所生成的分子的合成能力有限。作为回应,社区最近制定了各种策略来应对这一挑战,并将可合成性纳入生成设计工作流程。在这个观点中,我们提供了一个全面的概述,最近的贡献明确地解决分子合成能力,突出显着的进展。我们还讨论了当前方法的主要局限性,并概述了未来研究的有希望的方向。
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引用次数: 0
Enzyme property prediction using artificial intelligence 利用人工智能预测酶的性质
IF 6.8 2区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-22 DOI: 10.1016/j.coche.2025.101208
Le Yuan , Saman Shafaei , Huimin Zhao
Artificial intelligence (AI)-driven enzyme property prediction enables rapid discovery and engineering of enzymes for a wide range of biotechnological and therapeutic applications. Here, we first introduce the key components in AI model development, including enzyme datasets, protein representation methods, and model architectures. We then highlight a variety of AI tools developed for the prediction of enzyme properties and functional annotations, including enzyme structure, kinetic parameters, substrate specificity, thermostability, solubility, Enzyme Commission number, and Gene Ontology term. Moreover, we describe representative downstream applications enabled by these AI tools. Finally, we discuss some challenges and opportunities as well as future prospects.
人工智能(AI)驱动的酶性质预测使酶的快速发现和工程应用于广泛的生物技术和治疗应用。在这里,我们首先介绍了人工智能模型开发的关键组成部分,包括酶数据集、蛋白质表示方法和模型架构。然后,我们重点介绍了用于预测酶性质和功能注释的各种人工智能工具,包括酶结构、动力学参数、底物特异性、热稳定性、溶解度、酶委员会编号和基因本体术语。此外,我们描述了这些人工智能工具支持的代表性下游应用程序。最后,我们讨论了一些挑战和机遇以及未来的展望。
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引用次数: 0
Mathematical programming approaches to supply chain optimization under uncertainty: a review 不确定条件下供应链优化的数学规划方法综述
IF 6.8 2区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-19 DOI: 10.1016/j.coche.2025.101207
Zhifei Yuliu, Ruofan Shi, Marianthi G Ierapetritou
Optimizing supply chains is essential for the efficient and successful operation of chemical engineering processes. Real-world supply chain performance is frequently impacted by uncertainty. This work reviews recent literature in supply chain design and planning under uncertainty, considering two or multiple stages. Progress in various applications such as biomass valorization, waste management, and pharmaceutical manufacturing is examined. Recently used uncertainty handling methods (scenario-based stochastic programming, distributionally robust optimization, fuzzy programming, and chance-constrained programming) and computational challenges are discussed. Key gaps identified for future research include the treatment of decision-dependent uncertainty and solution strategies for nonconvexity.
优化供应链对于化工过程的高效和成功运作至关重要。现实世界的供应链绩效经常受到不确定性的影响。这项工作回顾了不确定性下供应链设计和规划的最新文献,考虑了两个或多个阶段。研究了生物质增值、废物管理和制药制造等各种应用的进展。讨论了近年来常用的不确定性处理方法(基于场景的随机规划、分布鲁棒优化、模糊规划和机会约束规划)和计算挑战。未来研究的关键空白包括决策依赖不确定性的处理和非凸性的解决策略。
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引用次数: 0
Recent progress in scaling up promising electrochemical technologies 扩大有前途的电化学技术的最新进展
IF 6.8 2区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-13 DOI: 10.1016/j.coche.2025.101206
Rafael Granados-Fernández , Miguel A. Rodriguez-Cano , Cristina Sáez, Justo Lobato, Manuel A. Rodrigo
Scaling up electrochemical technologies is key to industrial adoption. Mature processes like chlor-alkali and alumina electrolysis continue evolving to address environmental concerns. Recent commercial advances include water electrolysis and hydrogen fuel cells, though efficiency improvements are needed for profitability. Most emerging technologies face challenges in stability, reproducibility, and operability under real-world conditions. Environmental treatments remain limited to demonstration scale, while CO₂ electroreduction and organic electrosynthesis are still in early development. However, growing pressure to reduce emissions and replace fossil fuels is accelerating interest in e-fuels and electro-organic production. This review highlights recent progress and key barriers in scaling electrochemical technologies toward full-scale industrial implementation.
扩大电化学技术的规模是工业应用的关键。成熟的工艺,如氯碱和氧化铝电解继续发展,以解决环境问题。最近的商业进展包括水电解和氢燃料电池,尽管效率需要提高才能盈利。大多数新兴技术在现实条件下都面临着稳定性、可重复性和可操作性方面的挑战。环境处理仍然局限于示范规模,CO₂电还原和有机电合成仍处于早期发展阶段。然而,减少排放和替代化石燃料的压力越来越大,这加速了人们对电子燃料和电子有机生产的兴趣。本文综述了电化学技术向全面工业应用的最新进展和主要障碍。
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引用次数: 0
Exploring the potential of ammonia electrolysis for hydrogen production: from lab-performance to stack architectures 探索氨电解制氢的潜力:从实验室性能到堆栈架构
IF 6.8 2区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-12 DOI: 10.1016/j.coche.2025.101204
Jesús Serrano-Jiménez, Carlos Martín, Marina Pinzón, Paula Sánchez, Ana Raquel de la Osa
Hydrogen production via ammonia electrolysis is a promising alternative but still faces significant challenges hindering its practical deployment. Research has primarily focused on the development of anodic electrocatalysts, while limited studies address their integration into a functional laboratory-scale electrolyzer. Indeed, only two notable large-scale investigations have been reported. This review provides insight into the advances achieved in the past five years in the field of ammonia electrolysis, encompassing both small- and large-scale systems. First, the ongoing trends in the design of noble and non-noble electrocatalysts to maximize activity and stability have been analyzed. At the laboratory scale, the influence of crucial elements (porous transport layers and membranes) as well as the operational parameters (such as feed composition, temperature, etc.) is discussed, highlighting the most promising approaches to improve overall electrolyzer performance. At a larger scale, the main achievements are associated with system scale-up, particularly those related to stack design and material availability.
氨电解制氢是一种很有前途的替代方案,但仍面临阻碍其实际部署的重大挑战。研究主要集中在阳极电催化剂的发展,而有限的研究解决了他们集成到一个功能实验室规模的电解槽。事实上,只有两个值得注意的大规模调查被报道。本文综述了近五年来在氨电解领域取得的进展,包括小型和大型系统。首先,分析了贵金属和非贵金属电催化剂的设计趋势,以最大限度地提高活性和稳定性。在实验室规模上,讨论了关键元素(多孔传输层和膜)以及操作参数(如进料成分、温度等)的影响,强调了提高电解槽整体性能的最有希望的方法。在更大的范围内,主要的成就是与系统规模扩大有关,特别是与堆设计和材料可用性有关的成就。
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引用次数: 0
Toward industrially relevant testing of activity and stability in alkaline electrolysis electrode materials 工业相关的碱性电解电极材料的活性和稳定性测试
IF 6.8 2区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-10 DOI: 10.1016/j.coche.2025.101205
Madis Lüsi , Miha Hotko , Nik Maselj , Aleš Marsel , Nejc Hodnik
Green hydrogen production via water electrolysis is a pivotal component of the transition to a carbon-neutral energy system. Among available technologies, alkaline water electrolysis (AWE) offers a scalable, cost-effective pathway that avoids reliance on critical raw materials such as precious metals. However, AWE systems must operate under increasingly demanding conditions such as frequent start-up and shut-down cycles driven by intermittent renewable power, which can be mitigated, however, at an increase in capital and operational costs. Furthermore, AWE systems for economic viability need to operate under high current densities. Despite this, most academic studies are still conducted at low current densities and room temperature, conditions far removed from industrial relevance. This review critically examines the limitations of such traditional testing approaches and highlights recent advances in evaluating catalyst activity and durability under industry-representative conditions: elevated temperatures (60–80°C), concentrated electrolytes (20–40 wt% KOH), and high current densities (≥1 A cm⁻²). We explore innovative laboratory-scale cell designs, three-electrode configurations for intrinsic activity screening, and custom single-cell setups that mimic commercial stacks. The importance of long-term stability testing, including accelerated stress tests simulating intermittent operation, is emphasized. Finally, the need for standardized protocols and interlaboratory validation is underscored as essential for bridging the gap between academic research and industrial deployment of robust, non-precious AWE electrodes.
通过水电解绿色制氢是向碳中性能源系统过渡的关键组成部分。在现有的技术中,碱性电解(AWE)提供了一种可扩展的、具有成本效益的途径,避免了对贵金属等关键原材料的依赖。然而,AWE系统必须在越来越苛刻的条件下运行,例如由间歇性可再生能源驱动的频繁启动和关闭周期,然而,这可以通过增加资本和运营成本来缓解。此外,AWE系统的经济可行性需要在高电流密度下运行。尽管如此,大多数学术研究仍然是在低电流密度和室温下进行的,这些条件与工业应用相距甚远。这篇综述严格审查了这种传统测试方法的局限性,并强调了在工业代表性条件下评估催化剂活性和耐久性的最新进展:高温(60-80°C),浓缩电解质(20-40 wt% KOH)和高电流密度(≥1 A cm⁻²)。我们探索创新的实验室规模的电池设计,用于内在活性筛选的三电极配置,以及模仿商业堆栈的定制单电池设置。强调了长期稳定性测试的重要性,包括模拟间歇操作的加速压力测试。最后,标准化协议和实验室间验证的需求被强调为弥合学术研究和工业部署之间的差距至关重要,坚固,非贵重AWE电极。
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引用次数: 0
Process systems engineering: a key enabler of adsorption-based direct air capture 过程系统工程:基于吸附的直接空气捕获的关键推动者
IF 6.8 2区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-08 DOI: 10.1016/j.coche.2025.101202
Hannah E Holmes , Jinsu Kim , Matthew J Realff
Direct air capture (DAC) is a promising technology for removing carbon dioxide from the atmosphere. However, its widespread deployment is challenged by high energy requirements, water management, sorbent degradation, integration with variable renewable energy sources, and fluctuating climatic conditions. The design, operation, and control of solid adsorption-DAC systems is a complex problem that requires holistic engineering of the adsorbent material, adsorption system, DAC process, and upstream and downstream operations. In this review, we show how Process Systems Engineering (PSE) can address this multiscale system design challenge by highlighting recent PSE advancements in three areas: (i) process-informed sorbent selection, (ii) heat integration and water management, and (iii) technological viability assessments. We summarize the progress that PSE has made in connecting sorbent properties to system design and optimization, outlining the key metrics and workflow needed to advance from sorbent to comprehensive system evaluation. We highlight effective energy and resource management strategies, such as DAC integration with heat and power generation, the use of renewable electricity or underutilized sources from existing infrastructure, and combined heat and water integration. For viability assessments, we emphasize comprehensive approaches that integrate technoeconomic and life cycle assessments with sorbent degradation, geospatial analysis, and scaling predictions. We conclude with future PSE directions that will be important for scaling adsorption-DAC, including process strategies for variable energy and climate conditions, predictive sorbent degradation models, and optimized scheduling to balance energy and capital.
直接空气捕获(DAC)是一种很有前途的从大气中去除二氧化碳的技术。然而,它的广泛应用受到高能量需求、水管理、吸附剂降解、与可变可再生能源的结合以及波动的气候条件的挑战。固体吸附-DAC系统的设计、操作和控制是一个复杂的问题,需要对吸附剂材料、吸附系统、DAC过程以及上下游操作进行整体工程设计。在这篇综述中,我们通过强调过程系统工程(PSE)在三个领域的最新进展,展示了过程系统工程(PSE)如何解决这一多尺度系统设计挑战:(i)过程信息吸附剂选择,(ii)热集成和水管理,以及(iii)技术可行性评估。我们总结了PSE在将吸附剂性能与系统设计和优化联系起来方面所取得的进展,概述了从吸附剂到综合系统评估所需的关键指标和工作流程。我们强调有效的能源和资源管理战略,如DAC与热能和发电相结合,利用可再生电力或现有基础设施中未充分利用的资源,以及热水结合利用。对于可行性评估,我们强调综合方法,将技术经济和生命周期评估与吸附剂降解、地理空间分析和尺度预测相结合。最后,我们总结了未来的PSE方向,这些方向对扩大吸附- dac至关重要,包括可变能源和气候条件下的工艺策略,预测吸附剂降解模型,以及平衡能源和资本的优化调度。
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引用次数: 0
Product design, synthesis, and lab automation with The World Avatar 产品设计,合成和实验室自动化与世界化身
IF 6.8 2区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-05 DOI: 10.1016/j.coche.2025.101203
Simon D Rihm , Aleksandar Kondinski , Markus Kraft
This paper investigates how digital chemistry technologies such as machine learning, knowledge engineering, and laboratory automation are revolutionizing materials discovery for pressing global challenges in energy and healthcare. We introduce a comprehensive technology framework that integrates advanced databases, artificial intelligence models, semantic ontologies, and robotic systems to address fundamental challenges in chemical research. The World Avatar platform serves as a central case study, demonstrating its unique ability to connect computational design with experimental execution through dynamic and interoperable workflows. Practical applications in reticular chemistry and automated laboratory systems showcase the platform’s capacity to enable autonomous discovery processes. Together, these technological advances are driving chemical research toward more scalable, reproducible, and intelligent materials development approaches.
本文探讨了机器学习、知识工程和实验室自动化等数字化学技术如何彻底改变材料发现,以应对能源和医疗保健领域紧迫的全球挑战。我们引入了一个综合的技术框架,集成了先进的数据库、人工智能模型、语义本体和机器人系统,以解决化学研究中的基本挑战。World Avatar平台作为一个中心案例研究,展示了其通过动态和可互操作的工作流程将计算设计与实验执行连接起来的独特能力。在网状化学和自动化实验室系统中的实际应用展示了该平台实现自主发现过程的能力。总之,这些技术进步正在推动化学研究朝着更具可扩展性、可重复性和智能的材料开发方法发展。
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引用次数: 0
Toward consistent thermodynamic modeling of CO2 adsorption on Lewatit VPOC 1065 under dry conditions: isotherm variability, data gaps, and model fitting 干燥条件下lewait VPOC 1065上CO2吸附的一致热力学模型:等温线变率,数据缺口和模型拟合
IF 6.8 2区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-03 DOI: 10.1016/j.coche.2025.101201
Mattia Galanti, Rens Teunissen, Ivo Roghair, Martin van Sint Annaland
Accurate thermodynamic characterization of CO2 adsorption on solid amine-functionalized sorbents is essential for modeling and optimizing direct air capture (DAC) processes. This study presents a systematic compilation and comprehensive analysis of available adsorption isotherm data for Lewatit® VPOC 1065, one of the most studied benchmark sorbents for DAC applications. Six independent literature datasets were critically evaluated, revealing significant discrepancies in reported adsorption capacities and inconsistencies across the temperature and partial pressure ranges, particularly within the low-pressure regime relevant for DAC. Global fitting of a temperature-dependent Toth model was performed to investigate the capability of this widely used single-mechanism approach to capture experimental trends across the entire dataset. The Toth model demonstrated substantial limitations, particularly at low partial pressures, highlighting inadequacies in representing the complex adsorption behavior of the sorbent. Moreover, comparative analyses indicated that these limitations stem partially from inter-author variability, experimental uncertainties at ultra-low pressures, and potential unknown adsorption mechanisms, for example, a physisorption — chemisorption dual site mode. Based on these insights, future research directions were identified.
准确的CO2吸附在固体胺功能化吸附剂上的热力学表征对于模拟和优化直接空气捕获(DAC)过程至关重要。本研究对lewait®VPOC 1065 (DAC应用中研究最多的基准吸附剂之一)的可用吸附等温线数据进行了系统的汇编和综合分析。对六个独立的文献数据集进行了严格评估,揭示了在不同温度和分压范围内,特别是在与DAC相关的低压范围内,报告的吸附能力存在显著差异和不一致性。对温度相关Toth模型进行了全局拟合,以研究这种广泛使用的单机制方法在整个数据集中捕捉实验趋势的能力。Toth模型显示出很大的局限性,特别是在低分压下,突出了在表示吸附剂的复杂吸附行为方面的不足。此外,对比分析表明,这些限制部分源于作者之间的差异、超低压力下实验的不确定性以及潜在的未知吸附机制,例如物理吸附-化学吸附双位点模式。在此基础上,确定了未来的研究方向。
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引用次数: 0
Artificial intelligence and machine learning for process and policy design in the transition towards circular economy systems: advancements and opportunities 在向循环经济系统过渡的过程和政策设计中的人工智能和机器学习:进步和机遇
IF 6.8 2区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-11-29 DOI: 10.1016/j.coche.2025.101200
Edgar Martín-Hernández , Borja Hernández , Aurora del Carmen Munguia-Lopez , Sidney Omelon
Novel computational techniques raised under the concept of artificial intelligence have vast applications in science and engineering. In this work, we review the most relevant frameworks and applications of artificial intelligence and machine learning oriented to the development of sustainable production and consumption systems using a bottom-up multi-scale approach. Firstly, we address frameworks for molecular and processing unit design and flowsheet design. Secondly, we assess methods proposed for the environmental and social assessment of superstructures. Finally, we also discuss the contributions and applications of artificial intelligence in the development of policies that support the shift of paradigm to the circular economy.
在人工智能概念下提出的新型计算技术在科学和工程中有着广泛的应用。在这项工作中,我们回顾了使用自下而上的多尺度方法开发可持续生产和消费系统的人工智能和机器学习的最相关框架和应用。首先,我们讨论了分子和处理单元设计以及流程设计的框架。其次,我们评估了为上层建筑的环境和社会评估提出的方法。最后,我们还讨论了人工智能在支持范式向循环经济转变的政策制定中的贡献和应用。
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引用次数: 0
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Current Opinion in Chemical Engineering
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