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Single-Molecule Bioelectronic Sensors with AI-Aided Data Analysis: Convergence and Challenges. 单分子生物电子传感器与人工智能辅助数据分析:融合与挑战。
Pub Date : 2024-09-16 eCollection Date: 2024-10-28 DOI: 10.1021/prechem.4c00048
Yuxin Yang, Yueqi Li, Longhua Tang, Jinghong Li

Single-molecule bioelectronic sensing, a groundbreaking domain in biological research, has revolutionized our understanding of molecules by revealing deep insights into fundamental biological processes. The advent of emergent technologies, such as nanogapped electrodes and nanopores, has greatly enhanced this field, providing exceptional sensitivity, resolution, and integration capabilities. However, challenges persist, such as complex data sets with high noise levels and stochastic molecular dynamics. Artificial intelligence (AI) has stepped in to address these issues with its powerful data processing capabilities. AI algorithms effectively extract meaningful features, detect subtle changes, improve signal-to-noise ratios, and uncover hidden patterns in massive data. This review explores the synergy between AI and single-molecule bioelectronic sensing, focusing on how AI enhances signal processing and data analysis to boost accuracy and reliability. We also discuss current limitations and future directions for integrating AI, highlighting its potential to advance biological research and technological innovation.

单分子生物电子传感是生物研究的一个突破性领域,它揭示了基本生物过程的深刻内涵,从而彻底改变了我们对分子的认识。纳米电极和纳米孔等新兴技术的出现极大地促进了这一领域的发展,提供了卓越的灵敏度、分辨率和集成能力。然而,挑战依然存在,例如具有高噪声水平和随机分子动力学的复杂数据集。人工智能(AI)凭借其强大的数据处理能力已经介入解决这些问题。人工智能算法能有效地提取有意义的特征、检测微妙的变化、提高信噪比并发现海量数据中隐藏的模式。本综述探讨了人工智能与单分子生物电子传感之间的协同作用,重点关注人工智能如何增强信号处理和数据分析以提高准确性和可靠性。我们还讨论了集成人工智能的当前局限性和未来方向,强调了人工智能在推动生物研究和技术创新方面的潜力。
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引用次数: 0
Synthesis of Ultralow-Density Polyethylene Elastomers Using Triarylnaphthyl Iminopyridyl Ni(II) Catalysts. 使用三芳基萘基 Iminopyridyl Ni(II) 催化剂合成超低密度聚乙烯弹性体。
Pub Date : 2024-09-16 eCollection Date: 2024-10-28 DOI: 10.1021/prechem.4c00057
Wenbin Yuan, Shengyu Dai

Recently, the chain-walking ethylene polymerization strategy has garnered widespread attention as an efficient and straightforward method for preparing polyolefin elastomers. In this study, a series of 2,4,8-triarylnaphthyl iminopyridyl nickel catalysts were synthesized and used in ethylene polymerization. These catalysts demonstrated moderate catalytic activity (105 g mol-1 h-1), producing high-molecular-weight (up to 145.5 kg/mol) polyethylene materials with high branching degrees (75-95/1000C) and correspondingly low melting points. Detailed analysis using 13C NMR spectroscopy revealed that the polyethylenes primarily featured methyl and long-chain branches. Mechanical testing of the polyethylene samples obtained from catalysts Ni1-Ni3 exhibited moderate stress at break (4.64-6.97 MPa) coupled with a very high strain at break (1650-3752%), indicating their very good ductility. Furthermore, these polyethylenes showcased great elastic recovery abilities, with strain recovery values ranging from 72% to 85%. In contrast, the polyethylene produced by Ni4 displayed notably inferior tensile strength (0.16 MPa) and tensile recovery (43%). To the best of our knowledge, this study represents the inaugural utilization of a nickel iminopyridyl catalyst in the preparation of a polyethylene thermoplastic elastomer.

最近,链式乙烯聚合策略作为制备聚烯烃弹性体的一种高效、直接的方法受到了广泛关注。本研究合成了一系列 2,4,8-三芳基萘亚氨基吡啶镍催化剂,并将其用于乙烯聚合。这些催化剂表现出中等催化活性(105 g mol-1 h-1),可生成高分子量(高达 145.5 kg/mol)的聚乙烯材料,其支化度较高(75-95/1000C),熔点相应较低。利用 13C NMR 光谱进行的详细分析显示,这些聚乙烯主要具有甲基和长链分支。对从催化剂 Ni1-Ni3 中获得的聚乙烯样品进行的机械测试表明,其断裂应力(4.64-6.97 兆帕)适中,断裂应变(1650-3752%)非常高,表明其延展性非常好。此外,这些聚乙烯还具有很强的弹性恢复能力,应变恢复值在 72% 至 85% 之间。相比之下,Ni4 生产的聚乙烯的拉伸强度(0.16 兆帕)和拉伸恢复能力(43%)明显较差。据我们所知,这项研究是首次利用亚氨基吡啶镍催化剂制备聚乙烯热塑性弹性体。
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引用次数: 0
Synthesis of Ultralow-Density Polyethylene Elastomers Using Triarylnaphthyl Iminopyridyl Ni(II) Catalysts 使用三芳基萘基 Iminopyridyl Ni(II) 催化剂合成超低密度聚乙烯弹性体
Pub Date : 2024-09-16 DOI: 10.1021/prechem.4c0005710.1021/prechem.4c00057
Wenbin Yuan,  and , Shengyu Dai*, 

Recently, the chain-walking ethylene polymerization strategy has garnered widespread attention as an efficient and straightforward method for preparing polyolefin elastomers. In this study, a series of 2,4,8-triarylnaphthyl iminopyridyl nickel catalysts were synthesized and used in ethylene polymerization. These catalysts demonstrated moderate catalytic activity (105 g mol–1 h–1), producing high-molecular-weight (up to 145.5 kg/mol) polyethylene materials with high branching degrees (75–95/1000C) and correspondingly low melting points. Detailed analysis using 13C NMR spectroscopy revealed that the polyethylenes primarily featured methyl and long-chain branches. Mechanical testing of the polyethylene samples obtained from catalysts Ni1Ni3 exhibited moderate stress at break (4.64–6.97 MPa) coupled with a very high strain at break (1650–3752%), indicating their very good ductility. Furthermore, these polyethylenes showcased great elastic recovery abilities, with strain recovery values ranging from 72% to 85%. In contrast, the polyethylene produced by Ni4 displayed notably inferior tensile strength (0.16 MPa) and tensile recovery (43%). To the best of our knowledge, this study represents the inaugural utilization of a nickel iminopyridyl catalyst in the preparation of a polyethylene thermoplastic elastomer.

最近,链式乙烯聚合策略作为制备聚烯烃弹性体的一种高效、直接的方法受到了广泛关注。本研究合成了一系列 2,4,8-三芳基萘亚氨基吡啶镍催化剂,并将其用于乙烯聚合。这些催化剂表现出中等催化活性(105 g mol-1 h-1),可生成高分子量(高达 145.5 kg/mol)的聚乙烯材料,其支化度较高(75-95/1000C),熔点相应较低。利用 13C NMR 光谱进行的详细分析显示,这些聚乙烯主要具有甲基和长链分支。对从催化剂 Ni1-Ni3 中获得的聚乙烯样品进行的机械测试表明,其断裂应力(4.64-6.97 兆帕)适中,断裂应变(1650-3752%)非常高,表明其延展性非常好。此外,这些聚乙烯还具有很强的弹性恢复能力,应变恢复值在 72% 至 85% 之间。相比之下,Ni4 生产的聚乙烯的拉伸强度(0.16 兆帕)和拉伸恢复能力(43%)明显较差。据我们所知,这项研究是首次利用亚氨基吡啶镍催化剂制备聚乙烯热塑性弹性体。
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引用次数: 0
Single-Molecule Bioelectronic Sensors with AI-Aided Data Analysis: Convergence and Challenges 单分子生物电子传感器与人工智能辅助数据分析:融合与挑战
Pub Date : 2024-09-16 DOI: 10.1021/prechem.4c0004810.1021/prechem.4c00048
Yuxin Yang, Yueqi Li, Longhua Tang* and Jinghong Li*, 

Single-molecule bioelectronic sensing, a groundbreaking domain in biological research, has revolutionized our understanding of molecules by revealing deep insights into fundamental biological processes. The advent of emergent technologies, such as nanogapped electrodes and nanopores, has greatly enhanced this field, providing exceptional sensitivity, resolution, and integration capabilities. However, challenges persist, such as complex data sets with high noise levels and stochastic molecular dynamics. Artificial intelligence (AI) has stepped in to address these issues with its powerful data processing capabilities. AI algorithms effectively extract meaningful features, detect subtle changes, improve signal-to-noise ratios, and uncover hidden patterns in massive data. This review explores the synergy between AI and single-molecule bioelectronic sensing, focusing on how AI enhances signal processing and data analysis to boost accuracy and reliability. We also discuss current limitations and future directions for integrating AI, highlighting its potential to advance biological research and technological innovation.

单分子生物电子传感是生物研究的一个突破性领域,它揭示了基本生物过程的深刻内涵,从而彻底改变了我们对分子的认识。纳米电极和纳米孔等新兴技术的出现极大地促进了这一领域的发展,提供了卓越的灵敏度、分辨率和集成能力。然而,挑战依然存在,例如具有高噪声水平和随机分子动力学的复杂数据集。人工智能(AI)凭借其强大的数据处理能力已经介入解决这些问题。人工智能算法能有效地提取有意义的特征、检测微妙的变化、提高信噪比并发现海量数据中隐藏的模式。本综述探讨了人工智能与单分子生物电子传感之间的协同作用,重点关注人工智能如何增强信号处理和数据分析以提高准确性和可靠性。我们还讨论了集成人工智能的当前局限性和未来方向,强调了人工智能在推动生物研究和技术创新方面的潜力。
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引用次数: 0
LASP to the Future of Atomic Simulation: Intelligence and Automation. 从LASP到原子模拟的未来:智能和自动化。
Pub Date : 2024-09-14 eCollection Date: 2024-12-23 DOI: 10.1021/prechem.4c00060
Xin-Tian Xie, Zheng-Xin Yang, Dongxiao Chen, Yun-Fei Shi, Pei-Lin Kang, Sicong Ma, Ye-Fei Li, Cheng Shang, Zhi-Pan Liu

Atomic simulations aim to understand and predict complex physical phenomena, the success of which relies largely on the accuracy of the potential energy surface description and the efficiency to capture important rare events. LASP software (large-scale atomic simulation with a Neural Network Potential), released in 2018, incorporates the key ingredients to fulfill the ultimate goal of atomic simulations by combining advanced neural network potentials with efficient global optimization methods. This review introduces the recent development of the software along two main streams, namely, higher intelligence and more automation, to solve complex material and reaction problems. The latest version of LASP (LASP 3.7) features the global many-body function corrected neural network (G-MBNN) to improve the PES accuracy with low cost, which achieves a linear scaling efficiency for large-scale atomic simulations. The key functionalities of LASP are updated to incorporate (i) the ASOP and ML-interface methods for finding complex surface and interface structures under grand canonic conditions; (ii) the ML-TS and MMLPS methods to identify the lowest energy reaction pathway. With these powerful functionalities, LASP now serves as an intelligent data generator to create computational databases for end users. We exemplify the recent LASP database construction in zeolite and the metal-ligand properties for a new catalyst design.

原子模拟旨在理解和预测复杂的物理现象,其成功与否在很大程度上取决于势能面描述的准确性和捕捉重要罕见事件的效率。2018 年发布的 LASP 软件(具有神经网络势能的大规模原子模拟)通过将先进的神经网络势能与高效的全局优化方法相结合,融入了实现原子模拟终极目标的关键要素。这篇综述介绍了该软件的最新发展,主要沿着两条主线,即更高的智能化和更高的自动化,来解决复杂的材料和反应问题。LASP 的最新版本(LASP 3.7)采用了全局多体函数校正神经网络(G-MBNN),以低成本提高了 PES 的精度,实现了大规模原子模拟的线性扩展效率。LASP 的关键功能得到了更新,纳入了 (i) ASOP 和 ML-interface 方法,用于寻找大能级条件下的复杂表面和界面结构;(ii) ML-TS 和 MMLPS 方法,用于确定能量最低的反应途径。凭借这些强大的功能,LASP 现在可以作为智能数据生成器,为最终用户创建计算数据库。我们将举例说明 LASP 最近在沸石和金属配体特性方面的数据库建设情况,以便设计新的催化剂。
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引用次数: 0
LASP to the Future of Atomic Simulation: Intelligence and Automation 从LASP到原子模拟的未来:智能和自动化
Pub Date : 2024-09-14 DOI: 10.1021/prechem.4c0006010.1021/prechem.4c00060
Xin-Tian Xie, Zheng-Xin Yang, Dongxiao Chen, Yun-Fei Shi, Pei-Lin Kang, Sicong Ma, Ye-Fei Li, Cheng Shang* and Zhi-Pan Liu*, 

Atomic simulations aim to understand and predict complex physical phenomena, the success of which relies largely on the accuracy of the potential energy surface description and the efficiency to capture important rare events. LASP software (large-scale atomic simulation with a Neural Network Potential), released in 2018, incorporates the key ingredients to fulfill the ultimate goal of atomic simulations by combining advanced neural network potentials with efficient global optimization methods. This review introduces the recent development of the software along two main streams, namely, higher intelligence and more automation, to solve complex material and reaction problems. The latest version of LASP (LASP 3.7) features the global many-body function corrected neural network (G-MBNN) to improve the PES accuracy with low cost, which achieves a linear scaling efficiency for large-scale atomic simulations. The key functionalities of LASP are updated to incorporate (i) the ASOP and ML-interface methods for finding complex surface and interface structures under grand canonic conditions; (ii) the ML-TS and MMLPS methods to identify the lowest energy reaction pathway. With these powerful functionalities, LASP now serves as an intelligent data generator to create computational databases for end users. We exemplify the recent LASP database construction in zeolite and the metal–ligand properties for a new catalyst design.

原子模拟旨在理解和预测复杂的物理现象,其成功与否很大程度上取决于势能表面描述的准确性和捕获重要罕见事件的效率。LASP软件(大规模原子模拟与神经网络电位)于2018年发布,通过将先进的神经网络电位与高效的全局优化方法相结合,融合了实现原子模拟最终目标的关键要素。本文主要介绍了该软件在解决复杂材料和反应问题方面的两大发展趋势,即更高的智能化和更自动化。最新版本的LASP (LASP 3.7)采用全局多体函数校正神经网络(G-MBNN)以低成本提高PES精度,实现了大规模原子模拟的线性缩放效率。LASP的主要功能进行了更新,纳入了(i)在大经典条件下寻找复杂表面和界面结构的ASOP和ML-interface方法;(ii) ML-TS和MMLPS方法确定最低能量反应途径。有了这些强大的功能,LASP现在可以作为智能数据生成器为最终用户创建计算数据库。我们举例说明了最近在沸石上的LASP数据库建设和金属配体性质的新催化剂设计。
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引用次数: 0
Leveraging Machine Learning Potentials for In-Situ Searching of Active sites in Heterogeneous Catalysis 利用机器学习潜力原位搜索异相催化中的活性位点
Pub Date : 2024-09-11 DOI: 10.1021/prechem.4c0005110.1021/prechem.4c00051
Xiran Cheng, Chenyu Wu, Jiayan Xu, Yulan Han, Wenbo Xie* and P. Hu*, 

This Perspective explores the integration of machine learning potentials (MLPs) in the research of heterogeneous catalysis, focusing on their role in identifying in situ active sites and enhancing the understanding of catalytic processes. MLPs utilize extensive databases from high-throughput density functional theory (DFT) calculations to train models that predict atomic configurations, energies, and forces with near-DFT accuracy. These capabilities allow MLPs to handle significantly larger systems and extend simulation times beyond the limitations of traditional ab initio methods. Coupled with global optimization algorithms, MLPs enable systematic investigations across vast structural spaces, making substantial contributions to the modeling of catalyst surface structures under reactive conditions. The review aims to provide a broad introduction to recent advancements and practical guidance on employing MLPs and also showcases several exemplary cases of MLP-driven discoveries related to surface structure changes under reactive conditions and the nature of active sites in heterogeneous catalysis. The prevailing challenges faced by this approach are also discussed.

本视角探讨了机器学习势(MLP)在异相催化研究中的整合,重点关注其在识别原位活性位点和增强对催化过程的理解方面的作用。MLP 利用来自高通量密度泛函理论 (DFT) 计算的大量数据库来训练模型,从而以接近 DFT 的精度预测原子构型、能量和作用力。这些功能使 MLP 能够处理更大的系统,并延长模拟时间,从而超越传统 ab initio 方法的限制。MLP 与全局优化算法相结合,可以对广阔的结构空间进行系统研究,为反应条件下催化剂表面结构建模做出了重大贡献。本综述旨在广泛介绍 MLP 的最新进展和应用 MLP 的实践指导,并展示几个 MLP 驱动的发现范例,这些发现涉及反应条件下的表面结构变化和异相催化中活性位点的性质。此外,还讨论了这种方法面临的普遍挑战。
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引用次数: 0
Leveraging Machine Learning Potentials for In-Situ Searching of Active sites in Heterogeneous Catalysis. 利用机器学习潜力在多相催化中原位搜索活性位点。
Pub Date : 2024-09-11 eCollection Date: 2024-11-25 DOI: 10.1021/prechem.4c00051
Xiran Cheng, Chenyu Wu, Jiayan Xu, Yulan Han, Wenbo Xie, P Hu

This Perspective explores the integration of machine learning potentials (MLPs) in the research of heterogeneous catalysis, focusing on their role in identifying in situ active sites and enhancing the understanding of catalytic processes. MLPs utilize extensive databases from high-throughput density functional theory (DFT) calculations to train models that predict atomic configurations, energies, and forces with near-DFT accuracy. These capabilities allow MLPs to handle significantly larger systems and extend simulation times beyond the limitations of traditional ab initio methods. Coupled with global optimization algorithms, MLPs enable systematic investigations across vast structural spaces, making substantial contributions to the modeling of catalyst surface structures under reactive conditions. The review aims to provide a broad introduction to recent advancements and practical guidance on employing MLPs and also showcases several exemplary cases of MLP-driven discoveries related to surface structure changes under reactive conditions and the nature of active sites in heterogeneous catalysis. The prevailing challenges faced by this approach are also discussed.

本展望探讨了机器学习电位(MLPs)在多相催化研究中的集成,重点关注它们在识别原位活性位点和增强对催化过程的理解方面的作用。mlp利用来自高通量密度泛函理论(DFT)计算的广泛数据库来训练模型,以接近DFT的精度预测原子构型、能量和力。这些功能使mlp能够处理更大的系统,并且超越了传统从头算方法的限制,延长了仿真时间。与全局优化算法相结合,mlp能够在巨大的结构空间中进行系统的研究,为反应条件下催化剂表面结构的建模做出了重大贡献。这篇综述的目的是广泛介绍mlp的最新进展和应用指导,并展示了几个典型的mlp驱动的发现,这些发现与反应条件下表面结构的变化和多相催化中活性位点的性质有关。本文还讨论了这种方法所面临的主要挑战。
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引用次数: 0
Precision Chemistry for Two-Dimensional Materials. 二维材料的精密化学。
Pub Date : 2024-08-26 DOI: 10.1021/prechem.4c00065
Xiangfeng Duan
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引用次数: 0
Precision Chemistry for Two-Dimensional Materials 二维材料的精密化学
Pub Date : 2024-08-26 DOI: 10.1021/prechem.4c0006510.1021/prechem.4c00065
Xiangfeng Duan*, 
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引用次数: 0
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Precision Chemistry
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