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UV protection of euglenoids: computation of the electromagnetic response 类绿藻的紫外线防护:电磁响应的计算
Pub Date : 2015-06-19 DOI: 10.1117/12.2180935
A. Dolinko, C. Valencia, D. Skigin, M. Inchaussandague, Analía Tolivia, V. Conforti
Euglenoids are a group of predominantly free-living unicellular microorganisms that mostly live in freshwater bodies but can also be found in marine and brackish waters. These organisms have a characteristic that distinguishes them form the other protists: they are covered by a surface pellicle formed by S-shaped overlapping bands which resemble a diffraction grating. These microorganisms have developed numerous protection mechanisms intended to avoid or reduce the damage produced by UV radiation, such as the production of pigments and the repair mechanisms in hours of darkness and during daylight. In a recent paper we have investigated the role played by the pellicle of Euglenoids in the protection of the cell against UV radiation, by means of an electromagnetic approach based on the approximation of the pellicle profile by a one-dimensional diffraction grating. This simplified model allowed us to confirm that under certain incidence conditions, the corrugation of the pellicle helps increase the UV reflection, and consequently, diminish the UV radiation that enters the cell. In order to analyze the electromagnetic response of the whole cell, we extend two different approaches to calculate the reflected response: a simulation method especially developed to deal with complex biological structures that permits the introduction of the scattering object via an electron microscopy image, and the integral method, which has been widely used to compute the electromagnetic response of finite structures. Numerical results of near and far fields are shown.
类真核生物是一组主要是自由生活的单细胞微生物,主要生活在淡水水体中,但也可以在海洋和咸淡水中发现。这些生物有一个区别于其他原生生物的特征:它们被一层由类似于衍射光栅的s形重叠带组成的表面膜所覆盖。这些微生物已经发展出许多保护机制,旨在避免或减少紫外线辐射造成的损害,例如色素的产生和在黑暗和白天的修复机制。在最近的一篇论文中,我们研究了euglenoid的膜在保护细胞免受紫外线辐射中的作用,通过基于一维衍射光栅的膜轮廓近似的电磁方法。这个简化的模型使我们能够确认,在一定的入射条件下,膜的波纹有助于增加紫外线反射,从而减少进入细胞的紫外线辐射。为了分析整个细胞的电磁响应,我们扩展了两种不同的方法来计算反射响应:一种是专门用于处理复杂生物结构的模拟方法,它允许通过电子显微镜图像引入散射物体;一种是积分方法,它已广泛用于计算有限结构的电磁响应。给出了近场和远场的数值结果。
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引用次数: 2
Portable fluorescence microendoscope system for smartphones and its applications 智能手机便携式荧光显微内窥镜系统及其应用
Pub Date : 2015-06-19 DOI: 10.1117/12.2180987
Pablo Aurelio Gómez García, Ramon Gabriel Teixeira Rosa, S. Pratavieira, C. Kurachi
A portable microscope/microendoscope will be presented in this article. The system was specially designed for Smartphones and taking into account its simplicity, will be able to bring this technology to almost every doctor’s office. It is worth mentioning its flexibility of use, that allows several modes since all the components are interchangeable (the illumination LED, the lens, the optic filters, etc) resulting in different applications, from medical applications until other areas (for example, the inspection of non-accessible pieces of plane engines). In addition, the system has a double platform, working as a conventional microscope or as a fiberoptic microendoscope. In situ and cell smear interrogation of oral mucosa, using a proflavine as dye will be presented. The price of the system does not exceed US$ 350, plus the price of the fiber bundle (around US$ 500) turning it onto a high resolution affordable system.
本文将介绍一种便携式显微镜/显微内窥镜。该系统是专门为智能手机设计的,考虑到它的简单性,它将能够把这项技术带到几乎每个医生的办公室。值得一提的是其使用的灵活性,允许多种模式,因为所有组件都是可互换的(照明LED、镜头、滤光片等),从而产生不同的应用,从医疗应用到其他领域(例如,检查无法接触的飞机发动机部件)。此外,该系统具有双平台,可作为传统显微镜或光纤显微内窥镜使用。本文将介绍以丙黄为染料的口腔黏膜原位及细胞涂片检查。该系统的价格不超过350美元,加上光纤束的价格(约500美元),使其成为一个高分辨率的负担得起的系统。
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引用次数: 1
New speckle analysis algorithm for flow visualization in optical coherence tomography images 光学相干层析成像流显示的散斑分析新算法
Pub Date : 2015-06-19 DOI: 10.1117/12.2180811
L. D. De Pretto, G. Nogueira, A. Freitas
Optical Coherence Tomography (OCT) is a noninvasive technique capable of generating in vivo high-resolution images. However, OCT images are degraded by a granular and random noise called speckle. Nevertheless, such a noise may be used to gather information regarding the sample, as is exploited by techniques like Speckle Variance – OCT (SV-OCT). SV-OCT is widely used in the literature, but the variance calculation is computationally expensive. Therefore, we propose a new algorithm to employ speckle in identifying flow based on the evaluation of intensity fluctuation between two consecutively acquired OCT images. Our results were compared to those obtained by traditional method of Speckle Variance to demonstrate the feasibility of the technique. Both algorithms were applied to series of OCT images from a microchannel flow phantom, as well as from a biological tissue with blood flow. The results obtained by our method are in good agreement with those from SV-OCT. We've also analyzed the performance of both algorithms, registering the processing time and memory use. Our method performed 31% faster with the same use of memory. Therefore, we demonstrated a new method to map flow on OCT images.
光学相干断层扫描(OCT)是一种非侵入性技术,能够产生体内高分辨率图像。然而,OCT图像被称为散斑的颗粒和随机噪声降低。然而,这样的噪声可以用来收集关于样本的信息,就像像散斑方差-OCT (SV-OCT)这样的技术所利用的那样。SV-OCT在文献中被广泛使用,但方差计算的计算量很大。因此,我们提出了一种基于评估连续获取的两张OCT图像之间的强度波动的新算法,将散斑用于识别流。将结果与传统的散斑方差方法进行了比较,验证了该方法的可行性。这两种算法都应用于来自微通道流动幻影的一系列OCT图像,以及来自有血流的生物组织的图像。所得结果与SV-OCT结果吻合较好。我们还分析了两种算法的性能,记录了处理时间和内存使用情况。在使用相同内存的情况下,我们的方法的执行速度提高了31%。因此,我们展示了一种在OCT图像上映射血流的新方法。
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引用次数: 0
Development of an in situ controllable polymerization tool and process for hydrogel used to replace nucleus pulposus 替代髓核的水凝胶原位可控聚合工具及工艺的研制
Pub Date : 2015-06-19 DOI: 10.1117/12.2180457
A. Schmocker, A. Khoushabi, P. Bourban, C. Schizas, D. Pioletti, C. Moser
Currently implants or tissue replacements are inserted either as a whole implant or by injecting a liquid which polymerizes to form a solid implant at the appropriate location. This is either highly invasive or not controllable. We developed a tool to perform such surgeries in a minimally invasive and controllable way. It combines photopolymerization and fluorescence spectroscopy in a surgical apparatus. However, to successfully replace tissue such as cartilage or an intervertebral disc, photopolymerizable materials do not only need to be photoactive. They should also be able to withstand the environmental loading conditions after implantation. Therefore we developed a set of in situ and in vitro tests adapted to the evaluation of photopolymerized tissue replacements and implants. In particular in this article, we report on a method, which combines photopolymerization and photorheology to track the current state of polymer during photopolymerization.
目前植入物或组织替代物要么作为整个植入物插入,要么通过在适当位置注入聚合形成固体植入物的液体插入。这要么是高度侵入性的,要么是不可控制的。我们开发了一种工具,以微创和可控的方式进行这种手术。它结合了光聚合和荧光光谱的手术设备。然而,为了成功地替代软骨或椎间盘等组织,光聚合材料不仅需要具有光活性。它们还应能够承受植入后的环境载荷条件。因此,我们开发了一套适合于评估光聚合组织替代物和植入物的原位和体外测试。在本文中,我们特别报道了一种结合光聚合和光流变学的方法来跟踪聚合物在光聚合过程中的当前状态。
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引用次数: 0
Diffuse reflectance spectroscopy of liver tissue 肝组织漫反射光谱
Pub Date : 2015-06-19 DOI: 10.1117/12.2181008
N. Reistad, J. Nilsson, O. Vilhelmsson Timmermand, C. Sturesson, S. Andersson-Engels
Diffuse reflectance spectroscopy (DRS) with a fiber-optic contact probe is a cost-effective, rapid, and non-invasive optical method used to extract diagnosis information of tissue. By combining commercially available VIS- and NIR-spectrometers with various fiber-optic contact-probes, we have access to the full wavelength range from around 400 to 1600 nm. Using this flexible and portable spectroscopy system, we have acquired ex-vivo DRS-spectra from murine, porcine, and human liver tissue. For extracting the tissue optical properties from the measured spectra, we have employed and compared predictions from two models for light propagation in tissue, diffusion theory model (DT) and Monte Carlo simulations (MC). The focus in this work is on the capacity of this DRS-technique in discriminating metastatic tumor tissue from normal liver tissue as well as in assessing and characterizing damage to non-malignant liver tissue induced by preoperative chemotherapy for colorectal liver metastases.
利用光纤接触探针进行漫反射光谱(DRS)是一种经济、快速、无创的提取组织诊断信息的光学方法。通过将市售的VIS和nir光谱仪与各种光纤接触探针相结合,我们可以获得从大约400到1600纳米的全波长范围。利用这种灵活便携的光谱系统,我们获得了小鼠、猪和人类肝脏组织的离体drs光谱。为了从测量光谱中提取组织光学特性,我们采用了两种光在组织中的传播模型,扩散理论模型(DT)和蒙特卡罗模拟(MC),并对其预测结果进行了比较。本研究的重点是dr - s技术在区分转移性肿瘤组织和正常肝组织以及评估和表征结肠直肠癌肝转移术前化疗对非恶性肝组织损伤方面的能力。
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引用次数: 16
Fluorescence spectroscopy for assessment of liver transplantation grafts concerning graft viability and patient survival 荧光光谱法评估肝移植移植物对移植物活力和患者生存的影响
Pub Date : 2015-06-19 DOI: 10.1117/12.2180730
J. D. Vollet Filho, M. D. da Silveira, O. Castro-e-Silva, V. Bagnato, C. Kurachi
Evaluating transplantation grafts at harvest is essential for its success. Laser-induced fluorescence spectroscopy (LIFS) can help monitoring changes in metabolic/structural conditions of tissue during transplantation. The aim of the present study is to correlate LIFSobtained spectra of human hepatic grafts during liver transplantation with post-operative patients' mortality rate and biochemical parameters, establishing a method to exclude nonviable grafts before implantation. Orthotopic liver transplantation, piggyback technique was performed in 15 patients. LIFS was performed under 408nm excitation. Collection was performed immediately after opening donor’s abdominal cavity, after cold perfusion, end of back-table period, and 5 min and 1 h after warm perfusion at recipient. Fluorescence information was compared to lactate, creatinine, bilirubin and INR levels and to survival status. LIFS was sensitive to liver changes during transplantation stages. Study-in-progress; initial results indicate correlation between fluorescence and life/death status of patients.
在收获时评估移植移植物对其成功至关重要。激光诱导荧光光谱(LIFS)可以帮助监测移植过程中组织代谢/结构条件的变化。本研究的目的是将肝移植过程中获得的人肝移植物lifso光谱与术后患者死亡率和生化参数相关联,建立一种在移植前排除无活力移植物的方法。对15例患者行原位肝移植术。在408nm激发下进行LIFS。在打开供体腹腔后、冷灌注后、背台期结束后、受体热灌注后5 min和1 h立即采集。将荧光信息与乳酸、肌酐、胆红素和INR水平以及生存状态进行比较。LIFS对移植期肝脏变化敏感。Study-in-progress;初步结果表明荧光与患者的生/死状态之间存在相关性。
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引用次数: 3
In situ visualization of dermal collagen dynamics during skin burn healing using second-harmonic-generation microscopy 使用二次谐波显微镜观察皮肤烧伤愈合过程中真皮胶原动态的原位可视化
Pub Date : 2015-06-19 DOI: 10.1117/12.2180895
T. Yasui, E. Hase, R. Tanaka, S. Fukushima, T. Araki
Burn healing is a process to repair thermally damaged tissues. Although burn healing has many aspects, it is common for dynamics of collagen fiber, such as decomposition, production, or growth, to be closely related with burn healing. If such healing process can be visualized from the viewpoint of the collagen dynamics, one may obtain new findings regarding biological repairing mechanisms in the healing process. To this end, second-harmonic-generation (SHG) light will be an effective optical probe because of high selectivity and good image contrast to collagen molecules as well as high spatial resolution, optical three-dimensional (3D) sectioning, minimal invasiveness, deep penetration, the absence of interference from background light, and in situ measurement without additional staining. Furthermore, since SHG light arises from a non-centrosymmetric triple helix of three polypeptide chains in the collagen molecule, its intensity decreases and finally disappears when thermal denaturation caused by the skin burn changes the structure of this molecule to a centrosymmetric random coil. Therefore, optical assessment of skin burn has been investigated by SHG microscopy. In this paper, we applied SHG microscopy for in situ imaging of the healing process in animal skin burn and successfully visualized the decomposition, production, and growth of renewal collagen fibers as a series of time-lapse images in the same subject.
烧伤愈合是修复热损伤组织的过程。虽然烧伤愈合有许多方面,但胶原纤维的动力学,如分解、产生或生长,通常与烧伤愈合密切相关。如果能从胶原动力学的角度来观察这种愈合过程,人们可能会对愈合过程中的生物修复机制有新的发现。为此,二次谐波(SHG)光将成为一种有效的光学探针,因为它具有高选择性和良好的胶原蛋白分子图像对比度以及高空间分辨率、光学三维(3D)切片、最小侵入性、深穿透性、没有背景光干扰以及无需额外染色的原位测量。此外,由于SHG光产生于胶原蛋白分子中三条多肽链的非中心对称三螺旋结构,因此当皮肤烧伤引起的热变性使该分子结构变为中心对称随机线圈时,SHG光的强度减弱,最终消失。因此,使用SHG显微镜对皮肤烧伤的光学评价进行了研究。在本文中,我们应用SHG显微镜对动物皮肤烧伤的愈合过程进行原位成像,并成功地将胶原纤维的分解、产生和生长作为一系列延时图像在同一受试者中可视化。
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引用次数: 0
Single LED-based device to perform widefield fluorescence imaging and photodynamic therapy 单led为基础的设备,执行宽视场荧光成像和光动力治疗
Pub Date : 2015-06-19 DOI: 10.1117/12.2185925
C. Grecco, H. Buzzá, M. D. Stringasci, C. T. Andrade, J. D. Vollet-Filho, S. Pratavieira, A. L. Zanchin, A. M. Tuboy, V. Bagnato
Photodynamic therapy (PDT) is a treatment modality that can be indicated for several cancer types and pre-cancer lesions. One of the main applications of PDT is the treatment of superficial skin lesions such as basal cell carcinoma, Bowen’s disease and actinic keratosis. Three elements are necessary in PDT, a photosensitizer (PS); light at specific wavelength to be absorbed by the PS, and molecular oxygen. A typical PS used for skin lesion is protoporphyrin IX (PpIX), which is an intrinsic PS; its production is stimulated by a pro-drug, such as 5-aminolevulinic acid (ALA). Before starting a treatment, it is very important to follow up the PpIX production (to ensure that enough PS was produced prior to a PDT application) and, during a PDT session, to monitor its photodegradation (as it is evidence of the photodynamic effect taking place). The aim of this paper is to present a unique device, LINCE (MMOptics - São Carlos, Brazil), that brings together two probes that can, respectively, allow for fluorescence imaging and work as a light source for PDT treatment. The fluorescence probe of the system is optically based on 400 nm LED (light emitting diodes) arrays that allow observing the fluorescence emission over 450 nm. The PDT illumination probe options are constituted of 630 nm LED arrays for small areas and, for large areas, of both 630 nm and 450 nm LED arrays. Joining both functions at the same device makes PDT treatment simpler, properly monitorable and, hence, more clinically feasible. LINCE has been used in almost 1000 PDT treatments of superficial skin lesions in Brazil, with 88.4% of clearance of superficial BCC.
光动力疗法(PDT)是一种治疗方式,可以指几种癌症类型和癌前病变。PDT的主要应用之一是治疗浅表皮肤病变,如基底细胞癌、Bowen病和光化性角化病。PDT是一种光敏剂(PS),它需要三个元素;特定波长的光被PS和分子氧吸收。用于皮肤病变的典型PS是原卟啉IX (PpIX),它是一种内在PS;它的产生是由前药刺激的,如5-氨基乙酰丙酸(ALA)。在开始治疗之前,跟踪PpIX的生产(确保在PDT应用之前产生足够的PS)以及在PDT治疗期间监测其光降解(因为它是发生光动力效应的证据)非常重要。本文的目的是介绍一种独特的装置,LINCE (MMOptics - s o Carlos,巴西),它汇集了两个探针,分别可以进行荧光成像和作为PDT治疗的光源。该系统的荧光探针在光学上基于400 nm LED(发光二极管)阵列,可以观察450 nm以上的荧光发射。PDT照明探头选项由630 nm LED阵列组成,用于小区域,对于大区域,由630 nm和450 nm LED阵列组成。在同一设备上结合这两种功能使PDT治疗更简单,更容易监测,因此在临床上更可行。在巴西,LINCE已用于近1000例浅表皮肤病变的PDT治疗,浅表BCC清除率为88.4%。
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引用次数: 30
Applications of Raman spectroscopy in life science 拉曼光谱在生命科学中的应用
Pub Date : 2015-06-19 DOI: 10.1117/12.2180653
A. Martin, Cláudio A. T. Soto, S. M. Ali, L. M. Neto, R. Canevari, L. Pereira, P. Fávero
Raman spectroscopy has been applied to the analysis of biological samples for the last 12 years providing detection of changes occurring at the molecular level during the pathological transformation of the tissue. The potential use of this technology in cancer diagnosis has shown encouraging results for the in vivo, real-time and minimally invasive diagnosis. Confocal Raman technics has also been successfully applied in the analysis of skin aging process providing new insights in this field. In this paper it is presented the latest biomedical applications of Raman spectroscopy in our laboratory. It is shown that Raman spectroscopy (RS) has been used for biochemical and molecular characterization of thyroid tissue by micro-Raman spectroscopy and gene expression analysis. This study aimed to improve the discrimination between different thyroid pathologies by Raman analysis. A total of 35 thyroid tissues samples including normal tissue (n=10), goiter (n=10), papillary (n=10) and follicular carcinomas (n=5) were analyzed. The confocal Raman spectroscopy allowed a maximum discrimination of 91.1% between normal and tumor tissues, 84.8% between benign and malignant pathologies and 84.6% among carcinomas analyzed. It will be also report the application of in vivo confocal Raman spectroscopy as an important sensor for detecting advanced glycation products (AGEs) on human skin.
在过去的12年里,拉曼光谱已经被应用于生物样品的分析,提供了在组织病理转化过程中分子水平上发生的变化的检测。该技术在癌症诊断中的潜在应用已经在体内、实时和微创诊断方面显示出令人鼓舞的结果。共聚焦拉曼技术也成功地应用于皮肤老化过程的分析,为这一领域提供了新的见解。本文介绍了拉曼光谱在生物医学领域的最新应用。结果表明,拉曼光谱(RS)已被用于甲状腺组织的微拉曼光谱和基因表达分析的生化和分子表征。本研究旨在通过拉曼分析提高甲状腺不同病理的鉴别能力。共分析35例甲状腺组织样本,包括正常组织(n=10)、甲状腺肿(n=10)、乳头状(n=10)和滤泡癌(n=5)。共聚焦拉曼光谱对正常组织和肿瘤组织的最大识别率为91.1%,对良恶性组织的最大识别率为84.8%,对癌组织的最大识别率为84.6%。本文还将报道体内共聚焦拉曼光谱作为检测人体皮肤上晚期糖基化产物(AGEs)的重要传感器的应用。
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引用次数: 2
3D Monte Carlo radiation transfer modelling of photodynamic therapy 光动力治疗的三维蒙特卡罗辐射转移模型
Pub Date : 2015-06-19 DOI: 10.1117/12.2180744
C. L. Campbell
The effects of ageing and skin type on Photodynamic Therapy (PDT) for different treatment methods have been theoretically investigated. A multilayered Monte Carlo Radiation Transfer model is presented where both daylight activated PDT and conventional PDT are compared. It was found that light penetrates deeper through older skin with a lighter complexion, which translates into a deeper effective treatment depth. The effect of ageing was found to be larger for darker skin types. The investigation further strengthens the usage of daylight as a potential light source for PDT where effective treatment depths of about 2 mm can be achieved.
从理论上研究了不同治疗方法对衰老和皮肤类型对光动力疗法(PDT)的影响。提出了一种多层蒙特卡罗辐射传输模型,并对日光激活PDT和常规PDT进行了比较。研究发现,光线可以穿透肤色较浅的老年皮肤,从而转化为更深的有效治疗深度。研究发现,对于肤色较深的人来说,衰老的影响更大。该研究进一步加强了日光作为PDT的潜在光源的使用,其中可以实现约2mm的有效处理深度。
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引用次数: 4
期刊
Biophotonics South America
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