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New speckle analysis method for optical coherence tomography signal based on autocorrelation 基于自相关的光学相干层析成像信号散斑分析新方法
Pub Date : 2015-06-19 DOI: 10.1117/12.2180813
L. D. De Pretto, G. Nogueira, A. Freitas
Optical Coherence Tomography (OCT) is a noninvasive imaging technique with high resolution widely used for in vivo applications. Nonetheless, OCT is prone to speckle, a granular noise that degrades the OCT signal. Speckle statistics may, nevertheless, reveal information regarding the scatterers from which it originates. This fact is exploited by techniques such as Speckle Variance-OCT (SVOCT). SVOCT, however, doesn’t provide quantitative information, which is a major drawback for the use of speckle based techniques on OCT. In the present work we attack this problem, proposing a new method for analysis of speckle in OCT signal, based on autocorrelation. We associate the changes in decorrelation time of the signal with the changes in flow velocity. It is expected that greater velocities result in lower decorrelation times. To verify that, milk was pumped through a microchannel at different velocities, and the decorrelation time was computed for a single point in the center of the microchannel, sampled at 8 kHz rate. Our results suggest that for flows rates greater than 1 μl/min it is possible to associate decorrelation time with flow velocity, while velocities below that value are not distinguishable, supposedly due to the Brownian motion. For flow rates above 50 μl/min our acquisition rate doesn’t get enough sampling information, as the decorrelation time gets too low. These results indicate that Speckle based techniques may be used to get quantitative information of flow in OCT samples, which can be used to assist in many diagnostics modalities, as well as map such flow regions.
光学相干层析成像(OCT)是一种无创的高分辨率成像技术,广泛应用于体内。尽管如此,OCT容易产生斑点,这是一种降低OCT信号的颗粒噪声。然而,散斑统计可以揭示有关其起源的散射体的信息。这一事实被诸如散斑方差- oct (SVOCT)之类的技术所利用。然而,SVOCT不能提供定量信息,这是基于散斑技术在OCT上使用的一个主要缺点。在本工作中,我们解决了这个问题,提出了一种基于自相关的OCT信号中散斑分析的新方法。我们将信号去相关时间的变化与流速的变化联系起来。预计更大的速度会导致更短的去相关时间。为了验证这一点,以不同的速度泵送牛奶通过微通道,并以8 kHz的采样率计算微通道中心单个点的去相关时间。我们的结果表明,当流速大于1 μl/min时,可以将解相关时间与流速相关联,而低于该值的流速则无法区分,可能是由于布朗运动的原因。当流量大于50 μl/min时,由于去相关时间过低,我们的采集速率无法获得足够的采样信息。这些结果表明,基于斑点的技术可用于获得OCT样品中流量的定量信息,这些信息可用于辅助许多诊断模式,以及绘制此类流动区域。
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引用次数: 2
Asymmetry and irregularity border as discrimination factor between melanocytic lesions 不对称和不规则边界作为黑素细胞病变的鉴别因素
Pub Date : 2015-06-19 DOI: 10.1117/12.2186180
David Sbrissa, S. Pratavieira, A. G. Salvio, C. Kurachi, V. Bagnato, L. F. Costa, G. Travieso
Image processing tools have been widely used in systems supporting medical diagnosis. The use of mobile devices for the diagnosis of melanoma can assist doctors and improve their diagnosis of a melanocytic lesion. This study proposes a method of image analysis for melanoma discrimination from other types of melanocytic lesions, such as regular and atypical nevi. The process is based on extracting features related with asymmetry and border irregularity. It were collected 104 images, from medical database of two years. The images were obtained with standard digital cameras without lighting and scale control. Metrics relating to the characteristics of shape, asymmetry and curvature of the contour were extracted from segmented images. Linear Discriminant Analysis was performed for dimensionality reduction and data visualization. Segmentation results showed good efficiency in the process, with approximately 88:5% accuracy. Validation results presents sensibility and specificity 85% and 70% for melanoma detection, respectively.
图像处理工具已广泛应用于支持医学诊断的系统中。使用移动设备诊断黑色素瘤可以帮助医生并提高他们对黑色素细胞病变的诊断。本研究提出了一种图像分析方法,用于黑色素瘤与其他类型的黑色素细胞病变(如常规和非典型痣)的区分。该过程是基于提取与不对称和边界不规则相关的特征。从两年的医学数据库中收集了104张图像。图像是在没有照明和比例控制的标准数码相机上获得的。从分割后的图像中提取与轮廓形状、不对称和曲率特征相关的度量。采用线性判别分析进行降维和数据可视化。结果表明,分割效果良好,准确率约为88:5%。验证结果显示,检测黑色素瘤的敏感性和特异性分别为85%和70%。
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引用次数: 1
EGFR-specific nanoprobe biodistribution in mouse models egfr特异性纳米探针在小鼠模型中的生物分布
Pub Date : 2015-06-19 DOI: 10.1117/12.2180997
Samia A. Fashir, M. Castilho, Michael A. Hupman, Christopher L. D. Lee, L. Raniero, I. Alwayn, K. Hewitt
Nanotechnology offers a targeted approach to both imaging and treatment of cancer, the leading cause of death worldwide. Previous studies have found nanoparticles with a wide variety of coatings initiate an immune response leading to sequestration in the liver and spleen. In an effort to find a nanoparticle platform which does not elicit an immune response we created 43/44 nm gold or silver nanoparticles coated with biomolecules normally produced by the body, α-lipoic acid and the Epidermal Growth Factor (EGF), and have used mass spectroscopy to determine their biodistribution in mouse models, 24 hours following tail vein injection. Relative to controls, mouse EGF (mEGF) coated silver and gold nanoprobes are found at reduced levels in the liver and spleen. mEGF coated gold nanoprobes on the other hand do not appear to elicit any immune response, as they are found at background levels in these organs. As a result they should remain in circulation for longer and accumulate at high levels in tumors by the enhanced permeability retention (EPR) effect.
纳米技术为癌症的成像和治疗提供了一种有针对性的方法,癌症是世界范围内死亡的主要原因。先前的研究发现,具有多种涂层的纳米颗粒会引发免疫反应,导致肝脏和脾脏的隔离。为了寻找一种不会引起免疫反应的纳米颗粒平台,我们创造了43/44 nm的金或银纳米颗粒,涂覆了通常由身体产生的生物分子,α-硫辛酸和表皮生长因子(EGF),并使用质谱法确定了它们在小鼠模型中的生物分布,在尾静脉注射后24小时。与对照组相比,小鼠表皮生长因子(mEGF)包裹的银和金纳米探针在肝脏和脾脏中的水平降低。另一方面,mEGF包覆的金纳米探针似乎不会引起任何免疫反应,因为它们在这些器官中处于背景水平。因此,它们应该在循环中停留更长时间,并通过增强的渗透性保留(EPR)效应在肿瘤中以高水平积累。
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引用次数: 0
Monolayer to MTS: using SEM, HIM, TEM and SERS to compare morphology, nanosensor uptake and redox potential in MCF7 cells 单层到MTS:利用SEM, HIM, TEM和SERS比较MCF7细胞的形态学,纳米传感器的摄取和氧化还原电位
Pub Date : 2015-06-19 DOI: 10.1117/12.2180944
Lauren E. Jamieson, A. P. Bell, David J. Harrison, Colin Campbell
Cellular redox potential is important for the control and regulation of a vast number of processes occurring in cells. When the fine redox potential balance within cells is disturbed it can have serious consequences such as the initiation or progression of disease. It is thought that a redox gradient develops in cancer tumours where the peripheral regions are well oxygenated and internal regions, further from vascular blood supply, become starved of oxygen and hypoxic. This makes treatment of these areas more challenging as, for example, radiotherapy relies on the presence of oxygen. Currently techniques for quantitative analysis of redox gradients are limited. Surface enhanced Raman scattering (SERS) nanosensors (NS) have been used to detect redox potential in a quantitative manner in monolayer cultured cells with many advantages over other techniques. This technique has considerable potential for use in multicellular tumour spheroids (MTS) – a three dimensional (3D) cell model which better mimics the tumour environment and gradients that develop. MTS are a more realistic model of the in vivo cellular morphology and environment and are becoming an increasingly popular in vitro model, replacing traditional monolayer culture. Imaging techniques such as transmission electron microscopy (TEM), scanning electron microscopy (SEM) and helium ion microscopy (HIM) were used to investigate differences in morphology and NS uptake in monolayer culture compared to MTS. After confirming NS uptake, the first SERS measurements revealing quantitative information on redox potential in MTS were performed.
细胞氧化还原电位对细胞中发生的大量过程的控制和调节是重要的。当细胞内的精细氧化还原电位平衡被扰乱时,可能会产生严重的后果,如疾病的开始或进展。据认为,在癌症肿瘤中,当外周区域氧合良好,而远离血管血液供应的内部区域缺氧和缺氧时,氧化还原梯度就会产生。这使得这些区域的治疗更具挑战性,例如,放射治疗依赖于氧气的存在。目前定量分析氧化还原梯度的技术是有限的。表面增强拉曼散射(SERS)纳米传感器(NS)被用于定量检测单层培养细胞的氧化还原电位,与其他技术相比具有许多优点。该技术在多细胞肿瘤球体(MTS)中具有相当大的应用潜力,这是一种三维(3D)细胞模型,可以更好地模拟肿瘤环境和发展的梯度。MTS是一种更真实的体内细胞形态和环境模型,并且正在成为越来越受欢迎的体外模型,取代传统的单层培养。利用透射电子显微镜(TEM)、扫描电子显微镜(SEM)和氦离子显微镜(HIM)等成像技术研究了单层培养与MTS在形态学和NS摄取方面的差异,在确认NS摄取后,进行了第一次SERS测量,揭示了MTS氧化还原电位的定量信息。
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引用次数: 3
Evaluation of eye tissue elasticity by means of sound propagation speed measuring in vivo 用体内声传播速度测量法评价眼组织弹性
Pub Date : 2015-06-19 DOI: 10.1117/12.2179598
J. Crispim, Adriano Bogar, N. Allemann, J. C. C. Neto, W. Chamon
Introduction: To date, it has never been demonstrated the propagation sound speed in human corneas and lens in vivo. With the advent of Optical Coherence Tomography (OCT), it became possible to determine the dimensions of the ocular tissues without the interference of sound propagation speed and to use this information to define the real propagation sound speed for each patient and individualized structure. Aim: To determine the sound propagation speed in the cornea and lens from patients that theoretically exhibits differences in tissue elasticity (normal corneas and keratoconus, corneas of young and elderly patients, in addition to clear crystalline lens from young and elderly patients with cataract). Then, relate the determined velocity in each group with the expected tissue elasticity of the cornea and lens. Methods: We studied 100 eyes from 50 patients: 50 with keratoconus and no cataract and 50 with cataract and no corneal changes. All patients measured corneal and lens thickness by ultrasound methods (Ultrasonic Biomicroscopy - UBM and Ultrasonic Pachymetry - USP) and by OCT (RTVue®, Lenstar® and Visante®), then were divided into 2 groups: Group 1 (Cornea) analyzed the central corneal thickness (UBM, USP, RTVue®, Visante®, Lenstar®); Group 2 (Lens) analyzed the axial thickness of the lens (UBM and Lenstar®). Based on standard ultrasonic speed from USP (1640 m/s) and UBM (1548 m/s), we calculated the real sound propagation speed in each tissue. Results: Based on USP, the corneal sound speed on control group (1616 m/s) was faster than on keratoconus group (1547 m/s) (P < 0.0001). Based on UBM, the lens sound speed on cataract group (1664 m/s) was faster that on control group (1605 m/s) (P < 0.0001). Discussion: It is known that sound propagates faster in materials with lower elasticity. We found that the sound speed on keratoconic corneas (high elasticity) was slower and on cataract lens (lower elasticity) was faster than normal corneas and lens in vivo.
迄今为止,还没有在人体角膜和晶状体中证明声音的传播速度。随着光学相干断层扫描(OCT)的出现,在不受声音传播速度干扰的情况下确定眼部组织的尺寸成为可能,并利用这些信息来定义每个患者的真实传播声速和个性化结构。目的:测定组织弹性理论上存在差异的患者(正常角膜和圆锥角膜,青年和老年患者的角膜,以及青年和老年白内障患者的透明晶状体)角膜和晶状体中的声音传播速度。然后,将各组确定的速度与角膜和晶状体的预期组织弹性联系起来。方法:对50例患者100只眼进行研究,其中50例为圆锥角膜无白内障,50例为白内障无角膜改变。所有患者均采用超声方法(超声生物显微镜- UBM和超声厚测法- USP)和OCT (RTVue®,Lenstar®和Visante®)测量角膜和晶状体厚度,然后分为2组:1组(角膜)分析角膜中央厚度(UBM, USP, RTVue®,Visante®,Lenstar®);第二组(Lens)分析晶状体(UBM和Lenstar®)的轴向厚度。根据USP (1640 m/s)和UBM (1548 m/s)的标准超声速度,我们计算了每个组织中的真实声音传播速度。结果:基于USP,对照组角膜声速(1616 m/s)快于圆锥角膜组(1547 m/s) (P < 0.0001)。基于UBM,白内障组晶状体声速(1664 m/s)明显快于对照组(1605 m/s) (P < 0.0001)。讨论:众所周知,声音在弹性较低的材料中传播得更快。实验结果表明,与正常角膜和晶状体相比,在高弹性角膜上声速较慢,在低弹性白内障晶状体上声速较快。
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引用次数: 0
Fabry-Perot micro-structured polymer optical fibre sensors for opto-acoustic endoscopy 用于光声内窥镜的Fabry-Perot微结构聚合物光纤传感器
Pub Date : 2015-06-19 DOI: 10.1117/12.2181095
C. Broadway, D. Gallego, G. Woyessa, A. Pospori, G. Carpintero, O. Bang, K. Sugden, H. Lamela
Opto-Acoustic Endoscopy (OAE) requires sensors with a high sensitivity and small physical dimensions in order to facilitate integration into an endoscope of less than 1mm in diameter. We present fibre Bragg grating (FBG) and Fabry- Perot intrinsic fibre sensors for ultrasound detection. We present a structure profile characterisation setup to analyse tune the fibre sensors in preparation for ultrasonic detection. We evaluate the suitability of the different structures and grating parameters for ultrasonic sensing. By analysing the prepared gratings, we enable the optimisation of the profile and a simplification of the detection regime for an optimal interferometric OAE configuration.
光声内窥镜(OAE)需要具有高灵敏度和小物理尺寸的传感器,以便于集成到直径小于1mm的内窥镜中。我们提出了光纤布拉格光栅(FBG)和法布里-珀罗本征光纤传感器用于超声检测。我们提出了一种结构轮廓表征设置来分析调谐光纤传感器,为超声波检测做准备。我们评估了不同结构和光栅参数对超声传感的适用性。通过分析制备的光栅,我们能够优化轮廓并简化检测制度,以获得最佳的干涉声发射配置。
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引用次数: 10
Identification of atherosclerosis using aminolevulinic gold nanoparticle assay in fecal specimens 用粪便标本中的氨基乙酰金纳米颗粒法鉴定动脉粥样硬化
Pub Date : 2015-06-19 DOI: 10.1117/12.2180916
K. D. O. Gonçalves, Mônica N. da Silva, Lilia Coronato Courrol
The atheromatous plaques exhibit an accumulation of protoporphyrin IX, or PpIX, which is transferred to the feces. In this work it was associated a precursor of the PpIX, the 5-aminolevulinic acid, ALA, with gold nanoparticles (ALA:AuNps). The objective was verify the possibility to use ALA:AuNPs as a diagnosis agent for atherosclerosis. ALA:AuNps were synthesized mixing ALA with Tetrachloroauric(III) acid in miliQ water solution followed by photoreduction with light from a Xenon lamp. A total of 22 Male New Zealand rabbits were divided into 3 groups: control group (CG) where animals received normal diet, control group with ALA (CGALA ) and Experimental Group with ALA:AuNPs ( EGALAAu ) in which the animals received a diet with 1% cholesterol. Measurements of the emission intensity of extracted porphyrins from the feces in the region between 575 and 725 nm were done. An increase in the feces porphyrin emission after ALA and ALA:AuNPs administration was observed.
动脉粥样斑块表现为原卟啉IX的积累,或PpIX,它被转移到粪便中。在这项工作中,它与PpIX的前体,5-氨基乙酰丙酸,ALA,金纳米粒子(ALA:AuNps)相关联。目的是验证使用ALA:AuNPs作为动脉粥样硬化诊断试剂的可能性。ALA:将ALA与四氯金(III)酸在浓溶液中混合,然后用氙灯光还原合成AuNps。将22只雄性新西兰兔分为3组:对照组(CG)饲喂正常饲粮,对照组(CGALA)饲喂ALA:AuNPs饲粮,试验组(EGALAAu)饲喂1%胆固醇饲粮。测定了粪便中提取的卟啉在575 ~ 725 nm范围内的发射强度。观察ALA和ALA:AuNPs给药后粪便卟啉排放量增加。
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引用次数: 1
A compact multi-wavelength optoacoustic system based on high-power diode lasers for characterization of double-walled carbon nanotubes (DWCNTs) for biomedical applications 基于高功率二极管激光器的紧凑多波长光声系统,用于生物医学应用的双壁碳纳米管(DWCNTs)的表征
Pub Date : 2015-06-19 DOI: 10.1117/12.2181021
L. Leggio, O. de Varona, P. Escudero, Guillermo Carpintero Del Barrio, M. Osiński, Horacio Lamela Rivera
During the last decade, Optoacoustic Imaging (OAI), or Optoacoustic Tomography (OAT), has evolved as a novel imaging technique based on the generation of ultrasound waves with laser light. OAI may become a valid alternative to techniques currently used for the detection of diseases at their early stages. It has been shown that OAI combines the high contrast of optical imaging techniques with high spatial resolution of ultrasound systems in deep tissues. In this way, the use of nontoxic biodegradable contrast agents that mark the presence of diseases in near-infrared (NIR) wavelengths range (0.75–1.4 um) has been considered. The presence of carcinomas and harmful microorganisms can be revealed by means of the fluorescence effect exhibited by biopolymer nanoparticles. A different approach is to use carbon nanotubes (CNTs) which are a contrast agent in NIR range due to their absorption characteristics in the range between 800 to 1200 nm. We report a multi-wavelength (870 and 905 nm) laser diode–based optoacoustic (OA) system generating ultrasound signals from a double-walled carbon nanotubes (DWCNTs) solution arranged inside a tissue-like phantom, mimicking the scattering of a biological soft tissue. Optoacoustic signals obtained with DWCNTs inclusions within a tissue-like phantom are compared with the case of ink-filled inclusions, with the aim to assess their absorption. These measurements are done at both 870 and 905 nm, by using high power laser diodes as light sources. The results show that the absorption is relatively high when the inclusion is filled with ink and appreciable with DWCNTs.
在过去的十年中,光声成像(OAI)或光声断层扫描(OAT)已经发展成为一种基于激光产生超声波的新型成像技术。OAI可能成为目前用于在疾病早期阶段检测的技术的有效替代方法。研究表明,OAI结合了光学成像技术的高对比度和超声系统在深部组织中的高空间分辨率。因此,考虑使用无毒的可生物降解造影剂,在近红外(NIR)波长范围(0.75-1.4 um)内标记疾病的存在。利用生物聚合物纳米粒子的荧光效应可以发现肿瘤和有害微生物的存在。另一种不同的方法是使用碳纳米管(CNTs),由于其在800至1200 nm范围内的吸收特性,碳纳米管是近红外范围内的造影剂。我们报道了一种多波长(870和905 nm)基于激光二极管的光声(OA)系统,该系统从排列在组织样幻影内的双壁碳纳米管(DWCNTs)溶液中产生超声信号,模拟生物软组织的散射。将类组织模体中含有DWCNTs内含物的光声信号与墨水填充内含物的光声信号进行比较,以评估其吸收情况。这些测量是在870和905纳米,通过使用高功率激光二极管作为光源。结果表明,当包裹体中填充油墨时,吸收率相对较高,而填充DWCNTs时吸收率较高。
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引用次数: 2
Automatic analysis of microscopic images of red blood cell aggregates 红细胞聚集体显微图像的自动分析
Pub Date : 2015-06-19 DOI: 10.1117/12.2181110
P. Menichini, Mónica G. Larese, B. Riquelme
Red blood cell aggregation is one of the most important factors in blood viscosity at stasis or at very low rates of flow. The basic structure of aggregates is a linear array of cell commonly termed as rouleaux. Enhanced or abnormal aggregation is seen in clinical conditions, such as diabetes and hypertension, producing alterations in the microcirculation, some of which can be analyzed through the characterization of aggregated cells. Frequently, image processing and analysis for the characterization of RBC aggregation were done manually or semi-automatically using interactive tools. We propose a system that processes images of RBC aggregation and automatically obtains the characterization and quantification of the different types of RBC aggregates. Present technique could be interesting to perform the adaptation as a routine used in hemorheological and Clinical Biochemistry Laboratories because this automatic method is rapid, efficient and economical, and at the same time independent of the user performing the analysis (repeatability of the analysis).
红细胞聚集是血液在停滞或非常低的流动速率下粘度的最重要因素之一。聚集体的基本结构是细胞的线性阵列,通常称为rouleaux。在临床情况下,如糖尿病和高血压,可以看到增强或异常聚集,产生微循环的改变,其中一些可以通过聚集细胞的特征来分析。通常,RBC聚集特征的图像处理和分析是使用交互式工具手动或半自动完成的。我们提出了一个系统,处理图像的红细胞聚集和自动获得表征和定量的不同类型的红细胞聚集。由于这种自动方法快速、高效、经济,同时独立于用户执行分析(分析的可重复性),因此目前的技术可能会成为血液流变学和临床生物化学实验室常规使用的一种有趣的方法。
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引用次数: 2
Diffuse reflectance imaging to predict heterogeneities in turbid optical phantom 漫反射成像预测混浊光体的非均匀性
Pub Date : 2015-06-19 DOI: 10.1117/12.2180985
T. C. Fortunato, C. Kurachi, V. Bagnato, L. Moriyama
The use of light as a therapeutic agent has been the subject of several studies; however, the dosimetry for its clinical application is still based on empirical data. The propagation of light in biological tissues depends on the tissue optical properties, and these properties may vary among people, tissues and sites, making it diffcult to establish dosimetry. In this context, the research for methods to determine the spatial distribution of light in individual biological tissues becomes essential, allowing the individual dosimetry. This study aims to image the diffuse reflectance at the optical phantom surface to infer the spatial distribution of light inside a phantom when an absorbing obstacle is present. Red laser were used as light source on solid turbid optical phantom; a small black sphere was used as absorbing obstacle. It is important to know, in real time and in a non-invasive way, about the existence of heterogeneities that may compromise the light propagation inside a biological tissue, so that the light dosimetry might be properly established.
利用光作为治疗剂一直是几项研究的主题;然而,其临床应用的剂量学仍以经验数据为基础。光在生物组织中的传播取决于组织的光学特性,而这些特性在不同的人、不同的组织和不同的部位可能不同,这使得建立剂量学变得困难。在这种背景下,研究确定光在个体生物组织中的空间分布的方法变得至关重要,从而实现个体剂量学。本研究的目的是对光学幻影表面的漫反射进行成像,以推断当存在吸收障碍时,光在幻影内部的空间分布。采用红色激光作为光源,对固体浑浊光体进行了研究;一个黑色的小球体被用作吸收障碍。实时和非侵入性地了解可能影响光在生物组织内传播的异质性的存在是很重要的,这样才能正确地建立光剂量学。
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引用次数: 2
期刊
Biophotonics South America
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