Pub Date : 2024-05-26DOI: 10.1016/j.ijms.2024.117268
Boone M. Prentice
Imaging mass spectrometry has emerged as a powerful tool to map the spatial distributions of lipids and metabolites in biological tissues. However, these analyses are challenged by the multitude of isobaric (i.e., same nominal mass) and isomeric compounds present in most samples. Failure to adequately separate these compounds results in inaccurate or incomplete chemical identifications and produces composite images of spatial distribution arising from multiple compounds. A number of techniques have been developed to more completely resolve and identify this complex chemical milieu. These include methods that rely on condensed-phase chemical derivatization and gas-phase ion chemistry, or some combination thereof. This Young Scientist Feature focuses on summarizing the analytical figures of merit of these tools, highlighting their relative speeds, limits of detection, molecular specificities, and eases-of-use. It will also include current challenges and future perspectives for resolving structural isomers in imaging mass spectrometry experiments.
{"title":"An analytical evaluation of tools for lipid isomer differentiation in imaging mass spectrometry","authors":"Boone M. Prentice","doi":"10.1016/j.ijms.2024.117268","DOIUrl":"https://doi.org/10.1016/j.ijms.2024.117268","url":null,"abstract":"<div><p>Imaging mass spectrometry has emerged as a powerful tool to map the spatial distributions of lipids and metabolites in biological tissues. However, these analyses are challenged by the multitude of isobaric (<em>i.e.</em>, same nominal mass) and isomeric compounds present in most samples. Failure to adequately separate these compounds results in inaccurate or incomplete chemical identifications and produces composite images of spatial distribution arising from multiple compounds. A number of techniques have been developed to more completely resolve and identify this complex chemical milieu. These include methods that rely on condensed-phase chemical derivatization and gas-phase ion chemistry, or some combination thereof. This Young Scientist Feature focuses on summarizing the analytical figures of merit of these tools, highlighting their relative speeds, limits of detection, molecular specificities, and eases-of-use. It will also include current challenges and future perspectives for resolving structural isomers in imaging mass spectrometry experiments.</p></div>","PeriodicalId":338,"journal":{"name":"International Journal of Mass Spectrometry","volume":"502 ","pages":"Article 117268"},"PeriodicalIF":1.8,"publicationDate":"2024-05-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141241470","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-17DOI: 10.1016/j.ijms.2024.117265
Naizhen Zhang, Dongyang Huo, Zeqiu Qi, Ping Xiao, Jingxin Zhao, Ge Liu, Jun He
The Sm–Nd isotopic system has been broadly utilized for dating and tracing in earth and planetary sciences. However, low Nd+ ionization efficiency permanently hinders precise and accurate measurements on small amounts of Nd samples. So far, isotopic measurement of micro-amount Nd sample via thermal ionization mass spectrometry (TIMS) Nd+ mode was mostly performed on Nd reference solutions, but less on natural rock or mineral samples. In the present study, analytical procedures to measure isotopic composition via the TIMS Nd+ mode were designed for natural rock powders by using 1–5 ng pure Nd. The analytical technique was refined through low-blank sample digestion, small-column chemistry for Nd extraction from matrix elements, loading Nd using purified H3PO4 solution, and careful heating of filaments before data acquisition. Measurements on small Nd amounts (1 ng–5 ng) of either the JNdi-1 reference solution or four reference rock powders yielded satisfactory results of 143Nd/144Nd value with respect to precision and accuracy. The analytical results agree well with the recommendation values of the reference materials within analytical errors and the internal precision is better than ±0.005 % (2RSE). When using 1 ng or 2 ng Nd amounts, 144Nd ion flow can remain stable in a signal intensity of >100 mV, and without the assistance of an additional ionization enhancer. Therefore, the analytical procedure, featured by low procedural blank (about 10–22 pg), high Nd+ ionization efficiency, and easy operation, has broad prospects for the application of Nd isotope in single-grain minerals or micro-samples.
{"title":"Micro-sample Nd isotopic measurement on reference rock powders via the thermal ionization mass spectrometer Nd+ mode","authors":"Naizhen Zhang, Dongyang Huo, Zeqiu Qi, Ping Xiao, Jingxin Zhao, Ge Liu, Jun He","doi":"10.1016/j.ijms.2024.117265","DOIUrl":"10.1016/j.ijms.2024.117265","url":null,"abstract":"<div><p>The Sm–Nd isotopic system has been broadly utilized for dating and tracing in earth and planetary sciences. However, low Nd<sup>+</sup> ionization efficiency permanently hinders precise and accurate measurements on small amounts of Nd samples. So far, isotopic measurement of micro-amount Nd sample via thermal ionization mass spectrometry (TIMS) Nd<sup>+</sup> mode was mostly performed on Nd reference solutions, but less on natural rock or mineral samples. In the present study, analytical procedures to measure isotopic composition via the TIMS Nd<sup>+</sup> mode were designed for natural rock powders by using 1–5 ng pure Nd. The analytical technique was refined through low-blank sample digestion, small-column chemistry for Nd extraction from matrix elements, loading Nd using purified H<sub>3</sub>PO<sub>4</sub> solution, and careful heating of filaments before data acquisition. Measurements on small Nd amounts (1 ng–5 ng) of either the JNdi-1 reference solution or four reference rock powders yielded satisfactory results of <sup>143</sup>Nd/<sup>144</sup>Nd value with respect to precision and accuracy. The analytical results agree well with the recommendation values of the reference materials within analytical errors and the internal precision is better than ±0.005 % (2RSE). When using 1 ng or 2 ng Nd amounts, <sup>144</sup>Nd ion flow can remain stable in a signal intensity of >100 mV, and without the assistance of an additional ionization enhancer. Therefore, the analytical procedure, featured by low procedural blank (about 10–22 pg), high Nd<sup>+</sup> ionization efficiency, and easy operation, has broad prospects for the application of Nd isotope in single-grain minerals or micro-samples.</p></div>","PeriodicalId":338,"journal":{"name":"International Journal of Mass Spectrometry","volume":"502 ","pages":"Article 117265"},"PeriodicalIF":1.8,"publicationDate":"2024-05-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141045502","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The Chemical Weapons Convention (CWC) is a science-based international treaty for the disarmament and non-proliferation of chemical weapons. However, reference Orgaization for prohibition of chemical weapons (OPCW) central analytical database (OCAD) of structures with mass spectra (MS) and retention indices (RI) includes only minor part of all possible chemical species defined in the Schedules of CWC. In this work we employed OCAD in silico augmentation based on chemoinformatics approach for chemical structures enumeration, MS data generation based on message passing neural network and based on P-alkyl molecular pairs RI prediction to support the verification activities as provided for in the CWC. Enumerated 879 noncyclic and 5270 monocyclic alcohols became the basis for generating hundreds of thousands molecules of Schedule 1 toxic chemicals like Sarin, Tabun, VX and Novichok. Trained on ordinary and neutral loss electron ionization mass spectrometry (EI-MS) a message-passing neural network (MPNN) outperformed other quantum chemistry and machine learning methods. Generated by this MPNN in silico EI-MS are very similar to the library's spectra and allowed to reach desired match factor above 800 within a scale of 0–1000. Statistical data for molecular pairs based on P-alkyl fragments was collected and used to predict RIs within desired 20 RI window for some toxic chemicals of Schedule 1.A.01, for which in the current OCAD version RIs are absent.
{"title":"In silico structures, mass spectra and retention indices database development for purposes of chemical weapons convention","authors":"Albert Kireev , Sergey Osipenko , Liudmila Borisova , Evgeny Nikolaev , Yury Kostyukevich","doi":"10.1016/j.ijms.2024.117250","DOIUrl":"https://doi.org/10.1016/j.ijms.2024.117250","url":null,"abstract":"<div><p>The Chemical Weapons Convention (CWC) is a science-based international treaty for the disarmament and non-proliferation of chemical weapons. However, reference Orgaization for prohibition of chemical weapons (OPCW) central analytical database (OCAD) of structures with mass spectra (MS) and retention indices (RI) includes only minor part of all possible chemical species defined in the Schedules of CWC. In this work we employed OCAD <em>in silico</em> augmentation based on chemoinformatics approach for chemical structures enumeration, MS data generation based on message passing neural network and based on P-alkyl molecular pairs RI prediction to support the verification activities as provided for in the CWC. Enumerated 879 noncyclic and 5270 monocyclic alcohols became the basis for generating hundreds of thousands molecules of Schedule 1 toxic chemicals like Sarin, Tabun, VX and Novichok. Trained on ordinary and neutral loss electron ionization mass spectrometry (EI-MS) a message-passing neural network (MPNN) outperformed other quantum chemistry and machine learning methods. Generated by this MPNN <em>in silico</em> EI-MS are very similar to the library's spectra and allowed to reach desired match factor above 800 within a scale of 0–1000. Statistical data for molecular pairs based on P-alkyl fragments was collected and used to predict RIs within desired 20 RI window for some toxic chemicals of Schedule 1.A.01, for which in the current OCAD version RIs are absent.</p></div>","PeriodicalId":338,"journal":{"name":"International Journal of Mass Spectrometry","volume":"501 ","pages":"Article 117250"},"PeriodicalIF":1.8,"publicationDate":"2024-04-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140815813","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-04-25DOI: 10.1016/j.ijms.2024.117258
Małgorzata Kasperkowiak , Klaudia Antczak , Wojciech Jankowski , Marcin Hoffmann , Błażej Gierczyk , Rafał Frański
For thousands years Ephedrae herba has been used in traditional Chinese herbal medicine. Its main bioactive constituents are ephedrine and pseudoephedrine. Nowadays, these alkaloids have found application in various clinical treatments, as sports-enhancing drugs and for the illicit production of amphetamine-like drugs. Ephedrine and pseudoephedrine are diastereomers, and because of their high polarity and similar pKa values, their chromatographic separation may be a challenge. In this study a possible application of direct infusion mass spectrometry and direct infusion tandem mass spectrometry has been proposed for differentiation of ephedrine and pseudoephedrine as well as the relative determination of the contents of these compounds in a mixture. At low collision energy condition, the ratio of relative abundances of ions [M+H–H2O]+ and [M+H]+ permit distinction of the analyzed diastereomers, and enable evaluation of their relative content in a mixture with no need of chromatographic separation. The performed quantum chemical calculation have shown that protonated pseudoephedrine contains stronger hydrogen bond than protonated ephedrine, which can justify the observed higher relative abundance of ion [M+H–H2O]+ in the mass spectrum of pseudoephedrine, in comparison to that of ephedrine.
{"title":"Direct infusion mass spectrometric analysis of ephedrine and pseudoephedrine","authors":"Małgorzata Kasperkowiak , Klaudia Antczak , Wojciech Jankowski , Marcin Hoffmann , Błażej Gierczyk , Rafał Frański","doi":"10.1016/j.ijms.2024.117258","DOIUrl":"https://doi.org/10.1016/j.ijms.2024.117258","url":null,"abstract":"<div><p>For thousands years <em>Ephedrae herba</em> has been used in traditional Chinese herbal medicine. Its main bioactive constituents are ephedrine and pseudoephedrine. Nowadays, these alkaloids have found application in various clinical treatments, as sports-enhancing drugs and for the illicit production of amphetamine-like drugs. Ephedrine and pseudoephedrine are diastereomers, and because of their high polarity and similar pK<sub>a</sub> values, their chromatographic separation may be a challenge. In this study a possible application of direct infusion mass spectrometry and direct infusion tandem mass spectrometry has been proposed for differentiation of ephedrine and pseudoephedrine as well as the relative determination of the contents of these compounds in a mixture. At low collision energy condition, the ratio of relative abundances of ions [M+H–H<sub>2</sub>O]<sup>+</sup> and [M+H]<sup>+</sup> permit distinction of the analyzed diastereomers, and enable evaluation of their relative content in a mixture with no need of chromatographic separation. The performed quantum chemical calculation have shown that protonated pseudoephedrine contains stronger hydrogen bond than protonated ephedrine, which can justify the observed higher relative abundance of ion [M+H–H<sub>2</sub>O]<sup>+</sup> in the mass spectrum of pseudoephedrine, in comparison to that of ephedrine.</p></div>","PeriodicalId":338,"journal":{"name":"International Journal of Mass Spectrometry","volume":"501 ","pages":"Article 117258"},"PeriodicalIF":1.8,"publicationDate":"2024-04-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140650276","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-04-10DOI: 10.1016/j.ijms.2024.117249
Julia Laskin
{"title":"Editorial – Special issue honoring the recipients of the 2022 Thomson Medal: Lidia Gall and Vicki Wysocki","authors":"Julia Laskin","doi":"10.1016/j.ijms.2024.117249","DOIUrl":"https://doi.org/10.1016/j.ijms.2024.117249","url":null,"abstract":"","PeriodicalId":338,"journal":{"name":"International Journal of Mass Spectrometry","volume":"500 ","pages":"Article 117249"},"PeriodicalIF":1.8,"publicationDate":"2024-04-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140542371","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-04-03DOI: 10.1016/j.ijms.2024.117221
Sharmila I. Thenuwara , Judy A. Westrick , Dragan Isailovic
Degradation of cyclic cyanotoxins microcystins (MCs) leads to the formation of linear MC heptapeptides. Herein, several linear MCs were identified by UHPLC-ESI-Orbitrap-MS/MS in water samples collected from Lake Erie shore during the cyanobacterial harmful algal bloom (cyanoHAB) 2022. Consequently, novel in-source fragments of linear MCs, which contain a modified Adda moiety and C-terminal arginine (Arg), were discovered and their structures were putatively assigned using high-resolution MS and MS/MS data. The fragment ion at m/z 175.11 was used as the major diagnostic ion to identify whether a MC is linear with Arg at the C-terminus. The distinguishing feature of the novel linear MC in-source fragments is the absence of the characteristic Adda fragment ion m/z 135.08. However, these contain other fragment ions formed by the remaining part of the Adda, such as m/z 135.11 and m/z 163.11. In-source fragments that were formed when C-terminal Arg-containing linear MC precursor ions lost C6H5-CH=CH(OCH3) and NH3 from the Adda moiety confirmed the presence of linear MC-RR, MC-LR, [Asp3]MC-LR, MC-YR, MC-HilR, MC-HtyR, MC-FR, and MC-HphR in Lake Erie water. The loss of specific neutral molecules during ESI assisted the identification of linear MCs and helps avoiding the missannotation of in-source fragments as precursor ions resulting from MC degradation products or other precursor molecules.
环状蓝藻毒素微囊藻毒素(MC)降解后会形成线性 MC 七肽。本文利用超高效液相色谱-电喷雾离子交换-轨道rap-MS/MS技术,在2022年蓝藻有害藻华(cyanoHAB)期间从伊利湖湖岸采集的水样中鉴定了几种线性MCs。因此,我们发现了线性 MCs 的新源片段,其中包含修饰的 Adda 分子和 C 端精氨酸(Arg),并利用高分辨率 MS 和 MS/MS 数据推测了它们的结构。m/z 175.11 的碎片离子被用作主要的诊断离子,以确定 MC 是否是线性的,其 C 端是否含有 Arg。新型线性 MC 源内碎片的显著特点是没有特征性 Adda 碎片离子 m/z 135.08。然而,这些片段含有 Adda 剩余部分形成的其他片段离子,如 m/z 135.11 和 m/z163.11。当含有 C 端 Arg 的线性 MC 前体离子失去 Adda 分子中的 C6H5-CH=CH(OCH3) 和 NH3 时形成的源内碎片证实了伊利湖水中存在线性 MC-RR、MC-LR、[Asp3]MC-LR、MC-YR、MC-HilR、MC-HtyR、MC-FR 和 MC-HphR。ESI过程中特定中性分子的损失有助于线性MC的鉴定,并有助于避免将源内片段误标为MC降解产物或其他前体分子产生的前体离子。
{"title":"Novel in-source fragments used to identify linear microcystins with C-terminal arginine by UHPLC-ESI-MS/MS","authors":"Sharmila I. Thenuwara , Judy A. Westrick , Dragan Isailovic","doi":"10.1016/j.ijms.2024.117221","DOIUrl":"https://doi.org/10.1016/j.ijms.2024.117221","url":null,"abstract":"<div><p>Degradation of cyclic cyanotoxins microcystins (MCs) leads to the formation of linear MC heptapeptides. Herein, several linear MCs were identified by UHPLC-ESI-Orbitrap-MS/MS in water samples collected from Lake Erie shore during the cyanobacterial harmful algal bloom (cyanoHAB) 2022. Consequently, novel in-source fragments of linear MCs, which contain a modified Adda moiety and C-terminal arginine (Arg), were discovered and their structures were putatively assigned using high-resolution MS and MS/MS data. The fragment ion at <em>m</em>/<em>z</em> 175.11 was used as the major diagnostic ion to identify whether a MC is linear with Arg at the C-terminus. The distinguishing feature of the novel linear MC in-source fragments is the absence of the characteristic Adda fragment ion <em>m</em>/<em>z</em> 135.08. However, these contain other fragment ions formed by the remaining part of the Adda, such as <em>m</em>/<em>z</em> 135.11 and <em>m</em>/<em>z</em> 163.11. In-source fragments that were formed when C-terminal Arg-containing linear MC precursor ions lost C<sub>6</sub>H<sub>5</sub>-CH=CH(OCH<sub>3</sub>) and NH<sub>3</sub> from the Adda moiety confirmed the presence of linear MC-RR, MC-LR, [Asp<sup>3</sup>]MC-LR, MC-YR, MC-HilR, MC-HtyR, MC-FR, and MC-HphR in Lake Erie water. The loss of specific neutral molecules during ESI assisted the identification of linear MCs and helps avoiding the missannotation of in-source fragments as precursor ions resulting from MC degradation products or other precursor molecules.</p></div>","PeriodicalId":338,"journal":{"name":"International Journal of Mass Spectrometry","volume":"500 ","pages":"Article 117221"},"PeriodicalIF":1.8,"publicationDate":"2024-04-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140341379","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-04-02DOI: 10.1016/j.ijms.2024.117248
Weam A.O. Altalhi , Kimberly C. Fabijanczuk , Allan J. Canty , Scott A. McLuckey , Richard A.J. O'Hair
Gas-phase ion-ion reactions between the trication, [Yb(L)3]3+ (where L = N,N,N′,N′-tetramethylpyridine-2,6-dicarboxamide), and the tetraphenylborate anion, [BPh4]−, and its sodium bound dimer, [(BPh4)2Na]−, were examined to establish whether ion-pair formation and transmetalation from boron to ytterbium can occur. Ion clusters that were formed with the formal +3 oxidation state for the ytterbium metal centre include: the ion pair [Yb(III)(L)3][BPh4]2+ (m/z 578, (6a)); the ion triplet [Yb(III)(L)3][BPh4]2+ (m/z 1475, (7a)); and [Yb(III)(L)3(BPh4)3Na]+ (m/z 1817, (8a)). In addition, electron transfer from [BPh4]− to [Yb(L)3]3+ resulted in complexes in which the ytterbium metal centre is in the formal +2 oxidation state, which reacted further to yield the ion pairs: [Yb(II)(L)3][BPh4]+ (m/z 1156, (7b)); [Yb(II)(L)2][BPh4]+ (m/z 935, (8b)); and [Yb(II)(L)][BPh4]+ (m/z 714, (9b)). Selected ion pairs were mass isolated and subjected to collision-induced dissociation (CID) to examine if they underwent transmetalation from B to Yb. Most of the observed ytterbium(III) complexes were found to undergo transmetalation. Density functional theory (DFT) calculations were used to determine the energetics for the sequential ion-ion reactions associated with the formation of [Yb(II)(L)2][BPh4]+ as well as its fragmentation reactions via ligand loss (observed experimentally) versus transmetalation (not observed experimentally).
研究了三价离子[Yb(L)3]3+(其中 L = N,N,N′,N′-四甲基吡啶-2,6-二甲酰胺)与四苯基硼酸阴离子[BPh4]-及其钠结合二聚体[(BPh4)2Na]-之间的气相离子-离子反应,以确定离子对的形成以及从硼到镱的反金属化是否可能发生。以镱金属中心的形式+3氧化态形成的离子群包括:离子对[Yb(III)(L)3][BPh4]2+(m/z 578,(6a));三重离子[Yb(III)(L)3][BPh4]2+(m/z 1475,(7a));以及[Yb(III)(L)3(BPh4)3Na]+(m/z 1817,(8a))。此外,电子从[BPh4]-转移到[Yb(L)3]3+会产生络合物,其中的镱金属中心处于形式+2氧化态,进一步反应会产生离子对:[Yb(II)(L)3][BPh4]+(m/z 1156,(7b));[Yb(II)(L)2][BPh4]+(m/z 935,(8b));和[Yb(II)(L)][BPh4]+(m/z 714,(9b))。对所选离子对进行了质量分离和碰撞诱导解离 (CID),以检验它们是否发生了从 B 到 Yb 的跨金属化反应。结果发现,大多数观察到的镱(III)络合物都发生了转金属作用。密度泛函理论(DFT)计算用于确定与 [Yb(II)(L)2][BPh4]+ 的形成相关的离子-离子反应顺序以及通过配体损失(实验观察到)和反金属(实验未观察到)的碎裂反应的能量。
{"title":"Competition between transmetalation and electron transfer in the gas-phase reactions of ytterbium complex trications and the tetraphenylborate anion","authors":"Weam A.O. Altalhi , Kimberly C. Fabijanczuk , Allan J. Canty , Scott A. McLuckey , Richard A.J. O'Hair","doi":"10.1016/j.ijms.2024.117248","DOIUrl":"https://doi.org/10.1016/j.ijms.2024.117248","url":null,"abstract":"<div><p>Gas-phase ion-ion reactions between the trication, [Yb(L)<sub>3</sub>]<sup>3+</sup> (where L = N,N,N′,N′-tetramethylpyridine-2,6-dicarboxamide), and the tetraphenylborate anion, [BPh<sub>4</sub>]<sup>−</sup>, and its sodium bound dimer, [(BPh<sub>4</sub>)<sub>2</sub>Na]<sup>−</sup>, were examined to establish whether ion-pair formation and transmetalation from boron to ytterbium can occur. Ion clusters that were formed with the formal +3 oxidation state for the ytterbium metal centre include: the ion pair [Yb<sup>(III)</sup>(L)<sub>3</sub>][BPh<sub>4</sub>]<sup>2+</sup> (<em>m/z</em> 578, (<strong>6a</strong>)); the ion triplet [Yb<sup>(III)</sup>(L)<sub>3</sub>][BPh<sub>4</sub>]<sub>2</sub><sup>+</sup> (<em>m/z</em> 1475, (<strong>7a</strong>)); and [Yb<sup>(III)</sup>(L)<sub>3</sub>(BPh<sub>4</sub>)<sub>3</sub>Na]<sup>+</sup> (<em>m/z</em> 1817, (<strong>8a</strong>)). In addition, electron transfer from [BPh<sub>4</sub>]<sup>−</sup> to [Yb(L)<sub>3</sub>]<sup>3+</sup> resulted in complexes in which the ytterbium metal centre is in the formal +2 oxidation state, which reacted further to yield the ion pairs: [Yb<sup>(II)</sup>(L)<sub>3</sub>][BPh<sub>4</sub>]<sup>+</sup> (<em>m/z</em> 1156, (<strong>7b</strong>)); [Yb<sup>(II)</sup>(L)<sub>2</sub>][BPh<sub>4</sub>]<sup>+</sup> (<em>m/z</em> 935, (<strong>8b</strong>)); and [Yb<sup>(II)</sup>(L)][BPh<sub>4</sub>]<sup>+</sup> (<em>m/z</em> 714, (<strong>9b</strong>)). Selected ion pairs were mass isolated and subjected to collision-induced dissociation (CID) to examine if they underwent transmetalation from B to Yb. Most of the observed ytterbium(III) complexes were found to undergo transmetalation. Density functional theory (DFT) calculations were used to determine the energetics for the sequential ion-ion reactions associated with the formation of [Yb<sup>(II)</sup>(L)<sub>2</sub>][BPh<sub>4</sub>]<sup>+</sup> as well as its fragmentation reactions via ligand loss (observed experimentally) versus transmetalation (not observed experimentally).</p></div>","PeriodicalId":338,"journal":{"name":"International Journal of Mass Spectrometry","volume":"500 ","pages":"Article 117248"},"PeriodicalIF":1.8,"publicationDate":"2024-04-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1387380624000599/pdfft?md5=5abea15fde61eb9788544bd7a1769003&pid=1-s2.0-S1387380624000599-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140548618","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-03-30DOI: 10.1016/j.ijms.2024.117238
Ying Liu , Wenchao Hu , Mogesdessale Asmamaw , Lulu Pan , Hongmin Liu , Juan Li
Erastin, a classical ferroptosis inducer, exerts cytotoxicity in several types of cancer cells including gastric cancer cells. However, the mechanism of erastin in regulating metabolic pathways in gastric cancer remains largely unclear. To investigate the gastric cellular response to erastin therapy, a pseudotargeted metabolomics method was achieved on ultra-high performance liquid chromatography-hybrid triple quadrupole linear ion trap mass spectrometry (UHPLC-QTRAP MS), which was used to investigate metabolic changes between erastin-treated MGC-803 cells and the controls at different time points. We found that erastin induced tremendous impact on the metabolome of gastric cells by affecting key metabolic processes, such as cysteine and methionine metabolism, tryptophan metabolism, purine metabolism, glutathione biosynthesis, glycolysis and TCA cycle. Interestingly, S-adenosylmethionine, methionine, serine and cysteine were obviously increasing treads after erastin treatment, while S-adenosylhomocysteine and glutathione were always down-regulated up to 24 h. The results indicated that DNA methylation was activated and glutathione biosynthesis was blocked in erastin-treated MGC-803 gastric cells, highlighting the importance of erastin as a promising drug candidate for in vivo treatment of gastric tumor.
{"title":"Pseudotargeted metabolomics method and its application in erastin-stimulated gastric adenocarcinoma cells based on liquid chromatography with tandem mass spectrometry","authors":"Ying Liu , Wenchao Hu , Mogesdessale Asmamaw , Lulu Pan , Hongmin Liu , Juan Li","doi":"10.1016/j.ijms.2024.117238","DOIUrl":"https://doi.org/10.1016/j.ijms.2024.117238","url":null,"abstract":"<div><p>Erastin, a classical ferroptosis inducer, exerts cytotoxicity in several types of cancer cells including gastric cancer cells. However, the mechanism of erastin in regulating metabolic pathways in gastric cancer remains largely unclear. To investigate the gastric cellular response to erastin therapy, a pseudotargeted metabolomics method was achieved on ultra-high performance liquid chromatography-hybrid triple quadrupole linear ion trap mass spectrometry (UHPLC-QTRAP MS), which was used to investigate metabolic changes between erastin-treated MGC-803 cells and the controls at different time points. We found that erastin induced tremendous impact on the metabolome of gastric cells by affecting key metabolic processes, such as cysteine and methionine metabolism, tryptophan metabolism, purine metabolism, glutathione biosynthesis, glycolysis and TCA cycle. Interestingly, S-adenosylmethionine, methionine, serine and cysteine were obviously increasing treads after erastin treatment, while S-adenosylhomocysteine and glutathione were always down-regulated up to 24 h. The results indicated that DNA methylation was activated and glutathione biosynthesis was blocked in erastin-treated MGC-803 gastric cells, highlighting the importance of erastin as a promising drug candidate for in <em>vivo</em> treatment of gastric tumor.</p></div>","PeriodicalId":338,"journal":{"name":"International Journal of Mass Spectrometry","volume":"500 ","pages":"Article 117238"},"PeriodicalIF":1.8,"publicationDate":"2024-03-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140332449","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-03-26DOI: 10.1016/j.ijms.2024.117235
Alexander Haack , Bhupendra K. Gurung , Gary A. Eiceman
Nitrate adducts of nitroglycerin (NG) and 1,3-dinitroglycerin (1,3-DNG) were produced from atmospheric pressure chemical ionization with chloride reagent ions and in-source decomposition of M·Cl−. The nitrate adducts subsequently dissociated in the drift region with enthalpies of 109 ± 9 kJ mol −1 at 142–150 °C for NG·NO3− and 101 ± 8 kJ mol−1 at 161–173 °C for 1,3-DNG·NO3−. Similar behavior was not observed generally for other explosives although nitrate adducts of each explosive could be formed using electrospray ionization with a nitrate salt solution. Ion abundances were measured over a range of ion energies with collision induced dissociation in tandem mass spectrometry and models from Density Functional Theory were used to correlate the experimental findings to structural motifs and other adduct properties. The computational modeling showed that adduct stability is dominated by the electrostatic interaction between the nitrate ion and the dipole moment of the neutral explosive. Specifically, explosives having the ability to adapt a conformer with a large dipole moment showed the most stable adducts. Other binding contributions are possible yet were found to be minor in the explosive adducts studied here.
{"title":"NO3− loss from nitrate adducts of explosives by thermal decomposition in tandem Ion mobility spectrometry and by collision induced dissociation in tandem mass spectrometry","authors":"Alexander Haack , Bhupendra K. Gurung , Gary A. Eiceman","doi":"10.1016/j.ijms.2024.117235","DOIUrl":"https://doi.org/10.1016/j.ijms.2024.117235","url":null,"abstract":"<div><p>Nitrate adducts of nitroglycerin (NG) and 1,3-dinitroglycerin (1,3-DNG) were produced from atmospheric pressure chemical ionization with chloride reagent ions and in-source decomposition of M·Cl<sup>−</sup>. The nitrate adducts subsequently dissociated in the drift region with enthalpies of 109 ± 9 kJ mol <sup>−1</sup> at 142–150 °C for NG·NO<sub>3</sub><sup>−</sup> and 101 ± 8 kJ mol<sup>−1</sup> at 161–173 °C for 1,3-DNG·NO<sub>3</sub><sup>−</sup>. Similar behavior was not observed generally for other explosives although nitrate adducts of each explosive could be formed using electrospray ionization with a nitrate salt solution. Ion abundances were measured over a range of ion energies with collision induced dissociation in tandem mass spectrometry and models from Density Functional Theory were used to correlate the experimental findings to structural motifs and other adduct properties. The computational modeling showed that adduct stability is dominated by the electrostatic interaction between the nitrate ion and the dipole moment of the neutral explosive. Specifically, explosives having the ability to adapt a conformer with a large dipole moment showed the most stable adducts. Other binding contributions are possible yet were found to be minor in the explosive adducts studied here.</p></div>","PeriodicalId":338,"journal":{"name":"International Journal of Mass Spectrometry","volume":"500 ","pages":"Article 117235"},"PeriodicalIF":1.8,"publicationDate":"2024-03-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140296310","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-03-20DOI: 10.1016/j.ijms.2024.117237
Ernst Pittenauer , Julian Quehenberger , Viktor Sedlmayr , Martina Marchetti-Deschmann , Oliver Spadiut
<div><p>The fragmentation behavior of some selected synthetic (1,2-diphytanyl- and 1,2-dihexadecyl-glycerophosphatidylethanolamine, 1,2-diphytanyl- and 1,2-dihexadecyl-glycerophosphatidylcholine) as well as of one natural diether phospholipid (2,3-diphytanyl-glycerophosphatidylinositol), the latter obtained from extracts of the archaeon <em>Sulfolobus acidocaldaricus</em>, was described by negative- and positive-ion MALDI high-energy CID tandem time-flight mass spectrometry for the first time. In contrast to the fragmentation pathways of classical diester glycerophospholipids, whose fragmentation behavior is already well described, the investigated diether glycerophospholipids exhibited a very different fragmentation behavior. The <strong>[M</strong>–<strong>H]</strong><sup><strong>−</strong></sup>-precursor ions (ethanolamine, inositol) showed abundant high-mass charge-remote site fragmentation of the alkyl chains with easy determination of all methyl branching points (if present). Corresponding low mass product ions elucidated the identity of the polar head group. In contrast, <strong>[M+H]</strong><sup><strong>+</strong></sup>-precursor ions of ethanolamine derivatives showed unusual loss of H<sub>3</sub>PO<sub>4</sub> directly from the precursor ion and McLafferty-like rearrangements of selected product ions differing between s<em>n</em>1-and s<em>n</em>2-substituents, <strong>[R</strong><sub><strong>1</strong></sub><strong>O+58]</strong><sup><strong>+</strong></sup> and <strong>[R</strong><sub><strong>2</strong></sub><strong>O+42]</strong><sup><strong>+</strong></sup> ions, respectively. No diagnostic low mass product ions or high mass charge-remote site fragmentations are observed. A yet undescribed rearrangement reaction for protonated diether phosphocholine derivates was found by an intramolecular transesterification rearrangement of the precursor ion forming protonated O-alkyl glycerophosphatidylcholine. Besides, high mass charge-remote site fragmentation of the alkyl chains was observed. High-energy CID-spectra of <strong>[M+Na]</strong><sup><strong>+</strong></sup>-precursor ions showed only little fragmentation (ethanolamine, inositol) with abundant partial polar head group losses and low mass head group product ions. In contrast, the <strong>[M+Na]</strong><sup><strong>+</strong></sup>-precursor ions of corresponding choline derivatives showed significant charge-remote site fragmentation of the alkyl chains and diagnostic low mass head group ions. In case of the ethanolamine derivatives the <strong>[M+2Na–H]</strong><sup><strong>+</strong></sup>-precursor ions exhibited abundant polar head group losses and high mass charge-remote site fragmentation with diagnostic low mass head group product ions. The inositol derivative mainly yielded disodiated dehydrated inositol phosphate as product ions. Finally, two diether phospholipid-specific product ions, the newly described <strong>K-</strong> and <strong>L-</strong>type ions, are describe
{"title":"High-energy CID tandem TOF-MS of various types of precursor ions of selected diether phospholipids: Diagnostic known and unexpected fragmentation pathways","authors":"Ernst Pittenauer , Julian Quehenberger , Viktor Sedlmayr , Martina Marchetti-Deschmann , Oliver Spadiut","doi":"10.1016/j.ijms.2024.117237","DOIUrl":"https://doi.org/10.1016/j.ijms.2024.117237","url":null,"abstract":"<div><p>The fragmentation behavior of some selected synthetic (1,2-diphytanyl- and 1,2-dihexadecyl-glycerophosphatidylethanolamine, 1,2-diphytanyl- and 1,2-dihexadecyl-glycerophosphatidylcholine) as well as of one natural diether phospholipid (2,3-diphytanyl-glycerophosphatidylinositol), the latter obtained from extracts of the archaeon <em>Sulfolobus acidocaldaricus</em>, was described by negative- and positive-ion MALDI high-energy CID tandem time-flight mass spectrometry for the first time. In contrast to the fragmentation pathways of classical diester glycerophospholipids, whose fragmentation behavior is already well described, the investigated diether glycerophospholipids exhibited a very different fragmentation behavior. The <strong>[M</strong>–<strong>H]</strong><sup><strong>−</strong></sup>-precursor ions (ethanolamine, inositol) showed abundant high-mass charge-remote site fragmentation of the alkyl chains with easy determination of all methyl branching points (if present). Corresponding low mass product ions elucidated the identity of the polar head group. In contrast, <strong>[M+H]</strong><sup><strong>+</strong></sup>-precursor ions of ethanolamine derivatives showed unusual loss of H<sub>3</sub>PO<sub>4</sub> directly from the precursor ion and McLafferty-like rearrangements of selected product ions differing between s<em>n</em>1-and s<em>n</em>2-substituents, <strong>[R</strong><sub><strong>1</strong></sub><strong>O+58]</strong><sup><strong>+</strong></sup> and <strong>[R</strong><sub><strong>2</strong></sub><strong>O+42]</strong><sup><strong>+</strong></sup> ions, respectively. No diagnostic low mass product ions or high mass charge-remote site fragmentations are observed. A yet undescribed rearrangement reaction for protonated diether phosphocholine derivates was found by an intramolecular transesterification rearrangement of the precursor ion forming protonated O-alkyl glycerophosphatidylcholine. Besides, high mass charge-remote site fragmentation of the alkyl chains was observed. High-energy CID-spectra of <strong>[M+Na]</strong><sup><strong>+</strong></sup>-precursor ions showed only little fragmentation (ethanolamine, inositol) with abundant partial polar head group losses and low mass head group product ions. In contrast, the <strong>[M+Na]</strong><sup><strong>+</strong></sup>-precursor ions of corresponding choline derivatives showed significant charge-remote site fragmentation of the alkyl chains and diagnostic low mass head group ions. In case of the ethanolamine derivatives the <strong>[M+2Na–H]</strong><sup><strong>+</strong></sup>-precursor ions exhibited abundant polar head group losses and high mass charge-remote site fragmentation with diagnostic low mass head group product ions. The inositol derivative mainly yielded disodiated dehydrated inositol phosphate as product ions. Finally, two diether phospholipid-specific product ions, the newly described <strong>K-</strong> and <strong>L-</strong>type ions, are describe","PeriodicalId":338,"journal":{"name":"International Journal of Mass Spectrometry","volume":"499 ","pages":"Article 117237"},"PeriodicalIF":1.8,"publicationDate":"2024-03-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140209309","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}