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The development of a research intelligence tool for rare disease research in the Netherlands 为荷兰罕见病研究开发研究情报工具
IF 4.1 Q1 INFORMATION SCIENCE & LIBRARY SCIENCE Pub Date : 2024-07-23 DOI: 10.1162/qss_a_00320
R. Iping, Ilse Nederveen, B. Ranjbar-Sahraei, Hosein Azarbonyad, Max Dumoulin, Georgios Tsatsaronis, I. M. Mathijssen
This article describes the process of the development of a research intelligence tool to analyse rare disease research in the Netherlands. To the best of our knowledge, this is the first tool that can surface and organise scientific output on rare diseases using established annotation and natural language processing mechanisms. We focus on the track leading up to the development, including strategic motivation and user needs, the development of a proof-of-concept tool, upscaling the idea to a national collaboration project, the development of the final tool and a usability evaluation and subsequent fine-tuning. The tool is a unique visualisation that allows users to benefit with a few clicks from getting the information they require for their needs, and offers novel scientific indicators to characterize (relative) rare disease research activity. We discuss the applications of insights derived from this tool for science policy and to support decision making, and to identify opportunities and potential collaborations and make recommendations for future developments, including a broadening of the scope and discuss potential novel applications.
本文介绍了荷兰罕见病研究智能分析工具的开发过程。据我们所知,这是第一个可以利用成熟的注释和自然语言处理机制来显示和组织罕见病科学成果的工具。我们重点介绍了开发过程中的各个环节,包括战略动机和用户需求、概念验证工具的开发、将这一想法升级为国家合作项目、最终工具的开发、可用性评估和后续微调。该工具是一种独特的可视化工具,用户只需点击几下就能获得所需的信息,并提供了新的科学指标来描述(相对的)罕见病研究活动。我们讨论了从该工具中获得的见解在科学政策、支持决策、确定机会和潜在合作方面的应用,并对未来的发展提出了建议,包括扩大范围和讨论潜在的新应用。
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引用次数: 0
Real influence: A novel approach to characterize the visibility of journals and publications 真实影响力:描述期刊和出版物知名度的新方法
IF 4.1 Q1 INFORMATION SCIENCE & LIBRARY SCIENCE Pub Date : 2024-07-09 DOI: 10.1162/qss_a_00316
Antonio Perianes-Rodríguez, Bianca S. Mira, Daniel Martínez-Ávila, M. C. Grácio
For the last fifty years, the journal impact factor (IF) has been the most prominent of all bibliometric indicators. Since the first Journal Citation Report was launched, the IF has been used, often improperly, to evaluate institutions, publications, and individuals. Its well-known significant technical limitations have not detracted from its popularity, and they contrast with the lack of consensus over the numerous alternatives suggested as complements or replacements. This paper presents a percentile distribution-based proposal for assessing the influence of scientific journals and publications that corrects several of the IF’s main technical limitations using the same set of documents as is used to calculate the IF. Nearly 400 journals of Library Science and Information Science and Biochemistry and Molecular Biology categories were analyzed for this purpose. The results show that the new indicator retains many of its predecessor’s advantages and adds benefits of its own: It is more accurate, more gaming-resistant, more complete, and less influenced by the citation window or extreme observations.
过去五十年来,期刊影响因子(IF)一直是所有文献计量指标中最重要的指标。自第一份《期刊引文报告》发布以来,IF 一直被用来评价机构、出版物和个人,但往往使用不当。众所周知,IF 在技术上有很大的局限性,但这并没有影响它的受欢迎程度,与此形成鲜明对比的是,人们对作为补充或替代的众多替代指标缺乏共识。本文提出了一种基于百分位数分布的科学期刊和出版物影响力评估建议,利用计算 IF 所用的同一组文献,修正了 IF 的几个主要技术局限。为此分析了近 400 种图书馆科学与信息科学类期刊和生物化学与分子生物学类期刊。结果表明,新指标保留了其前身的许多优点,并增加了自身的优势:它更准确、更耐博弈、更完整,受引用窗口或极端观察的影响也更小。
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引用次数: 0
Exploring publication networks with a local cohesion-maximizing algorithm 用局部内聚力最大化算法探索出版网络
IF 6.4 Q1 Social Sciences Pub Date : 2024-06-10 DOI: 10.1162/qss_a_00314
Matthias Held, Jochen Gläser
Global algorithms have taken precedence in bibliometrics as approaches to the reconstruction of topics from networks of publications. They partition a large set of publications and the resulting disjoint clusters are then interpreted as individual topics. This is at odds with a sociological understanding of topics as formed by the participants working on and being influenced by them, an understanding that is best operationalized by algorithms prioritizing cohesion rather than separation, by using local information and by allowing topics to overlap. Thus, a different kind of algorithm is needed for topic reconstruction to be successful. Local algorithms represent a promising solution. In this paper, we present for consideration a new Multilayered, Adjustable, Local Bibliometric Algorithm (MALBA), which is in line with sociological definitions of topics and reconstructs dense regions in bibliometric networks locally. MALBA grows a subgraph from a publications seed either by interacting with a fixed network dataset, or by querying an online database to obtain up-to-date linkage information. New candidates for addition are evaluated by assessing the links in two data models. Experiments with publications on the h-index and with ground truth data positioned in a dataset of AMO physics illustrate the properties of MALBA and its potential. https://www.webofscience.com/api/gateway/wos/peer-review/10.1162/qss_a_00314
作为从出版物网络中重建主题的方法,全局算法在文献计量学中占据了主导地位。它们对大量出版物进行分区,然后将由此产生的不相连的聚类解释为单个主题。这与社会学对主题的理解相悖,社会学认为主题是由研究主题并受其影响的参与者形成的,而这种理解的最佳操作方式是算法优先考虑内聚而非分离,使用本地信息并允许主题重叠。因此,要想成功进行话题重构,需要一种不同的算法。本地算法是一种很有前途的解决方案。在本文中,我们提出了一种新的多层、可调整、本地文献计量算法(MALBA)供大家参考,该算法符合社会学对主题的定义,可在本地重建文献计量网络中的密集区域。MALBA 通过与固定的网络数据集交互,或通过查询在线数据库以获取最新的链接信息,从出版物种子中生成子图。通过评估两个数据模型中的链接来评估新的候选添加子图。利用 h 指数上的出版物和 AMO 物理数据集中的地面实况数据进行的实验说明了 MALBA 的特性及其潜力。https://www.webofscience.com/api/gateway/wos/peer-review/10.1162/qss_a_00314。
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引用次数: 0
Research funding in different SCI disciplines: A comparison analysis based on Web of Science 不同 SCI 学科的研究经费:基于 Web of Science 的比较分析
IF 6.4 Q1 Social Sciences Pub Date : 2024-06-10 DOI: 10.1162/qss_a_00315
Wencan Tian, Ruonan Cai, Zhichao Fang, Qianqian Xie, Zhigang Hu, Xianwen Wang
To provide valuable insights for shaping future funding policies, in this study, we offer a comprehensive panorama of the research funding across 171 SCI disciplines in the past decade (2011–2020), based on more than 13 million scientific literature records from the Web of Science. The relationship between funding and research impact was also explored. To this end, we employ two indicators, i.e., the universality and multiplicity of funding, to indicate the funding level and six indicators to gauge the impact advantages of funding. Our findings reveal an upward trend in both the universality (increasing from 66.30% to 74.26%) and multiplicity (increasing from 2.82 to 3.26) of funding over the past decade. The allocation of funding varies across disciplines, with life sciences and earth sciences receiving the highest percentage of funding (78.31%) and medicine having the highest multiplicity of funding (3.07). Engineering and computer science have seen relatively rapid growth in terms of universality and multiplicity of funding. Funded articles have a greater impact than unfunded ones. And this impact strengthens as the number of funding grants increases. Through regression analysis, the citation advantage of funding was also proven at the article level, although the usage advantage is not significant. https://www.webofscience.com/api/gateway/wos/peer-review/10.1162/qss_a_00315
为了给未来资助政策的制定提供有价值的见解,在本研究中,我们基于 Web of Science 中超过 1300 万条科学文献记录,对过去十年(2011-2020 年)中 171 个 SCI 学科的研究资助情况进行了全面概述。我们还探讨了经费与研究影响力之间的关系。为此,我们采用了两个指标(即资助的普遍性和多重性)来表示资助水平,并采用六个指标来衡量资助的影响优势。我们的研究结果表明,在过去十年中,资助的普遍性(从 66.30% 增加到 74.26%)和多重性(从 2.82 增加到 3.26)都呈上升趋势。各学科的资金分配情况各不相同,生命科学和地球科学获得的资金比例最高(78.31%),医学获得的资金倍数最高(3.07)。工程学和计算机科学在资助的普遍性和多重性方面增长相对较快。获得资助的文章比未获得资助的文章具有更大的影响力。而且这种影响力随着资助数量的增加而增强。https://www.webofscience.com/api/gateway/wos/peer-review/10.1162/qss_a_00315。
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引用次数: 0
20 years of the Open Access Movement: a retrospective study on the relationship between publishing strategies and scientific capital of Brazilian researchers in Biological Science 开放获取运动 20 年:巴西生物科学研究人员出版策略与科学资本之间关系的回顾性研究
IF 6.4 Q1 Social Sciences Pub Date : 2024-05-06 DOI: 10.1162/qss_a_00308
D. Sarzi, J. Leta
In this study, we aim to investigate the publishing strategies adopted by the Brazilian scientific community, and how it is related with the researchers’ scientific capital. The “research productivity” grant (PQ grant) was taken as an indicator of scientific capital: the higher is the PQ grant a researcher receives the higher is his/her scientific capital. Personal data from 6,993 researchers linked to at least one Brazilian graduate program in biological sciences were obtained through the Sucupira Platform, data on articles published from 2000 to 2019 were retrieved from Lattes Platform and DOAJ was considered to classify articles as OA. Our main findings indicate that subscription-based journals are the most prevalent publishing strategy, but the proportion of OA publications is increasing over time, mainly with APC. We also observed that the lower is the level of PQ grant, the higher is the share of articles in OA journals. Finally, we observed a growing trend in the percentage of researchers with high and mid-high adherence to OA from all levels of PQ grant, but mainly with APC. Mapping the dynamics of publishing strategies can play an important step towards driving policies oriented to the promotion of OA. https://www.webofscience.com/api/gateway/wos/peer-review/10.1162/qss_a_00308
在本研究中,我们旨在调查巴西科学界所采取的出版策略,以及这些策略与研究人员的科学资本之间的关系。我们将 "研究生产率 "补助金(PQ 补助金)作为科学资本的指标:研究人员获得的 PQ 补助金越高,其科学资本就越高。我们通过 Sucupira 平台获得了与至少一个巴西生物科学研究生项目相关联的 6993 名研究人员的个人数据,从 Lattes 平台检索了 2000 年至 2019 年发表的文章数据,并考虑了 DOAJ 对文章的 OA 分类。我们的主要研究结果表明,基于订阅的期刊是最普遍的出版策略,但随着时间的推移,OA出版物的比例正在增加,主要是APC。我们还发现,PQ 资助水平越低,OA 期刊中的文章比例越高。最后,我们观察到,在所有 PQ 资助级别中,高度和中度坚持 OA 的研究人员比例呈增长趋势,但主要是采用 APC 的研究人员。绘制出版战略的动态图谱可以为推动以促进开放式获取为导向的政策迈出重要一步。https://www.webofscience.com/api/gateway/wos/peer-review/10.1162/qss_a_00308。
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引用次数: 0
Latent Variable Modeling of Scientific Impact: Estimation of the Q Model Parameters with Structural Equation Models 科学影响力的潜在变量建模:用结构方程模型估计 Q 模型参数
IF 6.4 Q1 Social Sciences Pub Date : 2024-05-06 DOI: 10.1162/qss_a_00313
Boris Forthmann, Steffen Nestler
Statistical modeling of scientific productivity and impact provides insights into bibliometric measures used also to quantify differences between individual scholars. The Q model decomposes the log-transformed impact of a published paper into a researcher capacity parameter and a random luck parameter. These two parameters are then modeled together with the log-transformed number of published papers (i.e., an indicator of productivity) by means of a trivariate normal distribution. In this work we propose a formulation of the Q model that can be estimated as a structural equation model. The Q model as a structural equation model allows to quantify the reliability of researchers’ Q parameter estimates, it can be extended to incorporate person covariates, and multivariate extensions of the Q model could also be estimated. We empirically illustrate our approach to estimate the Q model and also provide openly available code for R and Mplus. https://www.webofscience.com/api/gateway/wos/peer-review/10.1162/qss_a_00313
科学生产力和影响力的统计建模为文献计量学提供了深入的见解,也用于量化学者个体之间的差异。Q 模型将已发表论文的对数转换影响力分解为研究人员能力参数和随机运气参数。然后通过三变量正态分布将这两个参数与对数变换后的已发表论文数量(即生产力指标)一起建模。在这项工作中,我们提出了一种可以作为结构方程模型估算的 Q 模型。将 Q 模型作为结构方程模型,可以量化研究人员对 Q 参数估计的可靠性,还可以将其扩展到包含人的协变量,并对 Q 模型的多变量扩展进行估计。我们通过经验说明了我们估计 Q 模型的方法,并提供了 R 和 Mplus 的公开代码。https://www.webofscience.com/api/gateway/wos/peer-review/10.1162/qss_a_00313。
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引用次数: 0
Linking science with media and policy: the case of academics in Flanders, Belgium 将科学与媒体和政策联系起来:比利时佛兰德学术界的案例
IF 6.4 Q1 Social Sciences Pub Date : 2024-05-06 DOI: 10.1162/qss_a_00311
Hans Jonker, Florian Vanlee
There is a growing expectation for academics to go public, that is to actively engage with the media and supply policy advice for decision-makers. Data showing these interactions are scarce. By linking data from FRIS, BelgaPress and Overton, this study reveals a first snapshot of academics’ media mentions and policy citations for all active academics from Dutch-speaking universities in Belgium. Explorative analysis reveals distinct sector differences, with academics from Social sciences, Medical and Health sciences being most visible. A small minority of mostly male academics featured very often in media as media figures, contrasted by much more discrete policy pillars whose publications got cited often, but featured hardly in traditional media. https://www.webofscience.com/api/gateway/wos/peer-review/10.1162/qss_a_00311
人们越来越期待学术界走向公众,即积极与媒体互动,为决策者提供政策建议。显示这些互动的数据却很少。通过将 FRIS、BelgaPress 和 Overton 的数据联系起来,本研究首次揭示了比利时荷语大学所有活跃学者的媒体提及率和政策引用率。探索性分析揭示了明显的行业差异,社会科学、医学和健康科学领域的学者最受关注。少数以男性为主的学者作为媒体人物经常出现在媒体上,与此形成鲜明对比的是,更多的政策支柱虽然其出版物经常被引用,但却很少出现在传统媒体上。https://www.webofscience.com/api/gateway/wos/peer-review/10.1162/qss_a_00311。
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引用次数: 0
A Matter of Time? Gender and Ethnic Inequality in the Academic Publishing Careers of Dutch PhDs 时间问题?荷兰博士学术出版生涯中的性别和种族不平等
IF 6.4 Q1 Social Sciences Pub Date : 2024-04-12 DOI: 10.1162/qss_a_00306
Anne Maaike Mulders, Bas Hofstra, J. Tolsma
Women and ethnic minorities underpopulate influential academic positions, even though these groups are increasingly represented at the doctorate level. Does this imply that gender and ethnic gaps in academic careers are closing? Prior studies on gender inequality in academia predominantly focus on single academic fields or restricted time periods. Longitudinal descriptions of ethnic inequality are even more rare. Using a novel dataset of a near-population of doctorates (N = 95,130) from Dutch universities across all academic fields between 1990–2021, and their publications, we extend descriptions on gender and ethnic inequality in academic publication careers in the Netherlands. Furthermore, we assess trends in inequality over approximately 30 years without focusing on established academics. We find that while women are as likely as men to start an academic publishing career after obtaining doctorate, their careers are shorter. Ethnic minority scholars are less likely to start an academic career after doctorate, and when they do, they stop sooner than ethnic majority researchers. We do not observe a trend towards more equality in academic publishing careers. In conclusion, efforts to increase diversity in Dutch academia have not yet paid off, and gender and ethnic parity in are likely not just a matter of time. https://www.webofscience.com/api/gateway/wos/peer-review/10.1162/qss_a_00306
女性和少数民族在有影响力的学术职位上任职人数不足,尽管这些群体在博士一级的人数越来越多。这是否意味着学术生涯中的性别和种族差距正在缩小?之前关于学术界性别不平等的研究主要集中在单一学术领域或有限的时间段。对种族不平等的纵向描述则更为罕见。我们利用 1990-2021 年间荷兰各大学所有学术领域的博士(95,130 人)及其发表论文的新数据集,扩展了对荷兰学术发表生涯中性别和种族不平等现象的描述。此外,我们还评估了约 30 年来的不平等趋势,但并不关注已获博士学位的学者。我们发现,虽然女性与男性一样有可能在获得博士学位后开始学术出版生涯,但她们的职业生涯较短。少数族裔学者在获得博士学位后开始学术生涯的可能性较小,即使他们开始了学术生涯,也比多数族裔研究人员更早停止。我们没有观察到学术出版职业更加平等的趋势。总之,荷兰学术界为提高多样性所做的努力尚未取得成效,性别和种族平等很可能不是一个时间问题。https://www.webofscience.com/api/gateway/wos/peer-review/10.1162/qss_a_00306。
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引用次数: 0
Public Engagement with COVID-19 Preprints: Bridging the Gap Between Scientists and Society 公众参与 COVID-19 预印本:缩小科学家与社会之间的差距
IF 6.4 Q1 Social Sciences Pub Date : 2024-03-25 DOI: 10.1162/qss_a_00302
Justus Henke
The surge in preprint server use, especially during the Covid-19 pandemic, necessitates a reex-amination of their significance in the realm of science communication. This study rigorously investigates discussions surrounding preprints, framing them within the contexts of systems theory and boundary objects in scholarly communication. An analysis of a curated selection of COVID-19-related preprints from bioRxiv and medRxiv was conducted, emphasizing those that transitioned to journal publications, alongside the associated commentary and Twitter ac-tivity. The dataset was bifurcated into comments by biomedical experts versus those by non-experts, encompassing both academic and general public perspectives. Findings revealed that while peers dominated nearly half the preprint discussions, their presence in Twitter dialogues was markedly diminished. Yet, intriguingly, the themes explored by these two groups diverged considerably. Preprints emerged as potent boundary objects, reinforcing, rather than obscuring, the delineation between scientific and non-scientific discourse. They serve as crucial conduits for knowledge dissemination and foster inter-disciplinary engagements. Nonetheless, the inter-play between scientists and the wider public remains nuanced, necessitating strategies to incor-porate these diverse discussions into the peer review continuum without compromising aca-demic integrity and to cultivate sustained engagement from both experts and the broader community. https://www.webofscience.com/api/gateway/wos/peer-review/10.1162/qss_a_00302
预印本服务器使用量的激增,尤其是在 Covid-19 大流行期间,使得我们有必要重新审视预印本在科学交流领域的意义。本研究严格调查了围绕预印本的讨论,将其置于系统理论和学术交流中的边界对象的背景下。研究分析了从 bioRxiv 和 medRxiv 中精心挑选的 COVID-19 相关预印本,重点分析了那些过渡到期刊出版物的预印本,以及相关的评论和 Twitter 活动。数据集分为生物医学专家评论和非专家评论,涵盖了学术界和普通公众的观点。研究结果显示,虽然同行主导了近一半的预印本讨论,但他们在推特对话中的存在却明显减少。然而,有趣的是,这两个群体所探讨的主题却大相径庭。预印本是一种有效的边界对象,它加强而不是模糊了科学与非科学话语之间的界限。预印本是传播知识和促进学科间交流的重要渠道。然而,科学家与更广泛的公众之间的相互影响仍然存在细微差别,这就需要制定策略,在不损害学术完整性的前提下将这些不同的讨论纳入同行评审的连续体中,并培养专家和更广泛的社区的持续参与。https://www.webofscience.com/api/gateway/wos/peer-review/10.1162/qss_a_00302。
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引用次数: 0
Operationalizing open and restricted-access data – Formulating verifiable criteria for the openness of datasets mentioned in biomedical research articles 开放和限制访问数据的可操作性--为生物医学研究文章中提及的数据集的开放性制定可核查的标准
IF 6.4 Q1 Social Sciences Pub Date : 2024-03-25 DOI: 10.1162/qss_a_00301
Evgeny Bobrov, N. Riedel, Miriam Kip
Increasing the availability of research datasets is a goal of many stakeholders in science, and monitoring related practices requires definitions of the entity in question. There are several, largely overlapping, definitions for open data. However, they have so far not been translated into operationalizations which would allow to detect in a structured and reproducible way, whether for a specific research article underlying data have been shared. Here, we propose a detailed set of criteria to enable such assessments, focusing on biomedical research. We have used these criteria to distribute performance-oriented funding at a large university hospital and to monitor data sharing practices in a dashboard. In addition to fully open data, we include separate criteria for datasets with restricted access, which we also reward. The criteria are partly inspired by the FAIR principles, particularly findability and accessibility, but do not map onto individual principles. The criteria attribute open data status in a binary fashion, both to individual datasets and, ultimately, articles with which they were shared. The criteria allow a verifiable assessment, based on automated and manual screening steps, which we have implemented and validated, as described elsewhere. Here, we focus conceptually on assessing the presence of shared data. https://www.webofscience.com/api/gateway/wos/peer-review/10.1162/qss_a_00301
提高研究数据集的可用性是科学界许多利益相关者的目标,而监测相关实践则需要对相关实体进行定义。关于开放数据的定义有几种,但大多相互重叠。然而,迄今为止,这些定义还没有转化为可操作的方法,从而能够以结构化和可复制的方式检测特定研究文章的基础数据是否已经共享。在此,我们以生物医学研究为重点,提出了一套能够进行此类评估的详细标准。我们利用这些标准在一家大型大学医院分配以绩效为导向的资金,并在仪表板中监控数据共享实践。除了完全开放的数据外,我们还为限制访问的数据集制定了单独的标准,并对这些数据集进行奖励。这些标准部分受到 FAIR 原则的启发,尤其是可查找性和可访问性,但并不等同于个别原则。这些标准以二进制的方式将开放数据状态归属于单个数据集,并最终归属于与之共享的文章。这些标准允许根据自动和手动筛选步骤进行可验证的评估,我们已经实施并验证了这些步骤,详情请参见其他章节。https://www.webofscience.com/api/gateway/wos/peer-review/10.1162/qss_a_00301
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引用次数: 0
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Quantitative Science Studies
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