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Molecular dynamics of photosynthetic electron flow in a biophotovoltaic system.
IF 14 1区 环境科学与生态学 Q1 ENVIRONMENTAL SCIENCES Pub Date : 2024-12-15 eCollection Date: 2025-01-01 DOI: 10.1016/j.ese.2024.100519
Jianqi Yuan, Jens Appel, Kirstin Gutekunst, Bin Lai, Jens Olaf Krömer

Biophotovoltaics (BPV) represents an innovative biohybrid technology that couples electrochemistry with oxygenic photosynthetic microbes to harness solar energy and convert it into electricity. Central to BPV systems is the ability of microbes to perform extracellular electron transfer (EET), utilizing an anode as an external electron sink. This process simultaneously serves as an electron sink and enhances the efficiency of water photolysis compared to conventional electrochemical water splitting. However, optimizing BPV systems has been hindered by a limited understanding of EET pathways and their impacts on cellular physiology. Here we show photosynthetic electron flows in Synechocystis sp. PCC 6803 cultivated in a ferricyanide-mediated BPV system. By monitoring carbon fixation rates and photosynthetic oxygen exchange, we reveal that EET does not significantly affect cell growth, respiration, carbon fixation, or photosystem II efficiency. However, EET competes for electrons with the flavodiiron protein flv1/3, influencing Mehler-like reactions. Our findings suggest that the ferricyanide mediator facilitates photosynthetic electron extraction from ferredoxins downstream of photosystem I. Additionally, the mediator induces a more reduced plastoquinone pool, an effect independent of EET. At very high ferricyanide concentrations, the electron transport chain exhibits responses resembling the impact of trace cyanide. These insights provide a molecular-level understanding of EET pathways in Synechocystis within BPV systems, offering a foundation for the future refinement of BPV technologies.

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引用次数: 0
A social-environmental impact perspective of generative artificial intelligence.
IF 14 1区 环境科学与生态学 Q1 ENVIRONMENTAL SCIENCES Pub Date : 2024-12-15 eCollection Date: 2025-01-01 DOI: 10.1016/j.ese.2024.100520
Mohammad Hosseini, Peng Gao, Carolina Vivas-Valencia
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引用次数: 0
The 2023 report of the synergetic roadmap on carbon neutrality and clean air for China: Carbon reduction, pollution mitigation, greening, and growth.
IF 14 1区 环境科学与生态学 Q1 ENVIRONMENTAL SCIENCES Pub Date : 2024-11-27 eCollection Date: 2025-01-01 DOI: 10.1016/j.ese.2024.100517
Jicheng Gong, Zhicong Yin, Yu Lei, Xi Lu, Qiang Zhang, Cilan Cai, Qimin Chai, Huopo Chen, Renjie Chen, Wenhui Chen, Jing Cheng, Xiyuan Chi, Hancheng Dai, Zhanfeng Dong, Guannan Geng, Jianlin Hu, Shan Hu, Cunrui Huang, Tiantian Li, Wei Li, Xiaomei Li, Yongsheng Lin, Jun Liu, Jinghui Ma, Yue Qin, Weiqi Tang, Dan Tong, Jiaxing Wang, Lijuan Wang, Qian Wang, Xuhui Wang, Xuying Wang, Libo Wu, Rui Wu, Qingyang Xiao, Yang Xie, Xiaolong Xu, Tao Xue, Haipeng Yu, Da Zhang, Li Zhang, Ning Zhang, Shaohui Zhang, Shaojun Zhang, Xian Zhang, Zengkai Zhang, Hongyan Zhao, Bo Zheng, Yixuan Zheng, Tong Zhu, Huijun Wang, Jinnan Wang, Kebin He

The response to climate change and air pollution control demonstrates strong synergy across scientific mechanisms, targets, strategies, and governance systems. This report, based on a monitoring indicator system for coordinated governance of air pollution and climate change, employs an interdisciplinary approach combining natural and social sciences. It establishes 20 indicators across five key areas: air pollution and climate change, governance systems and practices, structural transformation and technologies, atmospheric components and emission reduction pathways, and health impacts and co-benefits. This report tries to provide actionable insights into the interconnectedness of air pollution and climate governance. It highlights key policy gaps, presents updated indicators, and offers a refined monitoring framework to track progress toward China's dual goals of reducing emissions and improving air quality. Compared to previous editions, this year's report has updated four key indicators: meteorological impacts on air quality, climate change and its effects, governance policies, and low-carbon building energy systems. The aim is to further refine the monitoring framework, track progress, and establish a comprehensive theory for collaborative governance while identifying challenges and proposing solutions for China's pathway to carbon neutrality and clean air. The report comprises six chapters. The executive summary chapter is followed by analyzing air pollution and climate change interactions. Governance systems and practices are discussed in the third chapter, focusing on policy implementation and local experiences. The fourth chapter addresses structural transformations and emission reduction technologies, including energy and industrial shifts, transportation, low-carbon buildings, carbon capture and storage, and power systems. The fifth chapter outlines atmospheric component dynamics and emission pathways, presenting insights into emission drivers and future strategies. The sixth chapter assesses health impacts and the benefits of coordinated actions. Since 2019, China Clean Air Policy Partnership has produced annual reports on China's progress in climate and air pollution governance, receiving positive feedback. In 2023, the report was co-developed with Tsinghua University's Carbon Neutrality Research Institute, involving over 100 experts and multiple academic forums. The collaboration aims to continuously improve the indicator system and establish the report as a key resource supporting China's efforts in pollution reduction, carbon mitigation, greening, and sustainable growth.

{"title":"The 2023 report of the synergetic roadmap on carbon neutrality and clean air for China: Carbon reduction, pollution mitigation, greening, and growth.","authors":"Jicheng Gong, Zhicong Yin, Yu Lei, Xi Lu, Qiang Zhang, Cilan Cai, Qimin Chai, Huopo Chen, Renjie Chen, Wenhui Chen, Jing Cheng, Xiyuan Chi, Hancheng Dai, Zhanfeng Dong, Guannan Geng, Jianlin Hu, Shan Hu, Cunrui Huang, Tiantian Li, Wei Li, Xiaomei Li, Yongsheng Lin, Jun Liu, Jinghui Ma, Yue Qin, Weiqi Tang, Dan Tong, Jiaxing Wang, Lijuan Wang, Qian Wang, Xuhui Wang, Xuying Wang, Libo Wu, Rui Wu, Qingyang Xiao, Yang Xie, Xiaolong Xu, Tao Xue, Haipeng Yu, Da Zhang, Li Zhang, Ning Zhang, Shaohui Zhang, Shaojun Zhang, Xian Zhang, Zengkai Zhang, Hongyan Zhao, Bo Zheng, Yixuan Zheng, Tong Zhu, Huijun Wang, Jinnan Wang, Kebin He","doi":"10.1016/j.ese.2024.100517","DOIUrl":"10.1016/j.ese.2024.100517","url":null,"abstract":"<p><p>The response to climate change and air pollution control demonstrates strong synergy across scientific mechanisms, targets, strategies, and governance systems. This report, based on a monitoring indicator system for coordinated governance of air pollution and climate change, employs an interdisciplinary approach combining natural and social sciences. It establishes 20 indicators across five key areas: air pollution and climate change, governance systems and practices, structural transformation and technologies, atmospheric components and emission reduction pathways, and health impacts and co-benefits. This report tries to provide actionable insights into the interconnectedness of air pollution and climate governance. It highlights key policy gaps, presents updated indicators, and offers a refined monitoring framework to track progress toward China's dual goals of reducing emissions and improving air quality. Compared to previous editions, this year's report has updated four key indicators: meteorological impacts on air quality, climate change and its effects, governance policies, and low-carbon building energy systems. The aim is to further refine the monitoring framework, track progress, and establish a comprehensive theory for collaborative governance while identifying challenges and proposing solutions for China's pathway to carbon neutrality and clean air. The report comprises six chapters. The executive summary chapter is followed by analyzing air pollution and climate change interactions. Governance systems and practices are discussed in the third chapter, focusing on policy implementation and local experiences. The fourth chapter addresses structural transformations and emission reduction technologies, including energy and industrial shifts, transportation, low-carbon buildings, carbon capture and storage, and power systems. The fifth chapter outlines atmospheric component dynamics and emission pathways, presenting insights into emission drivers and future strategies. The sixth chapter assesses health impacts and the benefits of coordinated actions. Since 2019, China Clean Air Policy Partnership has produced annual reports on China's progress in climate and air pollution governance, receiving positive feedback. In 2023, the report was co-developed with Tsinghua University's Carbon Neutrality Research Institute, involving over 100 experts and multiple academic forums. The collaboration aims to continuously improve the indicator system and establish the report as a key resource supporting China's efforts in pollution reduction, carbon mitigation, greening, and sustainable growth.</p>","PeriodicalId":34434,"journal":{"name":"Environmental Science and Ecotechnology","volume":"23 ","pages":"100517"},"PeriodicalIF":14.0,"publicationDate":"2024-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11665702/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142883115","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Graph neural networks and transfer entropy enhance forecasting of mesozooplankton community dynamics. 图神经网络和转移熵增强了对中浮游生物群落动态的预测。
IF 14 1区 环境科学与生态学 Q1 ENVIRONMENTAL SCIENCES Pub Date : 2024-11-26 eCollection Date: 2025-01-01 DOI: 10.1016/j.ese.2024.100514
Minhyuk Jeung, Min-Chul Jang, Kyoungsoon Shin, Seung Won Jung, Sang-Soo Baek

Mesozooplankton are critical components of marine ecosystems, acting as key intermediaries between primary producers and higher trophic levels by grazing on phytoplankton and influencing fish populations. They play pivotal roles in the pelagic food web and export production, affecting the biogeochemical cycling of carbon and nutrients. Therefore, accurately modeling and visualizing mesozooplankton community dynamics is essential for understanding marine ecosystem patterns and informing effective management strategies. However, modeling these dynamics remains challenging due to the complex interplay among physical, chemical, and biological factors, and the detailed parameterization and feedback mechanisms are not fully understood in theory-driven models. Graph neural network (GNN) models offer a promising approach to forecast multivariate features and define correlations among input variables. The high interpretive power of GNNs provides deep insights into the structural relationships among variables, serving as a connection matrix in deep learning algorithms. However, there is insufficient understanding of how interactions between input variables affect model outputs during training. Here we investigate how the graph structure of ecosystem dynamics used to train GNN models affects their forecasting accuracy for mesozooplankton species. We find that forecasting accuracy is closely related to interactions within ecosystem dynamics. Notably, increasing the number of nodes does not always enhance model performance; closely connected species tend to produce similar forecasting outputs in terms of trend and peak timing. Therefore, we demonstrate that incorporating the graph structure of ecosystem dynamics can improve the accuracy of mesozooplankton modeling by providing influential information about species of interest. These findings will provide insights into the influential factors affecting mesozooplankton species and emphasize the importance of constructing appropriate graphs for forecasting these species.

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引用次数: 0
More inputs of antibiotics into groundwater but less into rivers as a result of manure management in China.
IF 14 1区 环境科学与生态学 Q1 ENVIRONMENTAL SCIENCES Pub Date : 2024-11-26 eCollection Date: 2025-01-01 DOI: 10.1016/j.ese.2024.100513
Qi Zhang, Yanan Li, Carolien Kroeze, Milou G M van de Schans, Jantiene Baartman, Jing Yang, Shiyang Li, Wen Xu, Mengru Wang, Lin Ma, Fusuo Zhang, Maryna Strokal

Antibiotics are extensively used in livestock production to prevent and treat diseases, but their environmental impact through contamination of rivers and groundwater is a growing concern. The specific antibiotics involved, their sources, and their geographic distribution remain inadequately documented, hindering effective mitigation strategies for river and groundwater pollution control caused by livestock production. Here we develope the spatially explicit MARINA-Antibiotics (China-1.0) model to estimate the flows of 24 antibiotics from seven livestock species into rivers and leaching into groundwater across 395 sub-basins in China, and examine changes between 2010 and 2020. We find that 8364 tonnes and 3436 tonnes of antibiotics entered rivers and groundwater nationwide in 2010 and 2020, respectively. Approximately 50-90% of these amounts originated from about 40% of the basin areas. Antibiotic inputs to rivers decreased by 59% from 2010 to 2020, largely due to reduced manure point sources. Conversely, antibiotic leaching into groundwater increased by 15%, primarily because of enhanced manure recycling practices. Pollution varied by antibiotic groups and livestock species: fluoroquinolones contributed approximately 55% to river pollution, mainly from pig, cattle, and chicken manure; sulfonamides accounted for over 90% of antibiotics in groundwater, predominantly from pig and sheep manure. While our findings support existing policies promoting manure recycling to mitigate river pollution in China, they highlight the need for greater attention to groundwater pollution. This aspect is essential to consider in developing and designing future reduction strategies for antibiotic pollution from livestock production.

{"title":"More inputs of antibiotics into groundwater but less into rivers as a result of manure management in China.","authors":"Qi Zhang, Yanan Li, Carolien Kroeze, Milou G M van de Schans, Jantiene Baartman, Jing Yang, Shiyang Li, Wen Xu, Mengru Wang, Lin Ma, Fusuo Zhang, Maryna Strokal","doi":"10.1016/j.ese.2024.100513","DOIUrl":"https://doi.org/10.1016/j.ese.2024.100513","url":null,"abstract":"<p><p>Antibiotics are extensively used in livestock production to prevent and treat diseases, but their environmental impact through contamination of rivers and groundwater is a growing concern. The specific antibiotics involved, their sources, and their geographic distribution remain inadequately documented, hindering effective mitigation strategies for river and groundwater pollution control caused by livestock production. Here we develope the spatially explicit MARINA-Antibiotics (China-1.0) model to estimate the flows of 24 antibiotics from seven livestock species into rivers and leaching into groundwater across 395 sub-basins in China, and examine changes between 2010 and 2020. We find that 8364 tonnes and 3436 tonnes of antibiotics entered rivers and groundwater nationwide in 2010 and 2020, respectively. Approximately 50-90% of these amounts originated from about 40% of the basin areas. Antibiotic inputs to rivers decreased by 59% from 2010 to 2020, largely due to reduced manure point sources. Conversely, antibiotic leaching into groundwater increased by 15%, primarily because of enhanced manure recycling practices. Pollution varied by antibiotic groups and livestock species: fluoroquinolones contributed approximately 55% to river pollution, mainly from pig, cattle, and chicken manure; sulfonamides accounted for over 90% of antibiotics in groundwater, predominantly from pig and sheep manure. While our findings support existing policies promoting manure recycling to mitigate river pollution in China, they highlight the need for greater attention to groundwater pollution. This aspect is essential to consider in developing and designing future reduction strategies for antibiotic pollution from livestock production.</p>","PeriodicalId":34434,"journal":{"name":"Environmental Science and Ecotechnology","volume":"23 ","pages":"100513"},"PeriodicalIF":14.0,"publicationDate":"2024-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11697712/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142932702","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Groundwater electro-bioremediation via diffuse electro-conductive zones: A critical review.
IF 14 1区 环境科学与生态学 Q1 ENVIRONMENTAL SCIENCES Pub Date : 2024-11-24 eCollection Date: 2025-01-01 DOI: 10.1016/j.ese.2024.100516
Federico Aulenta, Matteo Tucci, Carolina Cruz Viggi, Stefano Milia, Seyedmehdi Hosseini, Gianluigi Farru, Rajandrea Sethi, Carlo Bianco, Tiziana Tosco, Marios Ioannidis, Giulio Zanaroli, Riccardo Ruffo, Carlo Santoro, Ugo Marzocchi, Giorgio Cassiani, Luca Peruzzo

Microbial electrochemical technologies (MET) can remove a variety of organic and inorganic pollutants from contaminated groundwater. However, despite significant laboratory-scale successes over the past decade, field-scale applications remain limited. We hypothesize that enhancing the electrochemical conductivity of the soil surrounding electrodes could be a groundbreaking and cost-effective alternative to deploying numerous high-surface-area electrodes in short distances. This could be achieved by injecting environmentally safe iron- or carbon-based conductive (nano)particles into the aquifer. Upon transport and deposition onto soil grains, these particles create an electrically conductive zone that can be exploited to control and fine-tune the delivery of electron donors or acceptors over large distances, thereby driving the process more efficiently. Beyond extending the radius of influence of electrodes, these diffuse electro-conductive zones (DECZ) could also promote the development of syntrophic anaerobic communities that degrade contaminants via direct interspecies electron transfer (DIET). In this review, we present the state-of-the-art in applying conductive materials for MET and DIET-based applications. We also provide a comprehensive overview of the physicochemical properties of candidate electrochemically conductive materials and related injection strategies suitable for field-scale implementation. Finally, we illustrate and critically discuss current and prospective electrochemical and geophysical methods for measuring soil electronic conductivity-both in the laboratory and in the field-before and after injection practices, which are crucial for determining the extent of DECZ. This review article provides critical information for a robust design and in situ implementation of groundwater electro-bioremediation processes.

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引用次数: 0
Synergistic air pollution exposure elevates depression risk: A cohort study
IF 14 1区 环境科学与生态学 Q1 ENVIRONMENTAL SCIENCES Pub Date : 2024-11-22 DOI: 10.1016/j.ese.2024.100515
Yuqing Hao , Longzhu Xu , Meiyu Peng , Zhugen Yang , Weiqi Wang , Fanyu Meng
Depression is a leading mental health disorder worldwide, contributing substantially to the global disease burden. While emerging evidence suggests links between specific air pollutants and depression, the potential interactions among multiple pollutants remain underexplored. Here we show the influence of six common air pollutants on depressive symptoms among middle-aged and older Chinese adults. In single-pollutant models, a 10 μg m−3 increase in SO2, CO, PM10, and PM2.5 is associated with increased risks of depressive symptoms, with odds ratios (95% confidence intervals) of 1.276 (1.238–1.315), 1.007 (1.006–1.008), 1.066 (1.055–1.078), and 1.130 (1.108–1.153), respectively. In two-pollutant models, SO2 remains significantly associated with depressive symptoms after adjusting for other pollutants. Multi-pollutant models uncover synergistic effects, with SO2, CO, NO2, PM10, and PM2.5 exhibiting significant interactions, identifying SO2 as the primary driver of these associations. Mediation analyses further indicate that cognitive and physical impairments partially mediate the relationship between air pollution and depressive symptoms. These findings underscore the critical mental health impacts of air pollution and highlight the need for integrated air quality management strategies. Targeted mitigation of specific pollutants, particularly SO2, is expected to significantly enhance public mental health outcomes.
{"title":"Synergistic air pollution exposure elevates depression risk: A cohort study","authors":"Yuqing Hao ,&nbsp;Longzhu Xu ,&nbsp;Meiyu Peng ,&nbsp;Zhugen Yang ,&nbsp;Weiqi Wang ,&nbsp;Fanyu Meng","doi":"10.1016/j.ese.2024.100515","DOIUrl":"10.1016/j.ese.2024.100515","url":null,"abstract":"<div><div>Depression is a leading mental health disorder worldwide, contributing substantially to the global disease burden. While emerging evidence suggests links between specific air pollutants and depression, the potential interactions among multiple pollutants remain underexplored. Here we show the influence of six common air pollutants on depressive symptoms among middle-aged and older Chinese adults. In single-pollutant models, a 10 μg m<sup>−3</sup> increase in SO<sub>2</sub>, CO, PM<sub>10</sub>, and PM<sub>2.5</sub> is associated with increased risks of depressive symptoms, with odds ratios (95% confidence intervals) of 1.276 (1.238–1.315), 1.007 (1.006–1.008), 1.066 (1.055–1.078), and 1.130 (1.108–1.153), respectively. In two-pollutant models, SO<sub>2</sub> remains significantly associated with depressive symptoms after adjusting for other pollutants. Multi-pollutant models uncover synergistic effects, with SO<sub>2</sub>, CO, NO<sub>2</sub>, PM<sub>10</sub>, and PM<sub>2.5</sub> exhibiting significant interactions, identifying SO<sub>2</sub> as the primary driver of these associations. Mediation analyses further indicate that cognitive and physical impairments partially mediate the relationship between air pollution and depressive symptoms. These findings underscore the critical mental health impacts of air pollution and highlight the need for integrated air quality management strategies. Targeted mitigation of specific pollutants, particularly SO<sub>2</sub>, is expected to significantly enhance public mental health outcomes.</div></div>","PeriodicalId":34434,"journal":{"name":"Environmental Science and Ecotechnology","volume":"23 ","pages":"Article 100515"},"PeriodicalIF":14.0,"publicationDate":"2024-11-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142746566","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Augmented machine learning for sewage quality assessment with limited data 利用有限数据进行污水质量评估的增强型机器学习
IF 14 1区 环境科学与生态学 Q1 ENVIRONMENTAL SCIENCES Pub Date : 2024-11-17 DOI: 10.1016/j.ese.2024.100512
Jia-Qiang Lv , Wan-Xin Yin , Jia-Min Xu , Hao-Yi Cheng , Zhi-Ling Li , Ji-Xian Yang , Ai-Jie Wang , Hong-Cheng Wang
Physical, chemical, and biological processes within sewers significantly alter sewage composition during conveyance. This leads to the formation of sulfide and methane—compounds that contribute to sewer corrosion and greenhouse gas emissions. Reliable modeling of these compounds is essential for effective sewer management, but the development of machine learning (ML) models is hindered by differences in data accessibility and sampling frequencies of water quality variables. Here we present a mechanistically enhanced hybrid (ME-Hybrid) model that combines mechanistic modeling with data-driven approaches. This model harmonizes datasets with varying sampling frequencies and generates synthetic samples for ML training, thereby enhancing the monitoring of methane and sulfide in sewers. The optimal ME-Hybrid model integrates the backpropagation neural network with mechanistic frequency harmonization. We demonstrate that the ME-Hybrid model outperforms pure ML and linear interpolation in capturing fluctuating trends and extremes of sulfide concentrations, achieving a coefficient of determination (R2) of 0.94. Synthetic samples generated through mechanistic augmentation closely approximate real samples in modeling performance, statistical distribution, and data structure. This enables the model to maintain high predictive accuracy (R2 > 0.76) for sulfide even when trained on only 50 % of the dataset. Additionally, the ME-Hybrid model successfully assesses sewer methane concentrations with an R2 of 0.94, validating its applicability and generalization ability. Our results provide a reliable methodological framework for modeling and prediction under data scarcity. By facilitating better monitoring and management of sewer systems, the ME-Hybrid model aids in the development of strategies that minimize environmental impacts, enhance urban resilience, and ultimately lead to sustainable urban water systems.
在输送过程中,下水道内的物理、化学和生物过程会显著改变污水成分。这导致硫化物和甲烷化合物的形成,从而造成下水道腐蚀和温室气体排放。这些化合物的可靠建模对于有效的下水道管理至关重要,但机器学习(ML)模型的开发却受到水质变量数据可获取性和采样频率差异的阻碍。在此,我们提出了一种机理增强型混合(ME-Hybrid)模型,该模型结合了机理建模和数据驱动方法。该模型可协调不同采样频率的数据集,并生成用于 ML 训练的合成样本,从而加强对下水道中甲烷和硫化物的监测。最佳 ME-Hybrid 模型集成了反向传播神经网络和机理频率协调。我们证明,ME-Hybrid 模型在捕捉硫化物浓度的波动趋势和极端值方面优于纯 ML 和线性插值,其判定系数 (R2) 达到 0.94。通过机理增强生成的合成样本在建模性能、统计分布和数据结构方面与真实样本非常接近。这使得该模型即使只在 50% 的数据集上进行训练,也能保持较高的硫化物预测精度(R2 > 0.76)。此外,ME-Hybrid 模型成功评估了下水道甲烷浓度,R2 为 0.94,验证了其适用性和概括能力。我们的研究结果为数据稀缺情况下的建模和预测提供了可靠的方法框架。通过促进更好地监测和管理下水道系统,ME-Hybrid 模型有助于制定战略,最大限度地减少对环境的影响,提高城市的适应能力,并最终实现可持续的城市水系统。
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引用次数: 0
Accelerating the establishment of a new science-policy panel to address the triple planetary crisis 加快建立新的科学政策小组,应对三重地球危机
IF 14 1区 环境科学与生态学 Q1 ENVIRONMENTAL SCIENCES Pub Date : 2024-11-01 DOI: 10.1016/j.ese.2024.100498
Junyu Wang, Fengchang Wu, Huan Zhong, Xiaoli Zhao, Zhi Tang, Lin Niu, Xia Wang
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引用次数: 0
Rapid identification of antibiotic resistance gene hosts by prescreening ARG-like reads 通过预筛选类似 ARG 的读数快速识别抗生素耐药基因宿主
IF 14 1区 环境科学与生态学 Q1 ENVIRONMENTAL SCIENCES Pub Date : 2024-10-29 DOI: 10.1016/j.ese.2024.100502
Zhiguo Su , April Z. Gu , Donghui Wen , Feifei Li , Bei Huang , Qinglin Mu , Lyujun Chen
Effective risk assessment and control of environmental antibiotic resistance depend on comprehensive information about antibiotic resistance genes (ARGs) and their microbial hosts. Advances in sequencing technologies and bioinformatics have enabled the identification of ARG hosts using metagenome-assembled contigs and genomes. However, these approaches often suffer from information loss and require extensive computational resources. Here we introduce a bioinformatic strategy that identifies ARG hosts by prescreening ARG-like reads (ALRs) directly from total metagenomic datasets. This ALR-based method offers several advantages: (1) it enables the detection of low-abundance ARG hosts with higher accuracy in complex environments; (2) it establishes a direct relationship between the abundance of ARGs and their hosts; and (3) it reduces computation time by approximately 44–96% compared to strategies relying on assembled contigs and genomes. We applied our ALR-based strategy alongside two traditional methods to investigate a typical human-impacted environment. The results were consistent across all methods, revealing that ARGs are predominantly carried by Gammaproteobacteria and Bacilli, and their distribution patterns may indicate the impact of wastewater discharge on coastal resistome. Our strategy provides rapid and accurate identification of antibiotic-resistant bacteria, offering valuable insights for the high-throughput surveillance of environmental antibiotic resistance. This study further expands our knowledge of ARG-related risk management in future.
有效的风险评估和环境抗生素耐药性控制取决于有关抗生素耐药性基因(ARGs)及其微生物宿主的全面信息。测序技术和生物信息学的进步使得利用元基因组组装的等位基因和基因组识别 ARG 宿主成为可能。然而,这些方法往往会造成信息丢失,而且需要大量的计算资源。在这里,我们介绍了一种生物信息学策略,通过直接从元基因组数据集中预选类似 ARG 的读数(ALR)来鉴定 ARG 宿主。这种基于 ALR 的方法有几个优点:(1)它能在复杂环境中更准确地检测低丰度 ARG 宿主;(2)它在 ARG 的丰度和宿主之间建立了直接的关系;(3)与依赖于组装的等位基因组和基因组的策略相比,它减少了大约 44-96% 的计算时间。我们将基于 ALR 的策略与两种传统方法一起用于研究典型的人类影响环境。所有方法的结果都是一致的,揭示出 ARGs 主要由伽马蛋白菌和芽孢杆菌携带,它们的分布模式可能表明废水排放对沿岸抗性组的影响。我们的策略能快速准确地鉴定抗生素耐药菌,为高通量监测环境抗生素耐药性提供了宝贵的见解。这项研究进一步拓展了我们对未来 ARG 相关风险管理的认识。
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Environmental Science and Ecotechnology
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