dihedral angles, including the phi (φ) and psi (ψ) and backbone conformation using the PROCHECK module of the PDB Sum server was performed. The domains and key amino acids involved in protein structure were studied by the Pfam and Interpro softwares. Results: Analysis of the amino acid content of the Bap protein revealed the absence of Arg and Cys in the protein structure. Our Bap protein exhibited ~99.6% identity with other Bap sequences in the GenBank database. Stereochemical simulation identified 19 antiparallel β-sheets with two small α-helices. The N-terminal of Bap protein formed oligomers that mediate cellular adhesion. Conclusion: This study adds considerable information about Bap protein 3D structure, its conformation, domain analysis, and amino acids involved in cellular attachment.
{"title":"In silico Characterization of Biofilm-Associated Protein (Bap) Identified in a Multi-drug Resistant Acinetobacter baumannii Clinical Isolate","authors":"Prof. M.R Shakibaie","doi":"10.52547/jommid.9.4.210","DOIUrl":"https://doi.org/10.52547/jommid.9.4.210","url":null,"abstract":"dihedral angles, including the phi (φ) and psi (ψ) and backbone conformation using the PROCHECK module of the PDB Sum server was performed. The domains and key amino acids involved in protein structure were studied by the Pfam and Interpro softwares. Results: Analysis of the amino acid content of the Bap protein revealed the absence of Arg and Cys in the protein structure. Our Bap protein exhibited ~99.6% identity with other Bap sequences in the GenBank database. Stereochemical simulation identified 19 antiparallel β-sheets with two small α-helices. The N-terminal of Bap protein formed oligomers that mediate cellular adhesion. Conclusion: This study adds considerable information about Bap protein 3D structure, its conformation, domain analysis, and amino acids involved in cellular attachment.","PeriodicalId":34460,"journal":{"name":"Journal of Medical Microbiology and Infectious Diseases","volume":"45 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"87324269","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Shamsi Saad Shamsi, Abdelkader A. Elzen, Khadija M. Ahmad
Burkholderia cepacia Complex, an Emerging Nosocomial Pathogen at Health Care Facilities in Sebha, Libya Shamsi Saad Shamsi , Abdelkader A. Elzen , Khadija M. Ahmad 4 Department of Plant Science, Microbiology Program, Research laboratory, Faculty of Science, Sebha University; Department of Microbiology, Faculty of Science, Sebha University, Sebha, Libya; Department of Microbiology, Faculty of Medicine, Sebha University, Sebha, Libya; Department of Microbiology, Sebha medical center, Sebha
{"title":"Burkholderia cepacia Complex, an Emerging Nosocomial Pathogen at Health Care Facilities in Sebha, Libya","authors":"Shamsi Saad Shamsi, Abdelkader A. Elzen, Khadija M. Ahmad","doi":"10.52547/jommid.9.4.178","DOIUrl":"https://doi.org/10.52547/jommid.9.4.178","url":null,"abstract":"Burkholderia cepacia Complex, an Emerging Nosocomial Pathogen at Health Care Facilities in Sebha, Libya Shamsi Saad Shamsi , Abdelkader A. Elzen , Khadija M. Ahmad 4 Department of Plant Science, Microbiology Program, Research laboratory, Faculty of Science, Sebha University; Department of Microbiology, Faculty of Science, Sebha University, Sebha, Libya; Department of Microbiology, Faculty of Medicine, Sebha University, Sebha, Libya; Department of Microbiology, Sebha medical center, Sebha","PeriodicalId":34460,"journal":{"name":"Journal of Medical Microbiology and Infectious Diseases","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"90821241","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Prakash Gyandev Gondode, A. Garg, S. Sahoo, Ankit Sharma
The quandary over Antiviral Therapy for a COVID-19 Patient with Glucose-6Phosphate Dehydrogenase Deficiency, Hypertension, and Resolved Hepatitis B Infection: A Case Report Prakash Gyandev Gondode , Ankita Garg , Satyajeet Sahoo , Ankit Sharma Department of Anesthesiology, All India Institute of Medical Sciences, Nagpur, India; Department of Anaesthesiology, Dr Babasaheb Ambedkar Hospital, Rohini, Delhi, India; Department of Pulmonology, All India Institute of Medical Sciences, Nagpur, India; Department of Onco-Anesthesia, IRCH, All India Institute of Medical Sciences, Delhi, India
{"title":"The quandary over Antiviral Therapy for a COVID-19 Patient with Glucose-6-Phosphate Dehydrogenase Deficiency, Hypertension, and Resolved Hepatitis B Infection: A Case Report","authors":"Prakash Gyandev Gondode, A. Garg, S. Sahoo, Ankit Sharma","doi":"10.52547/jommid.9.4.221","DOIUrl":"https://doi.org/10.52547/jommid.9.4.221","url":null,"abstract":"The quandary over Antiviral Therapy for a COVID-19 Patient with Glucose-6Phosphate Dehydrogenase Deficiency, Hypertension, and Resolved Hepatitis B Infection: A Case Report Prakash Gyandev Gondode , Ankita Garg , Satyajeet Sahoo , Ankit Sharma Department of Anesthesiology, All India Institute of Medical Sciences, Nagpur, India; Department of Anaesthesiology, Dr Babasaheb Ambedkar Hospital, Rohini, Delhi, India; Department of Pulmonology, All India Institute of Medical Sciences, Nagpur, India; Department of Onco-Anesthesia, IRCH, All India Institute of Medical Sciences, Delhi, India","PeriodicalId":34460,"journal":{"name":"Journal of Medical Microbiology and Infectious Diseases","volume":"23 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"79223638","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Saber Basiri, B. Khalesi, S. D. Mousavi-Nasab, Zahra Ivani, M. Ghaderi
High Frequency of Salivirus in Pediatric Patients with Acute Gastroenteritis Saber Basiri , Bahman Khalesi , Seyed Dawood Mousavi-Nasab , Zahra Ivani , Mostafa Ghaderi Department of Microbiology, Karaj Branch, Islamic Azad University, Karaj, Iran; Department of Research and Production of Poultry Viral Vaccine, Razi Vaccine and Serum Research Institute, Agricultural Research Education and Extension Organization (AREEO), Karaj, Iran; Department of Research and Development, Production and Research Complex, Pasteur Institute of Iran, Tehran, Iran; Department of Science, Razi Vaccine and Serum Research Institute
{"title":"High Frequency of Salivirus in Pediatric Patients with Acute Gastroenteritis","authors":"Saber Basiri, B. Khalesi, S. D. Mousavi-Nasab, Zahra Ivani, M. Ghaderi","doi":"10.52547/jommid.9.4.191","DOIUrl":"https://doi.org/10.52547/jommid.9.4.191","url":null,"abstract":"High Frequency of Salivirus in Pediatric Patients with Acute Gastroenteritis Saber Basiri , Bahman Khalesi , Seyed Dawood Mousavi-Nasab , Zahra Ivani , Mostafa Ghaderi Department of Microbiology, Karaj Branch, Islamic Azad University, Karaj, Iran; Department of Research and Production of Poultry Viral Vaccine, Razi Vaccine and Serum Research Institute, Agricultural Research Education and Extension Organization (AREEO), Karaj, Iran; Department of Research and Development, Production and Research Complex, Pasteur Institute of Iran, Tehran, Iran; Department of Science, Razi Vaccine and Serum Research Institute","PeriodicalId":34460,"journal":{"name":"Journal of Medical Microbiology and Infectious Diseases","volume":"47 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"82857186","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
T. Rostami, N. Alijani, A. Kiumarsi, S. Rad, S. Mirhoseini, Mohammadreza Rostami, A. Hesabi, S. Mousavi, S. Mousavi
Tocilizumab in Post Hematopoietic Stem Cell Transplant COVID-19: A Pediatric Case Report Tahereh Rostami , Neda Alijani , Azadeh Kiumarsi , Soroush Rad , Seied Amirhosein Mirhoseini , Mohammadreza Rostami , Amir Hesabi , Seyed Ali Mousavi , Seied Asadollah Mousavi Department of Pediatric Cell Therapy, Research Institute for Oncology, Hematology and Cell Therapy, Tehran University of Medical Sciences, Tehran, Iran; Department of Infectious Diseases, Research Institute for Oncology, Hematology and Cell Therapy, Tehran University of Medical Sciences, Tehran, Iran; Research Institute for Oncology, Hematology and Cell Therapy, Tehran University of Medical Sciences, Tehran, Iran
{"title":"Tocilizumab in Post Hematopoietic Stem Cell Transplant COVID-19: A Pediatric Case Report","authors":"T. Rostami, N. Alijani, A. Kiumarsi, S. Rad, S. Mirhoseini, Mohammadreza Rostami, A. Hesabi, S. Mousavi, S. Mousavi","doi":"10.52547/jommid.9.4.225","DOIUrl":"https://doi.org/10.52547/jommid.9.4.225","url":null,"abstract":"Tocilizumab in Post Hematopoietic Stem Cell Transplant COVID-19: A Pediatric Case Report Tahereh Rostami , Neda Alijani , Azadeh Kiumarsi , Soroush Rad , Seied Amirhosein Mirhoseini , Mohammadreza Rostami , Amir Hesabi , Seyed Ali Mousavi , Seied Asadollah Mousavi Department of Pediatric Cell Therapy, Research Institute for Oncology, Hematology and Cell Therapy, Tehran University of Medical Sciences, Tehran, Iran; Department of Infectious Diseases, Research Institute for Oncology, Hematology and Cell Therapy, Tehran University of Medical Sciences, Tehran, Iran; Research Institute for Oncology, Hematology and Cell Therapy, Tehran University of Medical Sciences, Tehran, Iran","PeriodicalId":34460,"journal":{"name":"Journal of Medical Microbiology and Infectious Diseases","volume":"96 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"85377213","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
N. Bolourchi, O. Azizi, M. Rohani, Soha Seyyedi Abhari, Armaghan Soltani Shirazi, F. Badmasti
Identification of Carbapenemase within Class 1 Integron Structure in Intrinsically Colistin-resistant Enterobacteriaceae Negin Bolourchi , Omid Azizi , Mahdi Rohani , Soha Seyyedi Abhari , Armaghan Soltani Shirazi , Farzad Badmasti * Department of Bacteriology, Pasteur Institute of Iran, Tehran, Iran; Health Sciences Research Center, Torbat Heydariyeh University of Medical Sciences; Microbiology Research Center (MRC), Pasteur Institute of Iran
{"title":"Identification of Carbapenemase within Class 1 Integron Structure in Intrinsically Colistin-resistant Enterobacteriaceae","authors":"N. Bolourchi, O. Azizi, M. Rohani, Soha Seyyedi Abhari, Armaghan Soltani Shirazi, F. Badmasti","doi":"10.52547/jommid.9.4.203","DOIUrl":"https://doi.org/10.52547/jommid.9.4.203","url":null,"abstract":"Identification of Carbapenemase within Class 1 Integron Structure in Intrinsically Colistin-resistant Enterobacteriaceae Negin Bolourchi , Omid Azizi , Mahdi Rohani , Soha Seyyedi Abhari , Armaghan Soltani Shirazi , Farzad Badmasti * Department of Bacteriology, Pasteur Institute of Iran, Tehran, Iran; Health Sciences Research Center, Torbat Heydariyeh University of Medical Sciences; Microbiology Research Center (MRC), Pasteur Institute of Iran","PeriodicalId":34460,"journal":{"name":"Journal of Medical Microbiology and Infectious Diseases","volume":"25 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"75997504","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Saba Hariri Monfared, Mina Yaghoub Kazemi, Fahimeh Nemati Mansoor, Mahnaz Mohammadi
Saba Hariri Monfared , Mina Yaghoub Kazemi , Fahimeh Nemati Mansour , Mahnaz Mohammadi M.Sc, Department of Biotechnology and Microbiology, Medicine Branch, Islamic Azad University, Tehran, Iran; Associate Professor, Department of Biotechnology, Medicine Branch, Islamic Azad University, Tehran, Iran; Associate Professor, Department of Biology, Faculty of Biological Sciences, Islamshahr Branch, Islamic Azad University, Islamshahr, Iran
{"title":"Expression Analysis of MicroRNAs, miR-20a, miR-30a, miR-210, and miR-874 in Helicobacter pylori-infected patients with or without Gastric Cancer","authors":"Saba Hariri Monfared, Mina Yaghoub Kazemi, Fahimeh Nemati Mansoor, Mahnaz Mohammadi","doi":"10.52547/jommid.9.4.185","DOIUrl":"https://doi.org/10.52547/jommid.9.4.185","url":null,"abstract":"Saba Hariri Monfared , Mina Yaghoub Kazemi , Fahimeh Nemati Mansour , Mahnaz Mohammadi M.Sc, Department of Biotechnology and Microbiology, Medicine Branch, Islamic Azad University, Tehran, Iran; Associate Professor, Department of Biotechnology, Medicine Branch, Islamic Azad University, Tehran, Iran; Associate Professor, Department of Biology, Faculty of Biological Sciences, Islamshahr Branch, Islamic Azad University, Islamshahr, Iran","PeriodicalId":34460,"journal":{"name":"Journal of Medical Microbiology and Infectious Diseases","volume":"256 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"73106298","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
G. Tayh, N. A. Al Laham, Imene Fhoula, Nahed Abedelateef, Mohamed D El-laham, Abed Elkader Elottol, K. Ben Slama
Frequency and Antibiotics Resistance of Extended-Spectrum Beta-Lactamase (ESBLs) Producing Escherichia coli and Klebsiella pneumoniae Isolated from Patients in Gaza Strip, Palestine Ghassan Tayh 7* , Nahed Al Laham , Imene Fhoula , Nahed Abedelateef , Mohamed El-Laham , Abed Elkader Elottol , Karim Ben Slama 6 Laboratoire des Microorganismes et Biomolécules Actives, Faculté des Sciences de Tunis, Université de Tunis El Manar, 2092 Tunis, Tunisie; Department of Laboratory Medicine, Faculty of Applied Medical Sciences, AlAzhar University-Gaza, Palestine; Department of Biological Science, Al-Aqsa University –Gaza, Palestine; Department of Biological Science and Medical Technology, Israa University – Gaza, Palestine; Medical Science Department, University College of Science and Technology Gaza, Palestine; 6 Institut Supérieur des Sciences Biologiques Appliquées de TunisUniversité de Tunis El Manar, 1006 Tunis, Tunisie;Service de Microbiologie et d’Immunologie, Ecole Nationale de Médecine Vétérinaire, Univ. Manouba, Sidi Thabet, Tunisie
{"title":"Frequency and Antibiotics Resistance of Extended-Spectrum Beta-Lactamase (ESBLs) Producing Escherichia coli and Klebsiella pneumoniae Isolated from Patients in Gaza Strip, Palestine","authors":"G. Tayh, N. A. Al Laham, Imene Fhoula, Nahed Abedelateef, Mohamed D El-laham, Abed Elkader Elottol, K. Ben Slama","doi":"10.52547/jommid.9.3.133","DOIUrl":"https://doi.org/10.52547/jommid.9.3.133","url":null,"abstract":"Frequency and Antibiotics Resistance of Extended-Spectrum Beta-Lactamase (ESBLs) Producing Escherichia coli and Klebsiella pneumoniae Isolated from Patients in Gaza Strip, Palestine Ghassan Tayh 7* , Nahed Al Laham , Imene Fhoula , Nahed Abedelateef , Mohamed El-Laham , Abed Elkader Elottol , Karim Ben Slama 6 Laboratoire des Microorganismes et Biomolécules Actives, Faculté des Sciences de Tunis, Université de Tunis El Manar, 2092 Tunis, Tunisie; Department of Laboratory Medicine, Faculty of Applied Medical Sciences, AlAzhar University-Gaza, Palestine; Department of Biological Science, Al-Aqsa University –Gaza, Palestine; Department of Biological Science and Medical Technology, Israa University – Gaza, Palestine; Medical Science Department, University College of Science and Technology Gaza, Palestine; 6 Institut Supérieur des Sciences Biologiques Appliquées de TunisUniversité de Tunis El Manar, 1006 Tunis, Tunisie;Service de Microbiologie et d’Immunologie, Ecole Nationale de Médecine Vétérinaire, Univ. Manouba, Sidi Thabet, Tunisie","PeriodicalId":34460,"journal":{"name":"Journal of Medical Microbiology and Infectious Diseases","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"82340258","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
L. R. Lopes, Antônio Carlos da Silva Júnior, Paulo Bandiera-Paiva, J. Casseb
Global Variability of V3 Loop Tetrapeptide Motif: a Concern for HIV-1 Neutralizing Antibodies-based Vaccine Design and Antiretroviral Therapy Luciano Rodrigo Lopes , Antonio Carlos da Silva Junior , Paulo Bandiera-Paiva , Jorge Casseb Bioinformatics and Bio-Data Science Division, Health Informatics Department, Universidade Federal de São Paulo– UNIFESP, São Paulo, SP, Brazil; Institute of Tropical Medicine of Sao Paulo University of Sao Paulo, Laboratory of Medical Investigation LIM-56 / Faculty of Medicine –USP
V3环四肽基序的全球变异:基于HIV-1中和抗体的疫苗设计和抗逆转录病毒治疗的关注Luciano Rodrigo Lopes, Antonio Carlos da Silva Junior, Paulo Bandiera-Paiva, Jorge Casseb卫生信息部生物信息学和生物数据科学部，圣保罗联邦大学- UNIFESP，圣保罗，SP，巴西;圣保罗大学热带医学研究所，医学调查实验室LIM-56 /医学院
{"title":"Global Variability of V3 Loop Tetrapeptide Motif: a Concern for HIV-1 Neutralizing Antibodies-based Vaccine Design and Antiretroviral Therapy","authors":"L. R. Lopes, Antônio Carlos da Silva Júnior, Paulo Bandiera-Paiva, J. Casseb","doi":"10.52547/jommid.9.3.108","DOIUrl":"https://doi.org/10.52547/jommid.9.3.108","url":null,"abstract":"Global Variability of V3 Loop Tetrapeptide Motif: a Concern for HIV-1 Neutralizing Antibodies-based Vaccine Design and Antiretroviral Therapy Luciano Rodrigo Lopes , Antonio Carlos da Silva Junior , Paulo Bandiera-Paiva , Jorge Casseb Bioinformatics and Bio-Data Science Division, Health Informatics Department, Universidade Federal de São Paulo– UNIFESP, São Paulo, SP, Brazil; Institute of Tropical Medicine of Sao Paulo University of Sao Paulo, Laboratory of Medical Investigation LIM-56 / Faculty of Medicine –USP","PeriodicalId":34460,"journal":{"name":"Journal of Medical Microbiology and Infectious Diseases","volume":"49 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"82320483","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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