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Simulation of Radiation-Induced DNA Damage and Protection by Histones Using the Code RITRACKS 使用 RITRACKS 代码模拟辐射诱导的 DNA 损伤和组蛋白的保护作用
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-06-05 DOI: 10.3390/biotech13020017
Ianik Plante, Devany W. West, Jason Weeks, Viviana I. Risca
(1) Background: DNA damage is of great importance in the understanding of the effects of ionizing radiation. Various types of DNA damage can result from exposure to ionizing radiation, with clustered types considered the most important for radiobiological effects. (2) Methods: The code RITRACKS (Relativistic Ion Tracks), a program that simulates stochastic radiation track structures, was used to simulate DNA damage by photons and ions spanning a broad range of linear energy transfer (LET) values. To perform these simulations, the transport code was modified to include cross sections for the interactions of ions or electrons with DNA and amino acids for ionizations, dissociative electron attachment, and elastic collisions. The radiochemistry simulations were performed using a step-by-step algorithm that follows the evolution of all particles in time, including reactions between radicals and DNA structures and amino acids. Furthermore, detailed DNA damage events, such as base pair positions, DNA fragment lengths, and fragment yields, were recorded. (3) Results: We report simulation results using photons and the ions 1H+, 4He2+, 12C6+, 16O8+, and 56Fe26+ at various energies, covering LET values from 0.3 to 164 keV/µm, and performed a comparison with other codes and experimental results. The results show evidence of DNA protection from damage at its points of contacts with histone proteins. (4) Conclusions: RITRACKS can provide a framework for studying DNA damage from a variety of ionizing radiation sources with detailed representations of DNA at the atomic scale, DNA-associated proteins, and resulting DNA damage events and statistics, enabling a broader range of future comparisons with experiments such as those based on DNA sequencing.
(1) 背景:DNA 损伤对于了解电离辐射的影响非常重要。暴露于电离辐射可导致各种类型的 DNA 损伤,其中聚类损伤被认为对辐射生物学效应最为重要。(2) 方法:RITRACKS(相对论离子轨道)代码是一个模拟随机辐射轨道结构的程序,用于模拟光子和离子对DNA的损伤,其线性能量传递(LET)值范围很广。为了进行这些模拟,对传输代码进行了修改,以包括离子或电子与 DNA 和氨基酸在电离、离解电子附着和弹性碰撞时的相互作用截面。放射化学模拟采用逐步算法,跟踪所有粒子的时间演变,包括自由基与 DNA 结构和氨基酸之间的反应。此外,还记录了详细的 DNA 损伤事件,如碱基对位置、DNA 片段长度和片段产量。(3) 结果:我们报告了在不同能量下使用光子和离子 1H+、4He2+、12C6+、16O8+ 和 56Fe26+ 的模拟结果,涵盖了从 0.3 到 164 keV/µm 的 LET 值,并与其他代码和实验结果进行了比较。结果表明,有证据表明 DNA 与组蛋白的接触点受到了保护,免受损伤。(4) 结论:RITRACKS 可为研究各种电离辐射源造成的 DNA 损伤提供一个框架,详细描述原子尺度上的 DNA、DNA 相关蛋白以及由此产生的 DNA 损伤事件和统计数据,从而在未来与 DNA 测序等实验进行更广泛的比较。
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引用次数: 0
In Silico and In Vitro Evaluation of the Antifungal Activity of a New Chromone Derivative against Candida spp. 新型铬酮衍生物对白色念珠菌抗真菌活性的硅学和体外评估
IF 2.7 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-05-25 DOI: 10.3390/biotech13020016
Gleycyelly Rodrigues Araújo, Palloma Christine Queiroga Gomes da Costa, Paula Lima Nogueira, Danielle da Nóbrega Alves, Alana Rodrigues Ferreira, Pablo R da Silva, Jéssica Cabral de Andrade, Natália F de Sousa, Paulo Bruno Araujo Loureiro, Marianna Vieira Sobral, Damião P Sousa, Marcus Tullius Scotti, Ricardo Dias de Castro, Luciana Scotti

Candida species are frequently implicated in the development of both superficial and invasive fungal infections, which can impact vital organs. In the quest for novel strategies to combat fungal infections, there has been growing interest in exploring synthetic and semi-synthetic products, particularly chromone derivatives, renowned for their antimicrobial properties. In the analysis of the antifungal activity of the compound (E)-benzylidene-chroman-4-one against Candida, in silico and laboratory tests were performed to predict possible mechanisms of action pathways, and in vitro tests were performed to determine antifungal activity (MIC and MFC), to verify potential modes of action on the fungal cell membrane and wall, and to assess cytotoxicity in human keratinocytes. The tested compound exhibited predicted affinity for all fungal targets, with the highest predicted affinity observed for thymidylate synthase (-102.589 kJ/mol). MIC and CFM values ranged from 264.52 μM (62.5 μg/mL) to 4232.44 μM (1000 μg/mL). The antifungal effect likely occurs due to the action of the compound on the plasma membrane. Therefore, (E)-benzylidene-chroman-4-one showed fungicidal-like activity against Candida spp., possibly targeting the plasma membrane.

念珠菌经常会引起表皮和侵袭性真菌感染,从而影响重要器官。在寻求抗真菌感染新策略的过程中,人们对合成和半合成产品,尤其是以抗菌性能著称的铬酮衍生物的兴趣与日俱增。在分析化合物 (E)-benzylidene-chroman-4-one 对白色念珠菌的抗真菌活性时,进行了硅学和实验室测试以预测可能的作用机制途径,并进行了体外测试以确定抗真菌活性(MIC 和 MFC),验证对真菌细胞膜和细胞壁的潜在作用模式,以及评估对人类角质细胞的细胞毒性。受试化合物对所有真菌靶标都表现出预测亲和力,其中对胸腺嘧啶酸合成酶的预测亲和力最高(-102.589 kJ/mol)。MIC 和 CFM 值从 264.52 μM(62.5 μg/mL)到 4232.44 μM(1000 μg/mL)不等。抗真菌作用可能是由于化合物对质膜的作用。因此,(E)-亚苄基-色满-4-酮对念珠菌属具有类似杀真菌的活性,可能是以质膜为靶点。
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引用次数: 0
Valorization of Wheat Bran by Co-Cultivation of Fungi with Integrated Hydrolysis to Provide Sugars and Animal Feed 通过联合培养真菌和综合水解来实现小麦麸皮的增值,从而提供糖分和动物饲料
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-05-18 DOI: 10.3390/biotech13020015
Fabian Mittermeier, Fabienne Fischer, Sebastian Hauke, Peter Hirschmann, Dirk Weuster-Botz
The enzymatic hydrolysis of agricultural residues like wheat bran enables the valorization of otherwise unused carbon sources for biotechnological processes. The co-culture of Aspergillus niger and Trichoderma reesei with wheat bran particles as substrate produces an enzyme set consisting of xylanases, amylases, and cellulases that is suitable to degrade lignocellulosic biomass to sugar monomers (D-glucose, D-xylose, and L-arabinose). An integrated one-pot process for enzyme production followed by hydrolysis in stirred tank bioreactors resulted in hydrolysates with overall sugar concentrations of 32.3 g L−1 and 24.4 g L−1 at a 25 L and a 1000 L scale, respectively, within 86 h. Furthermore, the residual solid biomass consisting of fermented wheat bran with protein-rich fungal mycelium displays improved nutritional properties for usage as animal feed due to its increased content of sugars, protein, and fat.
对麦麸等农业残留物进行酶水解,可使生物技术工艺中原本未使用的碳源价值化。黑曲霉和毛霉以麦麸颗粒为底物进行共培养,可产生由木糖酶、淀粉酶和纤维素酶组成的酶集,适合将木质纤维素生物质降解为糖单体(D-葡萄糖、D-木糖和 L-阿拉伯糖)。通过在搅拌罐生物反应器中进行酶制剂生产和水解的一体化单锅工艺,在 25 升和 1000 升的规模下,水解产物的总糖浓度在 86 小时内分别达到 32.3 克/升和 24.4 克/升。
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引用次数: 0
Challenges for the Post-Market Environmental Monitoring in the European Union Imposed by Novel Applications of Genetically Modified and Genome-Edited Organisms 转基因生物和基因组编辑生物的新应用对欧盟上市后环境监测带来的挑战
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-05-15 DOI: 10.3390/biotech13020014
M. Dolezel, Andreas Lang, Anita Greiter, Marianne Miklau, M. Eckerstorfer, A. Heissenberger, Eva Willée, W. Züghart
Information on the state of the environment is important to achieve the objectives of the European Green Deal, including the EU’s Biodiversity Strategy for 2030. The existing regulatory provisions for genetically modified organisms (GMOs) foresee an obligatory post-market environmental monitoring (PMEM) of potential adverse effects upon release into the environment. So far, GMO monitoring activities have focused on genetically modified crops. With the advent of new genomic techniques (NGT), novel GMO applications are being developed and may be released into a range of different, non-agricultural environments with potential implications for ecosystems and biodiversity. This challenges the current monitoring concepts and requires adaptation of existing monitoring programs to meet monitoring requirements. While the incorporation of existing biodiversity monitoring programs into GMO monitoring at the national level is important, additional monitoring activities will also be required. Using case examples, we highlight that monitoring requirements for novel GMO applications differ from those of GM crop plants previously authorized for commercial use in the European Union.
有关环境状况的信息对于实现欧洲绿色交易的目标,包括欧盟 2030 年生物多样性战 略非常重要。现有的转基因生物(GMOs)监管规定要求对释放到环境中的潜在不利影响进行强制性的上市后环境监测(PMEM)。迄今为止,转基因生物监测活动主要集中在转基因作物上。随着新基因组技术(NGT)的出现,新的转基因生物应用正在开发中,并可能被释放到一系列不同的非农业环境中,对生态系统和生物多样性产生潜在影响。这对当前的监测概念提出了挑战,需要调整现有的监测计划以满足监测要求。将现有的生物多样性监测计划纳入国家层面的转基因生物监测固然重要,但也需要开展额外的监测活动。通过案例,我们强调了新型转基因生物应用的监测要求与欧盟以前授权商业使用的转基因作物植物的监测要求不同。
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引用次数: 0
Proteases: Importance, Immobilization Protocols, Potential of Activated Carbon as Support, and the Importance of Modifying Supports for Immobilization. 蛋白酶:蛋白酶:重要性、固定化方案、活性炭作为支持物的潜力以及修改支持物对固定化的重要性。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-04-30 DOI: 10.3390/biotech13020013
Mateus Pereira Flores Santos, Evaldo Cardozo de Souza Junior, Carolina Villadóniga, Diego Vallés, Susana Castro-Sowinski, Renata Cristina Ferreira Bonomo, Cristiane Martins Veloso

Although enzymes have been used for thousands of years, their application in industrial processes has gained importance since the 20th century due to technological and scientific advances in several areas, including biochemistry [...].

虽然酶的使用已有数千年历史,但自 20 世纪以来,由于生物化学等多个领域的技术和科学进步,酶在工业流程中的应用变得越来越重要 [...] 。
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引用次数: 0
Eco-Friendly Sanitization of Indoor Environments: Effectiveness of Thyme Essential Oil in Controlling Bioaerosol Levels and Disinfecting Surfaces. 生态友好型室内环境消毒:百里香精油在控制生物气溶胶水平和表面消毒方面的功效。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-04-26 DOI: 10.3390/biotech13020012
Daniela Sateriale, Giuseppina Forgione, Giuseppa Anna De Cristofaro, Leonardo Continisio, Chiara Pagliuca, Roberta Colicchio, Paola Salvatore, Marina Paolucci, Caterina Pagliarulo

Bioaerosols and pathogens in indoor workplaces and residential environments are the primary culprits of several infections. Techniques for sanitizing air and surfaces typically involve the use of UV rays or chemical sanitizers, which may release chemical residues harmful to human health. Essential oils, natural substances derived from plants, which exhibit broad antimicrobial properties, could be a viable alternative for air and surface sanitation. The objective of this study has been to investigate the efficacy of thyme essential oil (TEO) in environmental sanitation processes. In Vitro assays through agar well diffusion, disk volatilization and tube dilution methods revealed significant antimicrobial activity of TEO 100% against foodborne and environmental isolates, with both bacteriostatic/fungistatic and bactericidal/fungicidal effects. Therefore, aqueous solutions of TEO 2.5% and 5% were formulated for air sanitation through nebulization and surface disinfection via direct contact. Bioaerosol samples and surface swabs were analyzed before and after sanitation, demonstrating the efficacy of aqueous solutions of TEO in reducing mesophilic and psychrophilic bacteria and environmental fungi levels in both air and on surfaces. The obtained results prove the antimicrobial potential of aqueous solutions of TEO in improving indoor air quality and surface cleanliness, suggesting thyme essential oil as an effective and safe natural sanitizer with minimal environmental impact compared to dangerous chemical disinfectants.

室内工作场所和居住环境中的生物气溶胶和病原体是导致多种感染的罪魁祸首。对空气和物体表面进行消毒的技术通常需要使用紫外线或化学消毒剂,而这些消毒剂可能会释放出对人体健康有害的化学残留物。精油是从植物中提取的天然物质,具有广泛的抗菌特性,可以作为空气和物体表面消毒的可行替代品。本研究旨在调查百里香精油(TEO)在环境卫生过程中的功效。通过琼脂井扩散法、盘式挥发法和试管稀释法进行的体外检测显示,百里香精油对食源性和环境分离菌具有显著的抗菌活性,既有抑菌/杀菌作用,也有杀菌/杀真菌作用。因此,我们配制了 2.5% 和 5% 的 TEO 水溶液,用于通过雾化进行空气消毒和通过直接接触进行表面消毒。对消毒前后的生物气溶胶样本和表面拭子进行了分析,结果表明 TEO 水溶液能有效降低空气和表面中的嗜中性和嗜心理细菌以及环境真菌的含量。研究结果证明了百里香精油水溶液在改善室内空气质量和表面清洁度方面的抗菌潜力,表明百里香精油是一种有效、安全的天然消毒剂,与危险的化学消毒剂相比,对环境的影响最小。
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引用次数: 0
Development of the 12-Base Short Dimeric Myogenetic Oligodeoxynucleotide That Induces Myogenic Differentiation. 开发可诱导肌分化的 12 碱基短二聚体肌遗传寡核苷酸
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-04-25 DOI: 10.3390/biotech13020011
Koji Umezawa, Rena Ikeda, Taiichi Sakamoto, Yuya Enomoto, Yuma Nihashi, Sayaka Shinji, Takeshi Shimosato, Hiroshi Kagami, Tomohide Takaya

A myogenetic oligodeoxynucleotide (myoDN), iSN04 (5'-AGA TTA GGG TGA GGG TGA-3'), is a single-stranded 18-base telomeric DNA that serves as an anti-nucleolin aptamer and induces myogenic differentiation, which is expected to be a nucleic acid drug for the prevention of disease-associated muscle wasting. To improve the drug efficacy and synthesis cost of myoDN, shortening the sequence while maintaining its structure-based function is a major challenge. Here, we report the novel 12-base non-telomeric myoDN, iMyo01 (5'-TTG GGT GGG GAA-3'), which has comparable myogenic activity to iSN04. iMyo01 as well as iSN04 promoted myotube formation of primary-cultured human myoblasts with upregulation of myogenic gene expression. Both iMyo01 and iSN04 interacted with nucleolin, but iMyo01 did not bind to berberine, the isoquinoline alkaloid that stabilizes iSN04. Nuclear magnetic resonance revealed that iMyo01 forms a G-quadruplex structure despite its short sequence. Native polyacrylamide gel electrophoresis and a computational molecular dynamics simulation indicated that iMyo01 forms a homodimer to generate a G-quadruplex. These results provide new insights into the aptamer truncation technology that preserves aptamer conformation and bioactivity for the development of efficient nucleic acid drugs.

肌原性寡脱氧核苷酸(myoDN)iSN04(5'-AGA TTA GGG TGA GGG TGA-3')是一种单链18碱基端粒DNA,可作为抗核蛋白适配体并诱导肌原性分化,有望成为预防疾病相关肌肉萎缩的核酸药物。为了提高药效并降低 myoDN 的合成成本,在保持其结构功能的同时缩短序列是一大挑战。iMyo01 和 iSN04 都能促进原代培养人肌母细胞肌管的形成,并上调肌生成基因的表达。iMyo01和iSN04都能与核仁蛋白相互作用,但iMyo01不能与稳定iSN04的异喹啉生物碱小檗碱结合。核磁共振显示,尽管 iMyo01 的序列很短,但它能形成 G 型四联结构。原生聚丙烯酰胺凝胶电泳和计算分子动力学模拟表明,iMyo01 形成同源二聚体,生成 G 型四联体。这些结果为保留灵媒构象和生物活性以开发高效核酸药物的灵媒截短技术提供了新的见解。
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引用次数: 0
Transcriptional and Metabolic Response of a Strain of Escherichia coli PTS− to a Perturbation of the Energetic Level by Modification of [ATP]/[ADP] Ratio 大肠杆菌 PTS- 菌株对改变[ATP]/[ADP]比例以扰乱能量水平的转录和代谢反应
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-04-10 DOI: 10.3390/biotech13020010
Sandra Soria, Ofelia E. Carreón-Rodríguez, R. de Anda, N. Flores, A. Escalante, Francisco Bolívar
The intracellular [ATP]/[ADP] ratio is crucial for Escherichia coli’s cellular functions, impacting transport, phosphorylation, signaling, and stress responses. Overexpression of F1-ATPase genes in E. coli increases glucose consumption, lowers energy levels, and triggers transcriptional responses in central carbon metabolism genes, particularly glycolytic ones, enhancing carbon flux. In this contribution, we report the impact of the perturbation of the energetic level in a PTS− mutant of E. coli by modifying the [ATP]/[ADP] ratio by uncoupling the cytoplasmic activity of the F1 subunit of the ATP synthase. The disruption of [ATP]/[ADP] ratio in the evolved strain of E. coli PB12 (PTS−) was achieved by the expression of the atpAGD operon encoding the soluble portion of ATP synthase F1-ATPase (strain PB12AGD+). The analysis of the physiological and metabolic response of the PTS− strain to the ATP disruption was determined using RT–qPCR of 96 genes involved in glucose and acetate transport, glycolysis and gluconeogenesis, pentose phosphate pathway (PPP), TCA cycle and glyoxylate shunt, several anaplerotic, respiratory chain, and fermentative pathways genes, sigma factors, and global regulators. The apt mutant exhibited reduced growth despite increased glucose transport due to decreased energy levels. It heightened stress response capabilities under glucose-induced energetic starvation, suggesting that the carbon flux from glycolysis is distributed toward the pentose phosphate and the Entner–Duodoroff pathway with the concomitant. Increase acetate transport, production, and utilization in response to the reduction in the [ATP]/[ADP] ratio. Upregulation of several genes encoding the TCA cycle and the glyoxylate shunt as several respiratory genes indicates increased respiratory capabilities, coupled possibly with increased availability of electron donor compounds from the TCA cycle, as this mutant increased respiratory capability by 240% more than in the PB12. The reduction in the intracellular concentration of cAMP in the atp mutant resulted in a reduced number of upregulated genes compared to PB12, suggesting that the mutant remains a robust genetic background despite the severe disruption in its energetic level.
细胞内[ATP]/[ADP]比率对大肠杆菌的细胞功能至关重要,影响着运输、磷酸化、信号传递和应激反应。在大肠杆菌中过表达 F1-ATP 酶基因会增加葡萄糖消耗,降低能量水平,并引发碳代谢中心基因(尤其是糖酵解基因)的转录反应,从而提高碳通量。在这篇论文中,我们报告了通过解除 ATP 合酶 F1 亚基细胞质活性的耦合,改变 [ATP] /[ADP] 比率,从而扰乱大肠杆菌 PTS- 突变体能量水平的影响。通过表达编码 ATP 合成酶 F1-ATP 酶可溶性部分的 atpAGD 操作子(菌株 PB12AGD+),大肠杆菌进化菌株 PB12(PTS-)的[ATP]/[ADP]比率被破坏。利用 RT-qPCR 对参与葡萄糖和乙酸盐转运、糖酵解和葡萄糖生成、磷酸戊糖途径 (PPP)、TCA 循环和乙醛酸分流的 96 个基因、几个无性繁殖、呼吸链和发酵途径基因、sigma 因子和全局调控因子进行了分析,确定了 PTS- 菌株对 ATP 干扰的生理和代谢反应。由于能量水平下降,尽管葡萄糖转运增加,但apt突变体却表现出生长减弱。在葡萄糖诱导的能量饥饿条件下,它的应激反应能力增强,这表明糖酵解产生的碳通量被分配到磷酸戊糖和 Entner-Duodoroff 途径,并伴随着。随着[ATP]/[ADP]比率的降低,乙酸盐的运输、产生和利用也随之增加。编码 TCA 循环和乙醛酸分流的几个基因以及几个呼吸基因的上调表明呼吸能力增强,同时可能还增加了 TCA 循环中电子供体化合物的可用性,因为该突变体的呼吸能力比 PB12 提高了 240%。与 PB12 相比,atp 突变体细胞内 cAMP 浓度的降低导致上调基因数量的减少,这表明尽管突变体的能量水平受到了严重破坏,但它仍然是一个稳健的遗传背景。
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引用次数: 0
Synthesis and Biological Activities of Some Metal Complexes of Peptides: A Review 一些肽金属配合物的合成与生物活性:综述
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-04-08 DOI: 10.3390/biotech13020009
P. Marinova, K. Tamahkyarova
Peptides, both natural and synthetic, are well suited for a wide range of purposes and offer versatile applications in different fields such as biocatalysts, injectable hydrogels, tumor treatment, and drug delivery. The research of the better part of the cited papers was conducted using various database platforms such as MetalPDB. The rising prominence of therapeutic peptides encompasses anticancer, antiviral, antimicrobial, and anti-neurodegenerative properties. The metals Na, K, Mg, Ca, Fe, Mn, Co, Cu, Zn, and Mo are ten of the twenty elements that are considered essential for life. Crucial for understanding the biological role of metals is the exploration of metal-bound proteins and peptides. Aside from essential metals, there are other non-essential metals that also interact biologically, exhibiting either therapeutic or toxic effects. Irregularities in metal binding contribute to diseases like Alzheimer’s, neurodegenerative disorders, Wilson’s, and Menkes disease. Certain metal complexes have potential applications as radiopharmaceuticals. The examination of these complexes was achieved by preforming UV–Vis, IR, EPR, NMR spectroscopy, and X-ray analysis. This summary, although unable to cover all of the studies in the field, offers a review of the ongoing experimentation and is a basis for new ideas, as well as strategies to explore and gain knowledge from the extensive realm of peptide-chelated metals and biotechnologies.
肽(包括天然肽和合成肽)用途广泛,在生物催化剂、可注射水凝胶、肿瘤治疗和药物输送等不同领域都有多方面的应用。大部分被引用论文的研究都是通过各种数据库平台(如 MetalPDB)进行的。治疗肽在抗癌、抗病毒、抗微生物和抗神经退行性病变等方面的作用日益突出。金属 Na、K、Mg、Ca、Fe、Mn、Co、Cu、Zn 和 Mo 是二十种生命必需元素中的十种。要了解金属的生物作用,关键在于探索与金属结合的蛋白质和肽。除必需金属外,其他非必需金属也会产生生物作用,表现出治疗或毒性效应。金属结合不正常会导致阿尔茨海默氏症、神经退行性疾病、威尔逊氏症和门克氏症等疾病。某些金属复合物有可能用作放射性药物。对这些复合物的研究是通过紫外可见光谱、红外光谱、EPR、核磁共振光谱和 X 射线分析实现的。本摘要虽然不能涵盖该领域的所有研究,但提供了对正在进行的实验的回顾,是新想法的基础,也是探索肽螯合金属和生物技术的广泛领域并从中获得知识的策略。
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引用次数: 0
Novel Pseudomonas Species Prevent the Growth of the Phytopathogenic Fungus Aspergillus flavus 新型假单胞菌阻止植物病原真菌黄曲霉的生长
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-03-30 DOI: 10.3390/biotech13020008
Franciene Rabico, T. C. Borelli, R. Alnoch, M. Polizeli, Ricardo da Silva, Rafael Silva-Rocha, M. Guazzaroni
In response to the escalating demand for sustainable agricultural methodologies, the utilization of microbial volatile organic compounds (VOCs) as antagonists against phytopathogens has emerged as a viable eco-friendly alternative. Microbial volatiles exhibit rapid diffusion rates, facilitating prompt chemical interactions. Moreover, microorganisms possess the capacity to emit volatiles constitutively, as well as in response to biological interactions and environmental stimuli. In addition to volatile compounds, these bacteria demonstrate the ability to produce soluble metabolites with antifungal properties, such as APE Vf, pyoverdin, and fragin. In this study, we identified two Pseudomonas strains (BJa3 and MCal1) capable of inhibiting the in vitro mycelial growth of the phytopathogenic fungus Aspergillus flavus, which serves as the causal agent of diseases in sugarcane and maize. Utilizing GC/MS analysis, we detected 47 distinct VOCs which were produced by these bacterial strains. Notably, certain volatile compounds, including 1-heptoxydecane and tridecan-2-one, emerged as primary candidates for inhibiting fungal growth. These compounds belong to essential chemical classes previously documented for their antifungal activity, while others represent novel molecules. Furthermore, examination via confocal microscopy unveiled significant morphological alterations, particularly in the cell wall, of mycelia exposed to VOCs emitted by both Pseudomonas species. These findings underscore the potential of the identified BJa3 and MCal1 Pseudomonas strains as promising agents for fungal biocontrol in agricultural crops.
为满足对可持续农业方法不断增长的需求,利用微生物挥发性有机化合物(VOC)作为植物病原体的拮抗剂已成为一种可行的生态友好型替代方法。微生物挥发性有机化合物扩散速度快,有利于迅速发生化学作用。此外,微生物有能力持续释放挥发性物质,并对生物相互作用和环境刺激做出反应。除挥发性化合物外,这些细菌还能产生具有抗真菌特性的可溶性代谢物,如 APE Vf、pyoverdin 和 fragin。在这项研究中,我们发现两株假单胞菌(BJa3 和 MCal1)能够抑制植物病原真菌黄曲霉的体外菌丝生长,黄曲霉是甘蔗和玉米病害的病原菌。通过气相色谱/质谱分析,我们检测到了这些细菌菌株产生的 47 种不同的挥发性有机化合物。值得注意的是,包括 1-heptoxydecane 和 tridecan-2-one 在内的某些挥发性化合物成为抑制真菌生长的主要候选物质。这些化合物属于以前记录的具有抗真菌活性的基本化学类别,而其他化合物则是新分子。此外,通过共聚焦显微镜检查发现,暴露于这两种假单胞菌释放的挥发性有机化合物的菌丝发生了显著的形态变化,尤其是细胞壁。这些发现强调了已鉴定的 BJa3 和 MCal1 假单胞菌菌株作为农作物真菌生物防治剂的潜力。
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