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Privacy Implications of Contacting the At-Risk Relatives of Patients with Medically Actionable Genetic Predisposition, with Patient Consent: A Hypothetical Australian Case Study. 在患者同意的情况下,接触具有医学上可操作的遗传易感性的患者的高危亲属的隐私含义:一个假设的澳大利亚案例研究。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-06-02 DOI: 10.3390/biotech12020045
Jane Tiller, Kristen Nowak, Tiffany Boughtwood, Margaret Otlowski

Genetic risk information has relevance for patients' blood relatives. However, cascade testing uptake in at-risk families is <50%. International research supports direct notification of at-risk relatives by health professionals (HPs), with patient consent. However, HPs express concerns about the privacy implications of this practice. Our privacy analysis, grounded in a clinically relevant hypothetical scenario, considers the types of personal information involved in direct notification of at-risk relatives and the application of Australian privacy regulations. It finds that collecting relatives' contact details, and using those details (with patient consent) to notify relatives of possible genetic risk, does not breach Australian privacy law, providing that HPs adhere to regulatory requirements. It finds the purported "right to know" does not prevent disclosure of genetic information to at-risk relatives. Finally, the analysis confirms that the discretion available to HPs does not equate to a positive duty to warn at-risk relatives. Thus, direct notification of a patient's at-risk relatives regarding medically actionable genetic information, with patient consent, is not a breach of Australian privacy regulations, providing it is conducted in accordance with the applicable principles set out. Clinical services should consider offering this service to patients where appropriate. National guidelines would assist with the clarification of the discretion for HPs.

遗传风险信息与患者血亲有相关性。然而,在高危家庭中,级联测试的吸收是
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引用次数: 1
Influence of Growth Medium Composition on Physiological Responses of Escherichia coli to the Action of Chloramphenicol and Ciprofloxacin. 培养基组成对大肠杆菌对氯霉素和环丙沙星作用生理反应的影响。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-06-01 DOI: 10.3390/biotech12020043
Galina Smirnova, Aleksey Tyulenev, Nadezda Muzyka, Vadim Ushakov, Zoya Samoilova, Oleg Oktyabrsky

The ability of hydrogen sulfide (H2S) to protect bacteria from bactericidal antibiotics has previously been described. The main source of H2S is the desulfurization of cysteine, which is either synthesized by cells from sulfate or transported from the medium, depending on its composition. Applying electrochemical sensors and a complex of biochemical and microbiological methods, changes in growth, respiration, membrane potential, SOS response, H2S production and bacterial survival under the action of bactericidal ciprofloxacin and bacteriostatic chloramphenicol in commonly used media were studied. Chloramphenicol caused a sharp inhibition of metabolism in all studied media. The physiological response of bacteria to ciprofloxacin strongly depended on its dose. In rich LB medium, cells retained metabolic activity at higher concentrations of ciprofloxacin than in minimal M9 medium. This decreased number of surviving cells (CFU) by 2-3 orders of magnitude in LB compared to M9 medium, and shifted optimal bactericidal concentration (OBC) from 0.3 µg/mL in M9 to 3 µg/mL in LB. Both drugs induced transient production of H2S in M9 medium. In media containing cystine, H2S was produced independently of antibiotics. Thus, medium composition significantly modifies physiological response of E. coli to bactericidal antibiotic, which should be taken into account when interpreting data and developing drugs.

硫化氢(H2S)保护细菌免受杀菌抗生素侵害的能力先前已被描述过。H2S的主要来源是半胱氨酸的脱硫作用,根据其组成,半胱氨酸可以由细胞从硫酸盐中合成,也可以从培养基中运输。采用电化学传感器和生化、微生物等综合方法,研究了在杀菌剂环丙沙星和抑菌剂氯霉素的作用下,常用培养基中细菌生长、呼吸、膜电位、SOS响应、H2S生成和细菌存活的变化。氯霉素对所有培养基的代谢均有明显的抑制作用。细菌对环丙沙星的生理反应与剂量密切相关。在富含LB的培养基中,细胞在较高浓度的环丙沙星下保持代谢活性,而在最低浓度的M9培养基中。与M9培养基相比,LB中的存活细胞数(CFU)减少了2-3个数量级,并将最佳杀菌浓度(OBC)从M9中的0.3 μ g/mL转移到LB中的3 μ g/mL。两种药物均诱导M9培养基中瞬时产生H2S。在含有胱氨酸的培养基中,H2S的产生独立于抗生素。因此,培养基成分显著改变了大肠杆菌对抗菌抗生素的生理反应,在解释数据和开发药物时应考虑到这一点。
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引用次数: 2
DNA Data Storage. DNA数据存储。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-06-01 DOI: 10.3390/biotech12020044
Tomasz Buko, Nella Tuczko, Takao Ishikawa

The demand for data storage is growing at an unprecedented rate, and current methods are not sufficient to accommodate such rapid growth due to their cost, space requirements, and energy consumption. Therefore, there is a need for a new, long-lasting data storage medium with high capacity, high data density, and high durability against extreme conditions. DNA is one of the most promising next-generation data carriers, with a storage density of 10¹⁹ bits of data per cubic centimeter, and its three-dimensional structure makes it about eight orders of magnitude denser than other storage media. DNA amplification during PCR or replication during cell proliferation enables the quick and inexpensive copying of vast amounts of data. In addition, DNA can possibly endure millions of years if stored in optimal conditions and dehydrated, making it useful for data storage. Numerous space experiments on microorganisms have also proven their extraordinary durability in extreme conditions, which suggests that DNA could be a durable storage medium for data. Despite some remaining challenges, such as the need to refine methods for the fast and error-free synthesis of oligonucleotides, DNA is a promising candidate for future data storage.

对数据存储的需求正以前所未有的速度增长,而目前的方法由于其成本、空间要求和能源消耗而不足以适应这种快速增长。因此,需要一种新的、持久的数据存储介质,它具有高容量、高数据密度和在极端条件下的高耐久性。DNA是最有前途的下一代数据载体之一,其存储密度为每立方厘米10¹⁹位数据,其三维结构使其密度比其他存储介质高约8个数量级。PCR过程中的DNA扩增或细胞增殖过程中的复制使大量数据的快速和廉价复制成为可能。此外,如果储存在最佳条件下并脱水,DNA可能会保存数百万年,这使得它对数据存储很有用。许多关于微生物的太空实验也证明了它们在极端条件下的非凡耐久性,这表明DNA可能是一种持久的数据存储介质。尽管仍然存在一些挑战,例如需要改进快速和无差错合成寡核苷酸的方法,但DNA是未来数据存储的有希望的候选者。
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引用次数: 0
Application of Chlorella vulgaris Beijerinck as a Biostimulant for Growing Cucumber Seedlings in Hydroponics. 小球藻在水培黄瓜幼苗生长中的应用。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-05-22 DOI: 10.3390/biotech12020042
Galiya I Vildanova, Rezeda Z Allaguvatova, Dina F Kunsbaeva, Natalia V Sukhanova, Lira A Gaysina

Hydroponics is a promising method for growing agricultural plants and is especially relevant in the context of global climate change. Microscopic algae, including Chlorella vulgaris, has great potential for use in hydroponic systems as natural growth stimulators. The effect of the suspension of an authentic strain of Chlorella vulgaris Beijerinck on the length of cucumber shoots and roots, as well as its dry biomass, was studied. During cultivation in a Knop medium with the addition of Chlorella suspension, the length of the shoots was shortened from 11.30 to 8.15 cm, while the length of the roots also decreased from 16.41 to 10.59 cm. At the same time, the biomass of the roots increased from 0.04 to 0.05 g. The data obtained indicate the positive effect of the suspension of the Chlorella vulgaris authentic strain on the dry biomass of cucumber plants in hydroponic conditions and make it possible to recommend this strain for use when growing plants in hydroponic systems.

水培法是一种很有前途的种植农业植物的方法,在全球气候变化的背景下尤其重要。微型藻类,包括小球藻,在水培系统中作为天然生长刺激剂具有很大的潜力。研究了一株普通小球藻(Chlorella vulgaris Beijerinck)菌株悬浮液对黄瓜茎、根长度及其干生物量的影响。在添加小球藻悬浮液的Knop培养基中培养时,茎长由11.30 cm缩短至8.15 cm,根长由16.41 cm缩短至10.59 cm。与此同时,根系生物量从0.04 g增加到0.05 g。结果表明,普通小球藻菌株悬浮液对水培条件下黄瓜植株干生物量有积极影响,为推荐该菌株在水培系统中种植植物提供了可能。
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引用次数: 0
Trends in Biological Ammonia Production. 生物氨生产的趋势。
IF 2.7 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-05-19 DOI: 10.3390/biotech12020041
Adewale Adeniyi, Ibrahim Bello, Taofeek Mukaila, Niloy Chandra Sarker, Ademola Hammed

Food production heavily depends on ammonia-containing fertilizers to improve crop yield and profitability. However, ammonia production is challenged by huge energy demands and the release of ~2% of global CO2. To mitigate this challenge, many research efforts have been made to develop bioprocessing technologies to make biological ammonia. This review presents three different biological approaches that drive the biochemical mechanisms to convert nitrogen gas, bioresources, or waste to bio-ammonia. The use of advanced technologies-enzyme immobilization and microbial bioengineering-enhanced bio-ammonia production. This review also highlighted some challenges and research gaps that require researchers' attention for bio-ammonia to be industrially pragmatic.

粮食生产严重依赖含氨肥料来提高作物产量和利润。然而,氨生产面临着巨大的能源需求和释放全球约 2% 的二氧化碳的挑战。为缓解这一挑战,许多研究人员努力开发生物加工技术来制造生物氨。本综述介绍了三种不同的生物方法,它们通过生物化学机制将氮气、生物资源或废物转化为生物氨。先进技术--酶固定化和微生物生物工程--的使用提高了生物氨的生产。本综述还强调了一些挑战和研究空白,需要研究人员加以关注,以实现生物氨的工业实用性。
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引用次数: 0
Mass Cultivation of Microalgae: II. A Large Species Pulsing Blue Light Concept. 微藻的大规模培养:2。大物种脉冲蓝光概念。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-05-17 DOI: 10.3390/biotech12020040
Hans Chr Eilertsen, Jo Strømholt, John-Steinar Bergum, Gunilla Kristina Eriksen, Richard Ingebrigtsen

If mass cultivation of photoautotrophic microalgae is to gain momentum and find its place in the new "green future", exceptional optimizations to reduce production costs must be implemented. Issues related to illumination should therefore constitute the main focus, since it is the availability of photons in time and space that drives synthesis of biomass. Further, artificial illumination (e.g., LEDs) is needed to transport enough photons into dense algae cultures contained in large photobioreactors. In the present research project, we employed short-term O2 production and 7-day batch cultivation experiments to evaluate the potential to reduce illumination light energy by applying blue flashing light to cultures of large and small diatoms. Our results show that large diatom cells allow more light penetration for growth compared to smaller cells. PAR (400-700 nm) scans yielded twice as much biovolume-specific absorbance for small biovolume (avg. 7070 μm3) than for large biovolume (avg. 18,703 μm3) cells. The dry weight (DW) to biovolume ratio was 17% lower for large than small cells, resulting in a DW specific absorbance that was 1.75 times higher for small cells compared to large cells. Blue 100 Hz square flashing light yielded the same biovolume production as blue linear light in both the O2 production and batch experiments at the same maximum light intensities. We therefore suggest that, in the future, more focus should be placed on researching optical issues in photobioreactors, and that cell size and flashing blue light should be central in this.

如果要大规模种植光自养微藻,并在新的“绿色未来”中找到自己的位置,就必须实施特殊的优化措施,以降低生产成本。因此,与照明有关的问题应成为主要焦点,因为驱动生物质合成的是光子在时间和空间上的可用性。此外,需要人工照明(例如,led)将足够的光子传输到大型光生物反应器中包含的密集藻类培养物中。在本研究项目中,我们通过短期产氧和7天的批量培养实验,评估了在大硅藻和小硅藻培养物上施加蓝光降低照明光能的潜力。我们的研究结果表明,与较小的硅藻细胞相比,较大的硅藻细胞允许更多的光穿透生长。PAR (400-700 nm)扫描对小生物体积(平均7070 μm3)细胞的生物体积特异性吸光度是大生物体积(平均18703 μm3)细胞的两倍。大细胞的干重(DW)与生物体积比比比小细胞低17%,导致小细胞的DW比吸光度比大细胞高1.75倍。在相同的最大光强下,蓝色100 Hz方形闪烁光在O2生产和批量实验中产生的生物体积与蓝色线性光相同。因此,我们建议,在未来,应该更多地关注于光生物反应器的光学问题的研究,而细胞的大小和闪烁的蓝光应该是这方面的核心。
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引用次数: 0
Metabolites Potentially Determine the High Antioxidant Properties of Limosilactobacillus fermentum U-21. 发酵乳酸杆菌U-21的代谢物可能决定其高抗氧化性能。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-05-17 DOI: 10.3390/biotech12020039
Yelena V Grishina, Aleksey A Vatlin, Dilara A Mavletova, Maya V Odorskaya, Alexey M Senkovenko, Rustem A Ilyasov, Valeriy N Danilenko

Many kinds of Lactobacillus are common occupants of humans' digestive tract that support the preservation of a balanced microbial environment that benefits host health. In this study, the unique lactic acid bacterium strain Limosilactobacillus fermentum U-21, which was isolated from the feces of a healthy human, was examined for its metabolite profile in order to compare it to that of the strain L. fermentum 279, which does not have antioxidant (AO) capabilities. By using GC × GC-MS, the metabolite fingerprint of each strain was identified, and the data were then subjected to multivariate bioinformatics analysis. The L. fermentum U-21 strain has previously been shown to possess distinctive antioxidant properties in in vivo and in vitro studies, positioning it as a drug candidate for the treatment of Parkinsonism. The production of multiple distinct compounds is shown by the metabolite analysis, demonstrating the unique characteristics of the L. fermentum U-21 strain. According to reports, some of the L. fermentum U-21 metabolites found in this study have health-promoting properties. The GC × GC-MS-based metabolomic tests defined strain L. fermentum U-21 as a potential postbiotic with significant antioxidant potential.

许多种类的乳酸菌是人类消化道的共同居住者,支持维持平衡的微生物环境,有利于宿主健康。本研究对从健康人粪便中分离出的独特乳酸菌发酵乳杆菌U-21进行了代谢谱分析,并与不具有抗氧化能力的菌株发酵乳杆菌279进行了比较。采用GC- x GC- ms鉴定各菌株代谢物指纹图谱,并对数据进行多元生物信息学分析。在体内和体外研究中,发酵乳杆菌U-21菌株已被证明具有独特的抗氧化特性,将其定位为治疗帕金森病的候选药物。代谢产物分析表明,发酵L. fermentum U-21菌株产生多种不同的化合物,证明了该菌株的独特特性。据报道,本研究中发现的一些发酵乳杆菌U-21代谢物具有促进健康的特性。基于GC × GC- ms的代谢组学试验确定菌株发酵乳杆菌U-21是一种具有显著抗氧化潜力的潜在后生物。
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引用次数: 0
Recent Developments in Protein Lactylation in PTSD and CVD: Novel Strategies and Targets. 创伤后应激障碍和心血管疾病中蛋白质乳化的最新进展:新策略和目标。
IF 2.7 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-05-15 DOI: 10.3390/biotech12020038
Zisis Kozlakidis, Patricia Shi, Ganna Abarbanel, Carolina Klein, Adonis Sfera

In 1938, Corneille Heymans received the Nobel Prize in physiology for discovering that oxygen sensing in the aortic arch and carotid sinus was mediated by the nervous system. The genetics of this process remained unclear until 1991 when Gregg Semenza while studying erythropoietin, came upon hypoxia-inducible factor 1, for which he obtained the Nobel Prize in 2019. The same year, Yingming Zhao found protein lactylation, a posttranslational modification that can alter the function of hypoxia-inducible factor 1, the master regulator of cellular senescence, a pathology implicated in both post-traumatic stress disorder (PTSD) and cardiovascular disease (CVD). The genetic correlation between PTSD and CVD has been demonstrated by many studies, of which the most recent one utilizes large-scale genetics to estimate the risk factors for these conditions. This study focuses on the role of hypertension and dysfunctional interleukin 7 in PTSD and CVD, the former caused by stress-induced sympathetic arousal and elevated angiotensin II, while the latter links stress to premature endothelial cell senescence and early vascular aging. This review summarizes the recent developments and highlights several novel PTSD and CVD pharmacological targets. They include lactylation of histone and non-histone proteins, along with the related biomolecular actors such as hypoxia-inducible factor 1α, erythropoietin, acid-sensing ion channels, basigin, and Interleukin 7, as well as strategies to delay premature cellular senescence by telomere lengthening and resetting the epigenetic clock.

1938 年,科尔内耶-海曼斯(Corneille Heymans)因发现主动脉弓和颈动脉窦的氧感应由神经系统介导而获得诺贝尔生理学奖。直到 1991 年,格雷格-塞姆扎(Gregg Semenza)在研究促红细胞生成素时发现了缺氧诱导因子 1,并因此获得 2019 年诺贝尔奖,但这一过程的遗传学原理仍不清楚。同年,赵英明发现了蛋白质乳化,这种翻译后修饰可以改变缺氧诱导因子1的功能,而缺氧诱导因子1是细胞衰老的主调节因子,这种病理现象与创伤后应激障碍(PTSD)和心血管疾病(CVD)都有关联。创伤后应激障碍和心血管疾病之间的遗传相关性已被许多研究证实,其中最新的一项研究利用大规模遗传学来估算这些疾病的风险因素。本研究重点关注高血压和白细胞介素 7 功能紊乱在创伤后应激障碍和心血管疾病中的作用,前者是由应激引起的交感神经兴奋和血管紧张素 II 升高造成的,而后者则与应激导致的内皮细胞过早衰老和血管早期老化有关。本综述总结了近期的研究进展,并重点介绍了创伤后应激障碍和心血管疾病的几种新型药理靶点。这些靶点包括组蛋白和非组蛋白的乳化,以及相关的生物分子行为体,如缺氧诱导因子1α、促红细胞生成素、酸感应离子通道、碱性蛋白和白细胞介素7,以及通过延长端粒和重置表观遗传时钟来延缓细胞过早衰老的策略。
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引用次数: 0
Development of the Follow-Up Human 3D Oral Cancer Model in Cancer Treatment. 开发用于癌症治疗的后续人类三维口腔癌模型。
IF 2.7 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-05-11 DOI: 10.3390/biotech12020035
Kazuyo Igawa, Kenji Izumi, Yoshinori Sakurai

As function preservation cancer therapy, targeted radiation therapies have been developed for the quality of life of cancer patients. However, preclinical animal studies evaluating the safety and efficacy of targeted radiation therapy is challenging from the viewpoints of animal welfare and animal protection, as well as the management of animal in radiation-controlled areas under the regulations. We fabricated the human 3D oral cancer model that considers the time axis of the follow up in cancer treatment. Therefore, in this study, the 3D model with human oral cancer cells and normal oral fibroblasts was treated based on clinical protocol. After cancer treatment, the histological findings of the 3D oral cancer model indicated the clinical correlation between tumor response and surrounding normal tissue. This 3D model has potential as a tool for preclinical studies alternative to animal studies.

作为癌症治疗的功能保存手段,靶向放射治疗已被开发出来,以提高癌症患者的生活质量。然而,从动物福利和动物保护的角度来看,评估靶向放射治疗的安全性和有效性的临床前动物研究,以及根据法规在辐射控制区对动物的管理都具有挑战性。我们制作的人体三维口腔癌模型考虑到了癌症治疗随访的时间轴。因此,在本研究中,我们根据临床方案对含有人类口腔癌细胞和正常口腔成纤维细胞的三维模型进行了治疗。癌症治疗后,三维口腔癌模型的组织学结果表明,肿瘤反应与周围正常组织之间存在临床相关性。这种三维模型具有替代动物实验的临床前研究工具的潜力。
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引用次数: 0
Recent Genome-Editing Approaches toward Post-Implanted Fetuses in Mice. 小鼠植入后胚胎的基因组编辑新方法
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-05-11 DOI: 10.3390/biotech12020037
Shingo Nakamura, Emi Inada, Issei Saitoh, Masahiro Sato

Genome editing, as exemplified by the CRISPR/Cas9 system, has recently been employed to effectively generate genetically modified animals and cells for the purpose of gene function analysis and disease model creation. There are at least four ways to induce genome editing in individuals: the first is to perform genome editing at the early preimplantation stage, such as fertilized eggs (zygotes), for the creation of whole genetically modified animals; the second is at post-implanted stages, as exemplified by the mid-gestational stages (E9 to E15), for targeting specific cell populations through in utero injection of viral vectors carrying genome-editing components or that of nonviral vectors carrying genome-editing components and subsequent in utero electroporation; the third is at the mid-gestational stages, as exemplified by tail-vein injection of genome-editing components into the pregnant females through which the genome-editing components can be transmitted to fetal cells via a placenta-blood barrier; and the last is at the newborn or adult stage, as exemplified by facial or tail-vein injection of genome-editing components. Here, we focus on the second and third approaches and will review the latest techniques for various methods concerning gene editing in developing fetuses.

以CRISPR/Cas9系统为例,基因组编辑最近被用于有效地产生转基因动物和细胞,用于基因功能分析和疾病模型创建。至少有四种方法可以诱导个体进行基因组编辑:第一种是在胚胎植入前的早期阶段,如受精卵(受精卵)进行基因组编辑,以创造完整的转基因动物;第二种是在植入后阶段,例如妊娠中期(E9至E15),通过在子宫内注射携带基因组编辑成分的病毒载体或携带基因组编辑成分的非病毒载体并随后在子宫内电穿孔来靶向特定细胞群;第三种是在妊娠中期,如尾静脉将基因组编辑成分注射到怀孕的雌性,基因组编辑成分可以通过胎盘-血液屏障传播到胎儿细胞;最后是在新生儿或成人阶段,如面部或尾静脉注射基因组编辑成分。在这里,我们将重点介绍第二种和第三种方法,并将回顾有关发育中胎儿基因编辑的各种方法的最新技术。
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引用次数: 1
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