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Antiviral Effect of Extracellular Matrix Protein ABI3BP on Vesicular Stomatitis Virus and Its Mechanism: A Preliminary Study In Vitro 细胞外基质蛋白 ABI3BP 对水泡性口炎病毒的抗病毒作用及其机制:体外初步研究
Q2 Medicine Pub Date : 2024-04-01 DOI: 10.24920/004319
Xiang-Bo Meng , Mei-Hua Chen , Nuo Xu , Tian-Qi Li , Shuai-Chen Li , Sun-Xin Zhou , Huan Chen , Tong Zhang

Objective

To explore the influence of extracellular matrix protein ABI-interactor 3-binding protein (ABI3BP) on vesicular stomatitis virus (VSV) genome replication and innate immune signaling pathway.

Methods

The small interfering RNA (siRNA) was transfected to knock down ABI3BP gene in human skin fibroblast BJ-Sta cells. VSV-green fluorescent protein (VSV-GFP)-infected cell model was established. The morphological changes and F-actin stress fiber formation were detected on ABI3BP knockdown cells by phalloidin immunofluorescence staining. The mRNA level of virus replication was detected by RT-qPCR in BJ-Sta cells after VSV-GFP infection; western blotting was performed to detect the changes in interferon regulatory factor 3 (IRF3) and TANK-binding kinase 1 (TBK1) phosphorylation levels.

Results

The VSV-GFP-infected BJ-Sta cell model was successfully established. Efficient knockdown of ABI3BP in BJ-Sta cells was achieved. Phalloidin immunofluorescence staining revealed structural rearrangement of intracellular F-actin after ABI3BP gene knockdown. Compared with the control group, the gene copy number of VSV-GFP in ABI3BP knockdown cells increased by 2.2 – 3.5 times (P<0.01) and 2.2 – 4.0 times (P<0.01) respectively when infected with VSV of multiplicity of infection 0.1 and 1. The expression of viral protein significantly increased in ABI3BP knockdown cells after virus infection. The activation of type-I interferon pathway, as determined by phosphorylated IRF3 and phosphorylated TBK1, was significantly decreased in ABI3BP knockdown cells after VSV-GFP infection.

Conclusions

Extracellular matrix protein ABI3BP plays an important role in maintaining the formation and rearrangement of actin structure. ABI3BP gene deletion promotes RNA virus replication, and ABI3BP is an important molecule that maintains the integrity of type I interferon pathway.

目的 探讨细胞外基质蛋白 ABI3BP 对水泡性口炎病毒(VSV)基因组复制和先天性免疫信号通路的影响。方法 转染小干扰 RNA(siRNA)敲除人皮肤成纤维细胞 BJ-5ta 的 ABI3BP 基因。建立 VSV 绿色荧光蛋白(VSV-GFP)感染细胞模型。用类黄嘌呤免疫荧光染色法检测了ABI3BP基因敲除细胞的形态学变化和F-肌动蛋白应力纤维的形成。用 RT-qPCR 检测 VSV-GFP 感染 BJ-5ta 细胞后病毒复制的 mRNA 水平;用 Western 印迹检测干扰素调节因子 3(IRF3)和 TANK 结合激酶 1(TBK1)磷酸化水平的变化。结果 成功建立了 VSV-GFP 感染 BJ-5ta 细胞模型。在 BJ-5ta 细胞上实现了 ABI3BP 的有效敲除。法勒素免疫荧光染色显示,ABI3BP 基因敲除后细胞内 F-actin 发生了结构重排。与对照组相比,ABI3BP 基因敲除细胞中 VSV-GFP 的基因拷贝数增加了 2.2 - 3.5 倍(PConclusion 细胞外基质蛋白 ABI3BP 在维持肌动蛋白结构的形成和重排中起着重要作用。ABI3BP 基因缺失会促进 RNA 病毒的复制,ABI3BP 是维持 I 型干扰素通路完整性的重要分子。
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引用次数: 0
Atopic Dermatitis Associated Retinal Detachment and Retinal Vasculitis: A Case Report. 特应性皮炎相关视网膜脱离和视网膜血管炎:病例报告。
Q2 Medicine Pub Date : 2024-03-01 DOI: 10.24920/004321
Shi-Yu Cheng, Zao-Wen Wang, Rong-Ping Dai

Atopic dermatitis is usually associated with various ocular complications. We report a 21-year-old Chinese male who presented to our ophthalmology clinic with bilateral retinal detachment and cataracts. The patient had a clear medical history of atopic dermatitis, which had been diagnosed eight years earlier and had been treated with loratadine and pimecrolimus. Cataract surgery was performed for both eyes, combined with scleral buckling for the right eye and pars plana vitrectomy for the left eye. During postoperative follow-up, fundus fluorescein angiography showed retinal vasculitis in both eyes and macular edema in the left eye, which coincided with an exacerbation of atopic dermatitis. Macular edema improved after four months of regular dupilumab treatment in the dermatology department. The ocular condition remained stable three years postoperatively.

特应性皮炎通常伴有各种眼部并发症。我们报告了一名 21 岁的中国男性患者,他因双侧视网膜脱落和白内障来我院眼科就诊。患者有明确的特应性皮炎病史,8 年前确诊为特应性皮炎,曾接受氯雷他定和吡美莫司治疗。患者的双眼都接受了白内障手术,右眼接受了巩膜扣锁术,左眼接受了玻璃体旁切除术。术后随访期间,眼底荧光素血管造影显示双眼均出现视网膜血管炎,左眼出现黄斑水肿,同时特应性皮炎加重。在皮肤科接受了四个月的杜比鲁单抗常规治疗后,黄斑水肿得到了改善。术后三年,眼部情况一直保持稳定。
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引用次数: 0
Application of Tranexamic Acid in Shoulder Arthroscopic Surgery: A Randomised Controlled Trial. 氨甲环酸在肩关节镜手术中的应用:随机对照试验
Q2 Medicine Pub Date : 2023-12-01 DOI: 10.24920/004295
Tian-Ci Wang, Jia-Liang Guo, Qiu-Ping Tian, He-Ping Deng, Bing Yin, Zeng Xiao, Bo Lu

Objective To explore the optimal administration route of tranexamic acid (TXA) in shoulder arthroscopic surgery. Methods Patients undergoing arthroscopic rotator cuff repair were randomly divided into four groups: control group (without TXA treatment), intravenous group (TXA was intravenously administered 10 minutes before surgery), irrigation group (TXA was added to the irrigation fluid during subacromial decompression and acromioplasty), and intravenous plus irrigation group (TXA was applied both intravenously and via intra-articular irrigation). The primary outcome was visual clarity assessed with visual analog scale (VAS) score, and the secondary outcomes included irrigation fluid consumption and time to subacromial decompression and acromioplasty procedure. Results There were 134 patients enrolled in the study, including 33 in the control group, 35 in the intravenous group, 32 in the irrigation group, and 34 in the intravenous plus irrigation group. The median and interquartile range of VAS scores for the intravenous, irrigation, and intravenous plus irrigation groups were 2.70 (2.50, 2.86) (Z = -3.677, P = 0.002), 2.67 (2.50, 2.77) (Z = -3.058, P < 0.001), and 2.91 (2.75, 3.00) (Z = -6.634, P < 0.001), respectively, significantly higher than that of the control group [2.44 (2.37, 2.53)]. Moreover, the control group consumed more irrigation fluid than the intravenous group, irrigation group, and intravenous plus irrigation group (all P < 0.05). The intravenous plus irrigation group consumed less irrigation fluid than either the intravenous group or the irrigation group (both P < 0.001). There was no difference in subacromial decompression and acromioplasty operative time among the four groups. Conclusion TXA applied both topically and systematically can improve intraoperative visual clarity, and the combined application is more effective.

目的 探讨氨甲环酸在关节镜手术中的最佳给药途径。方法 将接受关节镜肩袖修复术的患者随机分为 4 组:对照组(无氨甲环酸治疗)、静脉注射组(术前 10 分钟静脉注射氨甲环酸)、灌注组(在肩峰下减压和肩峰成形术中将氨甲环酸加入灌注液中)和静脉注射加灌注组(同时静脉注射和通过关节内灌注氨甲环酸)。主要结果是以视觉模拟量表(VAS)评分评估视觉清晰度,次要结果包括冲洗液消耗量和肩峰下减压及肩峰成形术的时间。结果 最终分析包括 134 名患者,其中对照组 33 人,静脉组 35 人,灌注组 32 人,静脉和灌注组 34 人。静脉注射组、灌注组和静脉注射加灌注组的 VAS 评分分别为 2.70(2.50,2.86)(Z = -3.677,P = 0.001)、2.67(2.50,2.77)(Z = -3。058, P < 0.001)和 2.91 (2.75, 3.00) (Z = -6.634, P < 0.001),分别显著高于对照组[2.44 (2.37, 2.53)]。此外,对照组比静脉注射组、冲洗组和静脉注射加冲洗组消耗更多的冲洗液(均 P < 0.05)。静脉注射加冲洗组比静脉注射组或冲洗组消耗的冲洗液少(均为 P <0.001)。所有 4 组在肩峰下减压和肩峰成形术的手术时间上没有差异。结论 局部和系统应用 TXA 可改善术中视觉清晰度,联合应用效果更佳。
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引用次数: 0
SpyGlass in Diagnosis of Hepatocellular Carcinoma with Right Hepatic Duct Tumor Thrombus Hemorrhage: A Case Report. SpyGlass 在诊断伴有右肝导管肿瘤血栓出血的肝细胞癌中的应用:病例报告。
Q2 Medicine Pub Date : 2023-12-01 DOI: 10.24920/004273
Li-Hua Guo, Min Miao, Guo-Liang Ye

Hepatocelluar carcinoma presenting as a biliary duct tumor thrombus is a relatively rare entity, with poor prognosis. The primary clinical manifestation of this disease is obstructive jaundice, which can often be misdiagnosed. A 59-year-old female patient was admitted with sudden onset of abdominal pain. Laboratory tests suggested obstructive jaundice, and enhanced magnetic resonance imaging of the upper abdomen did not show obvious biliary dilatation. Endoscopic ultrasound and endoscopic retrograde cholangiopancreatography suggested an occupying lesion in the upper bile duct. SpyGlass and biopsy finally confirmed hepatocellular carcinoma with right hepatic duct tumor thrombus hemorrhage. The SpyGlass Direct Visualization System, as an advanced biliary cholangioscopy device, showed the advantages of single-person operation as well as easy access to and visualization of the lesion.

肝细胞癌表现为胆管肿瘤血栓是一种相对罕见的疾病,预后较差。这种疾病的主要临床表现是阻塞性黄疸,但经常会被误诊。一名 59 岁的女性患者因突发腹痛入院。实验室检查提示梗阻性黄疸,上腹部增强磁共振成像未显示明显的胆道扩张。内镜超声和内镜逆行胰胆管造影显示胆管上段有占位性病变,但性质不明。SpyGlass 和活检最终确诊为肝细胞癌,伴有右肝管肿瘤血栓出血。SpyGlass 直接可视系统作为一种先进的胆道胆道镜设备,具有单人操作、易于接近和观察病变的优点。
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引用次数: 0
Iridociliary Body Metastasis of Atypical Carcinoid: Case Management with Intravitreal Anti-Vascular Endothelial Growth Factor Injections. 非典型类癌虹膜体转移:玻璃体内注射抗血管内皮生长因子的病例处理。
Q2 Medicine Pub Date : 2023-12-01 DOI: 10.24920/004268
Yang Zhang, Ai-Ling Bian, Rong-Ping Dai

We report a rare case involving a 52-year-old female diagnosed with an atypical bronchial carcinoid tumor with metastases to the mediastinum, hilar lymph nodes, breast, and pancreas. In additional, the patient had metastases to the iris and ciliary body, resulting in progressive vision loss in her left eye. Treatment was successful by intravitreal injections of anti-vascular endothelial growth factor.

我们报告了一例罕见的病例,涉及一名52岁的女性,被诊断为非典型支气管类癌,并伴有纵隔、肺门淋巴结、乳腺和胰腺的转移。此外,患者经历了虹膜和睫状体的转移,导致左眼进行性视力丧失。玻璃体内注射抗血管内皮生长因子治疗成功。
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引用次数: 0
Influence of Gut Microbiota and its Metabolites on Progression of Metabolic Associated Fatty Liver Disease. 肠道微生物群及其代谢产物对代谢相关性脂肪肝进展的影响
Q2 Medicine Pub Date : 2023-12-01 DOI: 10.24920/004220
Yuan-Yuan Wang, Hai-Lian Lin, Ke-Lang Wang, Gen-Xiang Que, Ting Cao, La-Mei Zhu, Xia Yang, Xue-Feng Yang

Metabolic associated fatty liver disease (MAFLD) has become a prevalent chronic liver disease worldwide because of lifestyle and dietary changes. Gut microbiota and its metabolites have been shown to play a critical role in the pathogenesis of MAFLD. Understanding of the function of gut microbiota and its metabolites in MAFLD may help to elucidate pathological mechanisms, identify diagnostic markers, and develop drugs or probiotics for the treatment of MAFLD. Here we review the pathogenesis of MAFLD by gut microbiota and its metabolites and discuss the feasibility of treating MAFLD from the perspective of gut microbes.

由于生活方式和饮食习惯的改变,代谢相关性脂肪肝(MAFLD)已成为全球流行的慢性肝病。肠道微生物群及其代谢产物已被证明在代谢相关性脂肪肝的发病机制中起着至关重要的作用。了解肠道微生物群及其代谢产物在 MAFLD 中的功能有助于阐明病理机制、确定诊断标志物以及开发治疗 MAFLD 的药物或益生菌。在此,我们回顾了肠道微生物群及其代谢产物对 MAFLD 的致病机理,并从肠道微生物的角度探讨了治疗 MAFLD 的可行性。
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引用次数: 0
Differentiation Between Amyotrophic Lateral Sclerosis and Mimics Using Quantitative Analysis of Fsciculation with Muscle Ultrasound. 肌萎缩侧索硬化症和类似症的鉴别:肌肉超声定量分析。
Q2 Medicine Pub Date : 2023-12-01 DOI: 10.24920/004282
Jing Fan, Yi Li, Jing-Wen Niu, Nan Hu, Yu-Zhou Guan, Li-Ying Cui, Ming-Sheng Liu

Objective To determine the diagnostic accuracy of the intensity of fasciculation evaluated by muscle ultrasound in the differential diagnosis of amyotrophic lateral sclerosis (ALS). Methods We prospectively recruited patients who had ALS and neuropathy-radiculopathy attending Peking Union Medical College Hospital from 2017 to 2020. Healthy adults from a community were recruited as healthy controls. Muscle strength was assessed using the Medical Research Council (MRC) scale. At the first visit to the hospital, patients were assessed for maximal grade of fasciculations, total fasciculation score, and fasciculation grade in 16 muscle groups of bilateral upper and lower limbs using ultrasonography. The sensitivity and specificity of maximal grade of fasciculations, total fasciculation score, and fasciculation grade for the diagnosis of ALS were assessed by receiver operating characteristic analyses. Results The percentage of limb muscles with a maximal fasciculation grade higher than grade 2 in ALS patients and neuropathy-radiculopathy patients was 84.9% and 9.8%, respectively (χ2 = 172.436, P < 0.01). Of the 16 limb muscles detected, the total fasciculation score [median (interquartile range)] was 29 (15, 41) in ALS patients and 3 (0, 8) in neuropathy-radiculopathy patients (Z = 9.642, P < 0.001). Remarkable fasciculations were seen in ALS patients whose muscles with a MRC score ranging from 2 to 4, followed by patients with MRC score 5, and then in those with MRC score 0 and 1. The sensitivity and specificity of total fasciculation score for diagnosis of ALS were 80.6% and 93.4%, respectively (cut-off value 14). In patients with ALS, for muscles with MRC score 4 and 5, the percentage of muscles with fasciculation grades ≥ 3 was 42.3% and 24.1% respectively, while in neuropathy-radiculopathy patients, the percentage for muscles with MRC score 4 and 5 was only 1.7% and 0, respectively. Conclusion A combined analysis of fasciculation intensity and MRC score of the limb muscles may be helpful for differential diagnosis of ALS.

目的确定肌肉超声评估的束带强度在肌萎缩侧索硬化症(ALS)鉴别诊断中的准确性。方法前瞻性分析北京协和医院2017~2020年收治的ALS患者。招募了61名神经根病患者和22名健康对照者作为对照。医学研究委员会(MRC)评定肌肉力量的量表。在第一次就诊时,使用超声检查对16个肌肉组的患者进行了最大束层分级、总束层评分和束层分级评估。受试者操作特征曲线和曲线下面积用于计算区分ALS和ALS模拟物时最大束层分级、总束层评分和束层分级的敏感性和特异性。Spearman相关分析用于分析束状分级与疾病持续时间、ALSFRS评分、四肢肌肉MRC总分、肌肉MRC评分、发病年龄和发病区域的相关性。结果84.9%的ALS患者和9.8%的神经根性神经病患者的肢体肌肉最大束支分级高于2级(χ2=101.3,P<0.01),16块肢体肌肉的总束支得分在ALS患者中分别为29(15,41)和3(0,8)[中位数(P25,P75)]。在医学研究委员会(MRC)评分在2到4之间的肌肉中可以看到显著的束状,其次是MRC评分5,然后是MRC得分0和1的肌肉。对于总束分裂评分,诊断ALS的敏感性和特异性分别为80.6%和93.4%(截止值14)。当医学研究委员会分别为4岁和5岁时,42.3%和24.1%的肌萎缩侧索硬化症患者的肌束分级≥3,而只有1.7%和0名神经根病患者的肌团分级≥3。结论肢体肌束强度和MRC评分的联合分析有助于ALS的鉴别诊断。
{"title":"Differentiation Between Amyotrophic Lateral Sclerosis and Mimics Using Quantitative Analysis of Fsciculation with Muscle Ultrasound.","authors":"Jing Fan, Yi Li, Jing-Wen Niu, Nan Hu, Yu-Zhou Guan, Li-Ying Cui, Ming-Sheng Liu","doi":"10.24920/004282","DOIUrl":"10.24920/004282","url":null,"abstract":"<p><p>Objective To determine the diagnostic accuracy of the intensity of fasciculation evaluated by muscle ultrasound in the differential diagnosis of amyotrophic lateral sclerosis (ALS). Methods We prospectively recruited patients who had ALS and neuropathy-radiculopathy attending Peking Union Medical College Hospital from 2017 to 2020. Healthy adults from a community were recruited as healthy controls. Muscle strength was assessed using the Medical Research Council (MRC) scale. At the first visit to the hospital, patients were assessed for maximal grade of fasciculations, total fasciculation score, and fasciculation grade in 16 muscle groups of bilateral upper and lower limbs using ultrasonography. The sensitivity and specificity of maximal grade of fasciculations, total fasciculation score, and fasciculation grade for the diagnosis of ALS were assessed by receiver operating characteristic analyses. Results The percentage of limb muscles with a maximal fasciculation grade higher than grade 2 in ALS patients and neuropathy-radiculopathy patients was 84.9% and 9.8%, respectively (<i>χ<sup>2</sup></i> = 172.436, <i>P</i> < 0.01). Of the 16 limb muscles detected, the total fasciculation score [median (interquartile range)] was 29 (15, 41) in ALS patients and 3 (0, 8) in neuropathy-radiculopathy patients (<i>Z</i> = 9.642, <i>P</i> < 0.001). Remarkable fasciculations were seen in ALS patients whose muscles with a MRC score ranging from 2 to 4, followed by patients with MRC score 5, and then in those with MRC score 0 and 1. The sensitivity and specificity of total fasciculation score for diagnosis of ALS were 80.6% and 93.4%, respectively (cut-off value 14). In patients with ALS, for muscles with MRC score 4 and 5, the percentage of muscles with fasciculation grades ≥ 3 was 42.3% and 24.1% respectively, while in neuropathy-radiculopathy patients, the percentage for muscles with MRC score 4 and 5 was only 1.7% and 0, respectively. Conclusion A combined analysis of fasciculation intensity and MRC score of the limb muscles may be helpful for differential diagnosis of ALS.</p>","PeriodicalId":35615,"journal":{"name":"Chinese Medical Sciences Journal","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41184365","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Advances in the Clinical Application of Trendelenburg Position. Trendelenburg体位的临床应用进展。
Q2 Medicine Pub Date : 2023-12-01 DOI: 10.24920/004231
Qing Qiu, Xu Shen

The Trendelenburg position and reverse Trendelenburg position are frequently employed during lower abdominal surgery to achieve optimal surgical field visualization and complete exposure of the operative site, particularly under pneumoperitoneum conditions. However, these positions can have significant impacts on the patient's physiological functions. This article overviews the historical background of Trendelenburg position and reverse Trendelenbury position, their effects on various physiological functions, recent advancements in their clinical applications, and strategies for preventing and managing associated complications.

Trendelenburg体位(TP)和反向TP (RTP)在下腹部手术中经常使用,以获得最佳的手术视野可视化和手术部位的完全暴露,特别是在气腹条件下。然而,这些体位会对患者的生理功能产生重大影响。本文综述了TP和RTP的历史背景,它们对各种生理功能的影响,它们的临床应用的最新进展,以及预防和处理相关并发症的策略。
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引用次数: 0
Regulations for the Manufacture and Control of Live Poliovirus Vaccine: International Experience and China's Path. 国际经验与中国道路:中国脊髓灰质炎活疫苗生产和控制法规的发展历程与启示》。
Q2 Medicine Pub Date : 2023-12-01 DOI: 10.24920/004284
Miao Wu

The eradication of poliomyelitis is a landmark achievement in the history of public health, providing strong protection for children's health. The introduction of the Chinese Regulations for the Manufacture and Control of Live Poliovirus Vaccine is a prerequisite and safeguard for the large-scale production and use of domestically produced live poliovirus vaccines, serving as an indispensable component of vaccine safety. This article, based on archival documents, letters, collections of essays, and oral interviews, examines the historical experience of the development of Chinese Regulations for the Manufacture and Control of Live Poliovirus Vaccine. It contends that the emphasis on localization and the active engagement in international cooperation are critical factors in the swift introduction of Chinese Regulations for the Manufacture and Control of Live Poliovirus Vaccine.

消灭脊髓灰质炎是公共卫生史上具有里程碑意义的成就,为儿童健康提供了有力保障。中国脊髓灰质炎活疫苗生产和管理条例》的出台是大规模生产和使用国产脊髓灰质炎活疫苗的前提和保障,是疫苗安全不可或缺的组成部分。本文以档案文件、信件、论文集和口述访谈为基础,梳理了《中国脊髓灰质炎活疫苗生产和管理条例》制定的历史经验。文章认为,重视本土化和积极参与国际合作是《中国脊髓灰质炎活疫苗生产和控制规范》得以迅速出台的关键因素。
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引用次数: 0
Prognostic Prediction Value and Biological Functions of Non-Apoptotic Regulated Cell Death Genes in Lung Adenocarcinoma [肺腺癌中非凋亡调控细胞死亡基因的预后预测价值和生物学功能]。
Q2 Medicine Pub Date : 2023-09-01 DOI: 10.24920/004222
Hao-Ling Li , Jun-Xian Wang , Heng-Wen Dai , Jun-Jie Liu , Zi-Yang Liu , Ming-Yuan Zou , Lei Zhang , Wen-Rui Wang

Objective

To explore the potential biological functions and prognostic prediction values of non-apoptotic regulated cell death genes (NARCDs) in lung adenocarcinoma.

Methods

Transcriptome data of lung adenocarcinoma were downloaded from The Cancer Genome Atlas and Gene Expression Omnibus databases. We identified differentially expressed NARCDs between lung adenocarcinoma tissues and normal tissues with R software. NARCDs signature was constructed with univariate Cox regression analysis and the least absolute shrinkage and selection operator Cox regression. The prognostic predictive capacity of NARCDs signature was assessed by Kaplan-Meier survival curve, receiver operating characteristic curve, and univariate and multivariate Cox regression analyses. Functional enrichment of NARCDs signature was analyzed with gene set variation analysis, Gene Ontology, and Kyoto Encyclopedia of Genes and Genomes. In addition, differences in tumor mutational burden, tumor microenvironment, tumor immune dysfunction and exclusion score, and chemotherapeutic drug sensitivity were analyzed between the high and low NARCDs score groups. Finally, a protein-protein interaction network of NARCDs and immune-related genes was constructed by STRING and Cytoscape software.

Results

We identified 34 differentially expressed NARCDs associated with the prognosis, of which 16 genes (ATIC, AURKA, CA9, ITGB4, DDIT4, CDK5R1, CAV1, RRM2, GAPDH, SRXN1, NLRC4, GLS2, ADRB2, CX3CL1, GDF15, and ADRA1A) were selected to construct a NARCDs signature. NARCDs signature was identified as an independent prognostic factor (P < 0.001). Functional analysis showed that there were significant differences in mismatch repair, pS3 signaling pathway, and cell cycle between the high NARCDs score group and low NARCDs score group (all P < 0.05). The NARCDs low score group had lower tumor mutational burden, higher immune score, higher tumor immune dysfunction and exclusion score, and lower drug sensitivity (all P < 0.05). In addition, the 10 hub genes (CXCL5, TLR4JUN, IL6, CCL2, CXCL2, ILA, IFNG, IL33, and GAPDH) in protein-protein interaction network of NARCDs and immune-related genes were all immune-related genes.

Conclusion

The NARCDs prognostic signature based on the above 16 genes is an independent prognostic factor, which can effectively predict the clinical prognosis of patients of lung adenocarcinoma and provide help for clinical treatment.

目的探讨非凋亡调控细胞死亡基因(NARCDs)在肺腺癌中的潜在生物学功能和预后预测价值。方法从癌症基因组图谱和基因表达综合数据库下载肺腺癌的转录组数据。我们用R软件鉴定了肺腺癌组织和正常组织之间差异表达的NARCDs。NARCDs签名采用单变量Cox回归分析和最小绝对收缩和选择算子Cox回归构建。通过Kaplan-Meier生存曲线、受试者操作特征曲线以及单变量和多变量Cox回归分析来评估NARCDs特征的预后预测能力。使用基因集变异分析、基因本体论和京都基因和基因组百科全书分析NARCDs签名的功能富集。此外,分析了高和低NARCDs评分组在肿瘤突变负荷、肿瘤微环境、肿瘤免疫功能障碍和排斥评分以及化疗药物敏感性方面的差异。最后,利用STRING和Cytoscape软件构建了NARCDs与免疫相关基因的蛋白质-蛋白质相互作用网络。结果我们鉴定了34个与预后相关的差异表达的NARCDs,其中选择了16个基因(ATIC、AURKA、CA9、ITGB4、DDIT4、CDK5R1、CAV1、RRM2、GAPDH、SRXN1、NLRC4、GLS2、ADRB2、CX3CL1、GDF15和ADRA1A)来构建NARACDs标记。NARCDs标记被确定为一个独立的预后因素(P<0.001)。功能分析显示,高NARCDs评分组和低NARCDs分数组在错配修复、p53信号通路和细胞周期方面存在显著差异(均P<0.05),NARCDs蛋白-蛋白相互作用网络中的10个hub基因(CXCL5、TLR4、JUN、IL6、CCL2、CXCL2、ILA、IFNG、IL33和GAPDH)和免疫相关基因均为免疫相关基因。结论基于上述16个基因的NARCDs预后标志是一个独立的预后因素,可有效预测肺腺癌患者的临床预后,为临床治疗提供帮助。
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引用次数: 0
期刊
Chinese Medical Sciences Journal
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