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Internet of things (IoT) imbedded point-of-care SARS-CoV-2 testing in the pandemic and post-pandemic era 在大流行和大流行后时代,物联网(IoT)嵌入式SARS-CoV-2即时检测
Q1 Medicine Pub Date : 2022-12-01 DOI: 10.1016/j.bsheal.2022.09.005
Zhaoxi Wang , Simin Liu

The outbreaks of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Omicron variant in China have revealed a high rate of asymptomatic cases, making isolation and quarantine measures exceedingly difficult. Public health surveillance and intervention measures will require rapid and accurate testing preferably on-site using point-of-care tests (POCTs) technology for SARS-CoV-2 variants. However, delayed and/or inaccurate surveillance data is a major obstacle blocking the large-scale implementation of POCTs in curbing spread of infectious pathogens and reducing mortality during an outbreak. To determine levels of community transmission and timely strategies accordingly, highly sensitive and specific POCT embedded with the internet of things (IoT) technology could enable on-site screening and real-time data collection. A new Rapid Amplification with Sensitivity And Portability point-of-care test (RASAP-POCT) system based on thermal convection PCR is the first IoT-based isothermal nucleic acid amplification POCT, which can provide test results within 20–30 min using saliva and/or nasopharyngeal swab samples without nucleic acid extraction. With the IoT-imbedded feature, the RASAP-POCT system can be integrated easily and smoothly with China’s existing mobile-phone-based contact tracing system, which has previously proved to be highly effective in maintaining the dynamic zero-COVID policy. Current regulatory guidelines and rules should be modified to accelerate the adoption of new technologies under an emergency use authorization (EUA).

中国爆发的严重急性呼吸综合征冠状病毒2 (SARS-CoV-2)染色体变异无症状病例率高,隔离检疫工作非常困难。公共卫生监测和干预措施将需要对SARS-CoV-2变体进行快速和准确的检测,最好是使用即时检测技术进行现场检测。然而,延迟和/或不准确的监测数据是阻碍大规模实施poct以遏制传染性病原体传播和降低疫情期间死亡率的主要障碍。为了确定社区传播水平和相应的及时策略,嵌入物联网(IoT)技术的高灵敏度和特异性POCT可以实现现场筛查和实时数据收集。基于热对流PCR的新型快速扩增(RASAP-POCT)系统是首个基于物联网的等温核酸扩增POCT系统,无需核酸提取,只需唾液和/或鼻咽拭子样品,即可在20-30分钟内提供检测结果。凭借嵌入物联网的特点,RASAP-POCT系统可以轻松、顺畅地与中国现有的基于手机的接触者追踪系统集成,该系统此前已被证明在维护动态零冠政策方面非常有效。应修改现行的监管准则和规则,以加快在紧急使用授权下采用新技术。
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引用次数: 0
Access and benefit-sharing of the pathogenic microorganisms such as SARS-CoV-2 SARS-CoV-2等病原微生物的获取和惠益分享
Q1 Medicine Pub Date : 2022-12-01 DOI: 10.1016/j.bsheal.2022.05.003
Yalin Zhai , Geng Hong , Mengnan Jiang , Qiang Wei

With the outbreak of coronavirus disease 2019 (COVID-19), it is essential to share pathogens and their data information safely, transparently, and timely. At the same time, it is also worth exploring how to share the benefits of using the provided pathogenic microorganisms fairly and equitably. There are some mechanisms for the management and sharing of pathogenic microbial resources in the world, such as the World Health Organization (WHO), the United States, the Europe, and China. This paper studies these mechanisms and puts forward “PICC” principles, including public welfare principle, interests principle, classified principle, and category principle, to strengthen cooperation, improve efficiency, and maintain biosafety.

随着2019冠状病毒病(COVID-19)的爆发,安全、透明、及时地共享病原体及其数据信息至关重要。同时,如何公平、公正地分享所提供的病原微生物的效益也是值得探讨的问题。病原微生物资源的管理和共享在世界上有一些机制,如世界卫生组织(WHO)、美国、欧洲和中国。本文对这些机制进行了研究,提出了“PICC”原则,包括公益原则、利益原则、分类原则和类别原则,以加强合作,提高效率,维护生物安全。
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引用次数: 0
Integrating research infrastructures into infectious diseases surveillance operations: Focus on biobanks 将研究基础设施纳入传染病监测行动:重点放在生物库上
Q1 Medicine Pub Date : 2022-12-01 DOI: 10.1016/j.bsheal.2022.10.001
Plebeian B. Medina , Jennifer Kealy , Zisis Kozlakidis

Technological advances in the first two decades of the 21st century have profoundly impacted medical research in many ways, with large population cohorts, biological sample collections and datasets through biobanks becoming valued global resources to guide biomedical research, drug development, and medical practice. However, in order for biobanks to maximize their impact and scientific reach of their resources, they would need to act within a complex network of infrastructures and activities. Therefore, different ways have emerged in which biobanks, including those for infectious diseases, can emerge as (part of) infrastructures, integrate within existing ones, or become an independent, yet an interoperable component of the existing infrastructural landscape. However, there has been a limited understanding and study of such mechanisms to date. This perspective aims to address this knowledge gap and illustrates these three high-level ways in which such infrastructures could integrate their activities and identifies the necessary key pre-conditions for doing so, while drawing from specific examples.

21世纪头二十年的技术进步在许多方面深刻影响了医学研究,通过生物银行收集的大量人口、生物样本和数据集成为指导生物医学研究、药物开发和医疗实践的宝贵全球资源。然而,为了使生物银行最大限度地发挥其影响和其资源的科学覆盖范围,它们需要在一个复杂的基础设施和活动网络中行动。因此,出现了不同的方式,生物库,包括传染病生物库,可以作为基础设施(一部分)出现,与现有基础设施整合,或成为现有基础设施景观的一个独立但可互操作的组成部分。然而,迄今为止,对这种机制的理解和研究有限。这一观点旨在解决这一知识差距,并说明这些基础设施可以整合其活动的三种高级方法,并确定这样做的必要关键先决条件,同时借鉴具体的例子。
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引用次数: 0
Biological characteristics, biosafety prevention and control strategies for the 2022 multi-country outbreak of monkeypox 2022年猴痘多国暴发的生物学特征及生物安全防控策略
Q1 Medicine Pub Date : 2022-12-01 DOI: 10.1016/j.bsheal.2022.11.001
Chudan Liang , Jun Qian , Linna Liu

Monkeypox is a zoonotic disease caused by the monkeypox virus (MPXV), which is a potential biological warfare agent of bioterrorism and poses the greatest threat to the world’s public biosafety and health after variola virus (VARV). While the coronavirus disease 2019 (COVID-19) pandemic has not ended yet, monkeypox is spreading menacingly. The first case of monkeypox in a nonendemic country was confirmed on May 6th, 2022, while the first imported case from Asia was found on June 21st. There were more than 16 thousand reported cases as of July 23rd, the day the World Health Organization (WHO) declared the global monkeypox outbreak a public health emergency of international concern (PHEIC) at the same level as smallpox and COVID-19; while there were more than 53 thousand cases as of September 1st. Therefore, we will propose relevant biosafety prevention and control strategies after analyzing the etiology of the 2022 multi-country monkeypox outbreak from the biological feature, transmissibility, epidemic, and variability of MPXV.

猴痘是由猴痘病毒(MPXV)引起的人畜共患疾病,是一种潜在的生物恐怖主义生物战剂,是继天花病毒(VARV)之后对世界公共生物安全和健康构成最大威胁的病毒。虽然2019冠状病毒病(COVID-19)大流行尚未结束,但猴痘正在威胁性地传播。非流行国家的首例猴痘病例于2022年5月6日得到确认,而从亚洲输入的首例猴痘病例于6月21日被发现。截至7月23日,即世界卫生组织宣布全球猴痘疫情与天花和COVID-19同级为国际关注的突发公共卫生事件(PHEIC)的当天,已报告病例超过1.6万例;而截至9月1日,已有5.3万多例病例。因此,我们将从MPXV的生物学特征、传播性、流行性和变异性等方面分析2022年猴痘多国暴发的病因,提出相关的生物安全防控策略。
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引用次数: 5
The current emergence of monkeypox: The recurrence of another smallpox? 当前猴痘的出现:另一种天花的复发?
Q1 Medicine Pub Date : 2022-12-01 DOI: 10.1016/j.bsheal.2022.09.004
Tianyu Lu , Zongzhen Wu , Shibo Jiang , Lu Lu , Huan Liu

Since its first confirmation in London on 12 May 2022, many monkeypox cases have been reported worldwide. Noticeably, the epidemiology, pathology, and clinical features of the current emergence have been compared to those of smallpox, a severe contagious disease historically epidemic worldwide for nearly 3,000 years. However, some characteristics of the present outbreak differed from those of previous monkeypox outbreaks. Herein, we ask if this emergence of monkeypox could cause another global pandemic similar to smallpox or influenza or if it is only the re-emergence of a new strain. To address these questions, we reviewed its virology, transmission, clinical characteristics, experimental diagnosis, and prevention and intervention, giving our commentary along the way.

自2022年5月12日在伦敦首次确认猴痘以来,世界各地已报告了许多猴痘病例。值得注意的是,目前出现的流行病学,病理学和临床特征已经与天花进行了比较,天花是一种历史上在全球流行了近3000年的严重传染病。然而,这次暴发的一些特征不同于以往的猴痘暴发。在此,我们想知道猴痘的出现是否会引起类似天花或流感的另一场全球大流行,或者它只是一种新毒株的再次出现。为了解决这些问题,我们回顾了它的病毒学、传播、临床特征、实验诊断、预防和干预,并在此过程中给出了我们的评论。
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引用次数: 8
An imported human case with the SARS-CoV-2 Omicron subvariant BA.2.75 in Yunnan Province, China 云南省输入性人感染SARS-CoV-2基因组亚变体BA.2.75病例
Q1 Medicine Pub Date : 2022-12-01 DOI: 10.1016/j.bsheal.2022.10.003
Meiling Zhang , Zhixiao Chen , Jienan Zhou , Xiaonan Zhao , Yaoyao Chen , Yanhong Sun , Zhaosheng Liu , Wenpeng Gu , Chunrui Luo , Xiaoqing Fu , Xiang Zhao

The Omicron variants spread rapidly worldwide after being initially detected in South Africa in November 2021. It showed increased transmissibility and immune evasion with far more amino acid mutations in the spike (S) protein than the previously circulating variants of concern (VOCs). Notably, on 15 July 2022, we monitored the first VOC / Omicron subvariant BA.2.75 in China from an imported case. Moreover, nowadays, this subvariant still is predominant in India. It has nine additional mutations in the S protein compared to BA.2, three of which (W152R, G446S, and R493Q reversion) might contribute to higher transmissibility and immune escape. This subvariant could cause wider spread and pose a threat to the global situation. Our timely reporting and continuous genomic analysis are essential to fully elucidate the characteristics of the subvariant BA.2.75 in the future.

欧米克隆变异自2021年11月在南非首次发现后,迅速在全球传播。它显示出增加的传播性和免疫逃避,在刺突(S)蛋白中有更多的氨基酸突变,而不是以前循环的关注变体(VOCs)。值得注意的是,在2022年7月15日,我们从一个输入病例中监测到了中国第一个VOC /欧米克隆亚变体BA.2.75。而且,现在这种亚变种在印度仍然占主导地位。与BA.2相比,它在S蛋白上有9个额外的突变,其中3个(W152R、G446S和R493Q逆转)可能有助于更高的传播率和免疫逃逸。这一亚型可能导致更广泛的传播,并对全球局势构成威胁。我们的及时报道和持续的基因组分析对于未来充分阐明BA.2.75亚变体的特征至关重要。
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引用次数: 3
Assessment of biosafety and biorisk management practices among medical laboratory students in two institutions in Uganda 乌干达两所院校医学实验室学生的生物安全和生物风险管理做法评估
Q1 Medicine Pub Date : 2022-12-01 DOI: 10.1016/j.bsheal.2022.08.005
John Roberts Padde , Winnie Akiteng , William Edema , Saad Mahjub Atiku , Julius Tibyangye , Job Tekakwo , Cosmas Andruga , Derick Hope , Benson Musinguzi , Jean Brenda Gesa , Lawrence Amadile , Robert Agondua

Medical laboratory workers handle clinical specimens, which are a threat of exposure to infectious agents. Notably, medical laboratory science students report for internships with only theoretical knowledge of biosafety and biorisk management practices, predisposing them to a higher risk of laboratory hazards. In this study, we assessed the influence of entry-level students' adherence to practices and attitudes towards biosafety and biorisk management during the Internship. An online survey tool was used to explore the practices and attitudes towards laboratory biosafety and risk management. Of the 96 students, 60 (62.5%) anonymous responses were received, and of these, 60.3% were direct entrants, and 32.8% were diploma entrants. Most (91.7%) of the students attended hospital internships, with 60.2% in Biosafety Level (BSL)-2 laboratories and 70.2% rotating in all the core areas of laboratory medicine. The 8.3% who did not attend any internship were under the direct entry category. Exposure to biohazards was not significantly associated with laboratory safety level and student entry category (P> 0.05). Recommended laboratory biosafety practices were not significantly associated with the safety level of the laboratory and student entry category (P> 0.05). Poor attitudes towards certain laboratory biosafety practices were not significantly associated with the biosafety level of the training laboratory (P> 0.05), whereas training (P = 0.021) and clean-up procedures (P = 0.048) were associated with laboratory safety levels, respectively. The direct entrants had no access to BSL-3 laboratories, and this category of students had a negative attitude towards internship attendance. Therefore, there is a need to create a multi-channel full range laboratory biosafety and biorisk management teaching reforms based on practical application, real case studies, and laboratory simulation to be incorporated into the curriculum to benefit the direct entrant.

医学实验室工作人员处理临床标本,这是接触传染性病原体的威胁。值得注意的是,医学实验室专业的学生只有生物安全和生物风险管理实践的理论知识来报告实习,这使他们容易面临更高的实验室危害风险。在本研究中,我们评估了实习期间初级学生对生物安全和生物风险管理的依从性和态度的影响。使用在线调查工具来探讨实验室生物安全和风险管理的做法和态度。在96名学生中,收到60名(62.5%)匿名回复,其中60.3%为直接入读生,32.8%为文凭入读生。大部分(91.7%)学生在医院实习,其中60.2%在生物安全等级(BSL)-2实验室实习,70.2%在检验医学的所有核心领域轮岗。没有参加任何实习工作的8.3%属于直接入职类别。暴露于生物危害与实验室安全水平和学生入学类别没有显著相关(P>0.05)。推荐的实验室生物安全操作与实验室和学生入门类别的安全水平没有显著关联(P>0.05)。对某些实验室生物安全操作的不良态度与培训实验室的生物安全水平没有显著相关(P>0.05),而培训(P = 0.021)和清理程序(P = 0.048)分别与实验室安全水平相关。直接进入者无法进入BSL-3实验室,这类学生对实习出勤率持消极态度。因此,有必要创建一个基于实际应用、真实案例研究和实验室模拟的多渠道全方位实验室生物安全和生物风险管理教学改革,将其纳入课程中,使直接进入者受益。
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引用次数: 0
Genome editing and human rights: Implications of the UNGPs 基因组编辑与人权:ungp的影响
Q1 Medicine Pub Date : 2022-12-01 DOI: 10.1016/j.bsheal.2022.10.002
Leifan Wang , Xiaohui Liang , Weiwen Zhang

How to address the impact of genome editing on human rights is a global challenge. The World Health Organization (WHO) recently developed a governance framework for human genome editing to provide global recommendations for establishing appropriate governance mechanisms for human genome editing. This article suggests that a human rights-respecting approach should be explicitly recognized in the framework and other relevant endeavors. Such recognition has significant implications not only on clarifying the duty of States but also on the responsibility of non-State actors, particularly biotech enterprises, to orient this technology towards respect for human rights. To implement this approach, the United Nations Guiding Principles on Business and Human Rights (UNGPs) provide helpful guidance for States, biotech enterprises, and other stakeholders to raise awareness and enhance responsible practices in the field.

如何应对基因组编辑对人权的影响是一项全球性挑战。世界卫生组织(世卫组织)最近制定了人类基因组编辑治理框架,为建立适当的人类基因组编辑治理机制提供全球建议。本文建议在框架和其他相关努力中明确承认尊重人权的方法。这种承认不仅对澄清国家的义务,而且对澄清非国家行为者,特别是生物技术企业使这种技术面向尊重人权的责任具有重大影响。为落实这一方针,《联合国工商业与人权指导原则》为各国、生物技术企业和其他利益攸关方提供了有益的指导,以提高认识并加强该领域的负责任做法。
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引用次数: 1
Development of two multiplex real-time PCR assays for simultaneous detection and differentiation of monkeypox virus IIa, IIb, and I clades and the B.1 lineage 建立同时检测和分化猴痘病毒IIa、IIb、I支和b1支的两种多重实时PCR方法
Q1 Medicine Pub Date : 2022-12-01 DOI: 10.1016/j.bsheal.2022.10.005
Shuting Huo , Yuda Chen , Roujian Lu , Zhongxian Zhang , Gaoqian Zhang , Li Zhao , Yao Deng , Changcheng Wu , Wenjie Tan

An ongoing multi-country outbreak of monkeypox was reported in May 2022 with several deaths, affecting 107 countries of all six World Health Organization (WHO) regions. The WHO has declared the current monkeypox outbreak to be a Public Health Emergency of International Concern. It is, thus, necessary to rapidly and accurately detect and distinguish different monkeypox virus (MPXV) clades. We designed primers and probes based on the alignment of 138 complete genomes of poxviruses. In Panel 1, we mixed one pair of primers and three probes to detect and differentiate the MPXV Western Africa (IIa, IIb clade) and Congo Basin (I clade) and other orthopoxviruses. In Panel 2, we mixed one pair of primers and two probes to detect the 2022 MPXV (B.1 lineage and its descendant lineages). In addition, we tested the specificity and sensitivity of the assay using real-time PCR. In Panel 1, the assay reproducibly identified various concentrations of two plasmids of the monkeypox virus, whereas other orthopoxviruses did not cross-react. In Panel 2, the probe annealed well to MPXV B.1 and showed the expected linearity. These two multiple real-time assays are inclusive and highly specific for identifying different clades of MPXV.

2022年5月报告了一场正在多国暴发的猴痘疫情,造成数人死亡,影响到世界卫生组织(世卫组织)所有六个区域的107个国家。世界卫生组织宣布目前的猴痘疫情为国际关注的突发公共卫生事件。因此,有必要快速准确地检测和区分不同的猴痘病毒(MPXV)分支。我们基于138个痘病毒全基因组的比对设计了引物和探针。在Panel 1中,我们混合了一对引物和三个探针来检测和区分MPXV西非(IIa, IIb支系)和刚果盆地(I支系)和其他正痘病毒。在Panel 2中,我们混合了一对引物和两个探针来检测2022 MPXV (B.1谱系及其后代谱系)。此外,我们使用实时PCR测试了该检测的特异性和敏感性。在图1中,该试验可重复地鉴定出猴痘病毒的两种质粒的不同浓度,而其他正痘病毒则没有交叉反应。在面板2中,探针退火到MPXV B.1并显示出预期的线性。这两种多重实时检测方法具有包容性和高度特异性,可用于识别MPXV的不同分支。
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引用次数: 12
Sequence difference of angiotensin-converting enzyme 2 between nonhuman primates affects its binding-affinity with SARS-CoV-2 S receptor binding domain 非人类灵长类动物血管紧张素转换酶2序列差异影响其与sars - cov - 2s受体结合域的结合亲和力
Q1 Medicine Pub Date : 2022-10-01 DOI: 10.1016/j.bsheal.2022.09.001
Xiaojun Zhou , Jingjing Zhao , Yefeng Qiu , Rui Jia

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has caused many deaths and contributed to a tremendous public health concern worldwide since 2020. Angiotensin-converting enzyme 2 (ACE2) binds to the SARS-CoV-2 virus as a receptor. The challenge of different nonhuman primate (NHP) species by SARS-CoV-2 virus demonstrated different effects on virus replication and disease pathology. This study characterizes differences between host ACE2 sequences of three NHP species: Macaca mulatta, Macaca fascicularis, and Chlorocebus sabaeus. In addition, the binding affinity between the ACE2 ectodomain and the SARS-CoV-2 S receptor-binding domain (RBD) was analyzed. Variation of ACE2 sequence among NHP species and the binding affinity may account for different susceptibility and responses to SARS-CoV-2 infection.

自2020年以来,严重急性呼吸综合征冠状病毒2 (SARS-CoV-2)已造成许多人死亡,并在全球范围内引发了巨大的公共卫生担忧。血管紧张素转换酶2 (ACE2)作为受体与SARS-CoV-2病毒结合。SARS-CoV-2病毒对不同非人灵长类动物(NHP)的攻击对病毒复制和疾病病理的影响不同。本研究分析了三种非传染性病毒物种——mulatta Macaca、fascicularis Macaca和Chlorocebus sabaeus宿主ACE2序列的差异。此外,还分析了ACE2外域与sars - cov - 2s受体结合域(RBD)的结合亲和力。ACE2序列在不同NHP物种间的差异及其结合亲和力可能是对SARS-CoV-2感染的不同易感性和反应的原因。
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引用次数: 0
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