Pub Date : 2023-12-01Epub Date: 2023-10-13DOI: 10.1016/j.jmro.2023.100134
Ilia Kulikov , Anatoliy A. Vereshchagin , Daniil A. Lukianov , Oleg V. Levin , Jan Behrends
An electron spin echo in a nitroxide-containing polymer cathode film for organic radical batteries is observed for various states of charge at cryogenic temperatures. The EPR-detected state of charge (ESOC), as inferred from the number of paramagnetic centers in the film, is compared to the results of Coulomb counting based on galvanostatic charging. Spin concentration, longitudinal relaxation times and phase memory times strongly correlate with the ESOC. In the discharged film, the spin concentration reaches cm−3, causing a phase memory time 100 ns (shorter than the resonator ring-down time) that hinders the detection of the spin echo. In the charged film, the decreased spin concentration results in a longer between 100 ns and 300 ns that enables spin-echo detection, yet limits the length of the microwave pulse sequence. The short, broad-band pulses cause instantaneous diffusion in the unoxidized domains across the oxidized film, affecting the relative peak intensities in the pulsed EPR spectrum. By simulating the spectral distortion caused by instantaneous diffusion, we obtain information on the local spin concentration, which complements the information on the ‘bulk’ spin concentration determined by electrochemistry and continuous-wave EPR spectroscopy.
{"title":"A nitroxide-containing cathode material for organic radical batteries studied with pulsed EPR spectroscopy","authors":"Ilia Kulikov , Anatoliy A. Vereshchagin , Daniil A. Lukianov , Oleg V. Levin , Jan Behrends","doi":"10.1016/j.jmro.2023.100134","DOIUrl":"https://doi.org/10.1016/j.jmro.2023.100134","url":null,"abstract":"<div><p>An electron spin echo in a nitroxide-containing polymer cathode film for organic radical batteries is observed for various states of charge at cryogenic temperatures. The EPR-detected state of charge (ESOC), as inferred from the number of paramagnetic centers in the film, is compared to the results of Coulomb counting based on galvanostatic charging. Spin concentration, longitudinal relaxation times <span><math><msub><mrow><mi>T</mi></mrow><mrow><mn>1</mn></mrow></msub></math></span> and phase memory times <span><math><msub><mrow><mi>T</mi></mrow><mrow><mi>m</mi></mrow></msub></math></span> strongly correlate with the ESOC. In the discharged film, the spin concentration reaches <span><math><mrow><mfenced><mrow><mn>5</mn><mo>±</mo><mn>3</mn></mrow></mfenced><mo>×</mo><mn>1</mn><msup><mrow><mn>0</mn></mrow><mrow><mn>20</mn></mrow></msup></mrow></math></span> cm<sup>−3</sup>, causing a phase memory time <span><math><mrow><msub><mrow><mi>T</mi></mrow><mrow><mi>m</mi></mrow></msub><mo>≪</mo></mrow></math></span> 100 ns (shorter than the resonator ring-down time) that hinders the detection of the spin echo. In the charged film, the decreased spin concentration results in a longer <span><math><msub><mrow><mi>T</mi></mrow><mrow><mi>m</mi></mrow></msub></math></span> between 100 ns and 300 ns that enables spin-echo detection, yet limits the length of the microwave pulse sequence. The short, broad-band pulses cause instantaneous diffusion in the unoxidized domains across the oxidized film, affecting the relative peak intensities in the pulsed EPR spectrum. By simulating the spectral distortion caused by instantaneous diffusion, we obtain information on the local spin concentration, which complements the information on the ‘bulk’ spin concentration determined by electrochemistry and continuous-wave EPR spectroscopy.</p></div>","PeriodicalId":365,"journal":{"name":"Journal of Magnetic Resonance Open","volume":"16 ","pages":"Article 100134"},"PeriodicalIF":2.624,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2666441023000420/pdfft?md5=88af9c2697fd9712c8b322df95896bb8&pid=1-s2.0-S2666441023000420-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"91962567","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-12-01Epub Date: 2023-07-22DOI: 10.1016/j.jmro.2023.100128
Jérôme Hirschinger, Jésus Raya
In this work, several exact and approximate analytical solutions to the quantum master equation are derived using both classical and non-classical coupling models to describe the kinetics of Hartmann-Hahn cross-polarization (HHCP) and multiple-contact CP (MCCP). Moreover, the analytical solution originally obtained by Naito and McDowell [J. Chem. Phys. 84 (1986) 4181.] is shown to be incorrect and the different regimes of spin diffusion and relaxation are characterized by the amplitude of the second stage of the HHCP dynamics and the HHCP/MCCP crossing time. The analysis of the 1H–13C HHCP and MCCP dynamics together with (Lee-Goldburg) 1H relaxation experimental data provides a consistent picture of spin dynamics in solid alanine and explains the apparent discrepancies previously observed between and relaxation measurements. The CH and CH3 protons relax as expected via spin diffusion towards the NH3 protons but the assumption of common proton spin temperature, in which the bottleneck of relaxation is at the NH3 sites, generally valid for relaxation breaks down for relaxation. A diffusion-limited situation in which nuclear Zeeman energy is transferred to the lattice faster than can be supplied by spin diffusion is observed instead.
{"title":"Analytical descriptions of (multiple-contact) cross-polarization dynamics and spin-lattice relaxation in solid alanine","authors":"Jérôme Hirschinger, Jésus Raya","doi":"10.1016/j.jmro.2023.100128","DOIUrl":"10.1016/j.jmro.2023.100128","url":null,"abstract":"<div><p>In this work, several exact and approximate analytical solutions to the quantum master equation are derived using both classical and non-classical coupling models to describe the kinetics of Hartmann-Hahn cross-polarization (HHCP) and multiple-contact CP (MC<img>CP). Moreover, the analytical solution originally obtained by Naito and McDowell [J. Chem. Phys. 84 (1986) 4181.] is shown to be incorrect and the different regimes of spin diffusion and <span><math><msub><mi>T</mi><mrow><mn>1</mn><mi>ρ</mi></mrow></msub></math></span> relaxation are characterized by the amplitude of the second stage of the HHCP dynamics and the HHCP/MC<img>CP crossing time. The analysis of the <sup>1</sup>H–<sup>13</sup>C HHCP and MC<img>CP dynamics together with (Lee-Goldburg) <sup>1</sup>H <span><math><msub><mi>T</mi><mrow><mn>1</mn><mi>ρ</mi></mrow></msub></math></span> relaxation experimental data provides a consistent picture of spin dynamics in solid alanine and explains the apparent discrepancies previously observed between <span><math><msub><mi>T</mi><mrow><mn>1</mn><mi>ρ</mi></mrow></msub></math></span> and <span><math><msub><mi>T</mi><mn>1</mn></msub></math></span> relaxation measurements. The CH and CH<sub>3</sub> protons relax as expected <em>via</em> spin diffusion towards the NH<sub>3</sub> protons but the assumption of common proton spin temperature, in which the bottleneck of relaxation is at the NH<sub>3</sub> sites, generally valid for <span><math><msub><mi>T</mi><mn>1</mn></msub></math></span> relaxation breaks down for <span><math><msub><mi>T</mi><mrow><mn>1</mn><mi>ρ</mi></mrow></msub></math></span> relaxation. A diffusion-limited situation in which nuclear Zeeman energy is transferred to the lattice faster than can be supplied by spin diffusion is observed instead.</p></div>","PeriodicalId":365,"journal":{"name":"Journal of Magnetic Resonance Open","volume":"16 ","pages":"Article 100128"},"PeriodicalIF":2.624,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2666441023000365/pdfft?md5=8634b4f0bfee2e20f4a4370925e073c3&pid=1-s2.0-S2666441023000365-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"78948571","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-12-01Epub Date: 2023-10-12DOI: 10.1016/j.jmro.2023.100135
Nuwandi M. Ariyasingha , Shiraz Nantogma , Anna Samoilenko , Oleg G. Salnikov , Nikita V. Chukanov , Larisa M. Kovtunova , Igor V. Koptyug , Eduard Y. Chekmenev
Parahydrogen-Induced Polarization (PHIP) is NMR hyperpolarization technique that has matured from fundamental science to a biomedical tool for production of hyperpolarized MRI contrast agents. The spin order of nascent parahydrogen-derived protons can be employed directly for enhancement of their NMR signals or for polarization transfer to other nuclei in the hydrogenation product. In this work, we study the process of pairwise parahydrogen addition to propylene, which results in symmetric propane molecule with substantially enhanced methyl and methylene NMR signals. Specifically, we have synthesized site-selectively isotopically labeled 3-d-propylene molecule to study polarization dynamics in the resulting monodeuterated propane after pairwise parahydrogen addition. The deuterium presence in the hyperpolarized propane product results in a minute isotope chemical shift effect allowing to distinguish the proton resonances of CH3 and CH2D groups at 600 MHz. Pairwise parahydrogen 1,2-addition to 3-d-propylene was first confirmed by performing the reaction inside a 600 MHz NMR spectrometer, i.e., in the weakly-coupled regime at 14 T, where proton polarization dynamics is restricted to the molecular sites of parahydrogen addition. However, when the pairwise parahydrogen addition is performed in the strongly-coupled regime, i.e., at the Earth's magnetic field, efficient polarization transfer to CH2D protons is readily observed, leading to polarization redistribution between the three inequivalent sites. This finding is important as it sheds light on polarization dynamics in the strongly coupled symmetric spin systems such as propane studied here—the presented results are expected to be applicable to other spin systems such as butane.
{"title":"Efficient polarization redistribution in hyperpolarized 1-D-propane produced via pairwise parahydrogen addition","authors":"Nuwandi M. Ariyasingha , Shiraz Nantogma , Anna Samoilenko , Oleg G. Salnikov , Nikita V. Chukanov , Larisa M. Kovtunova , Igor V. Koptyug , Eduard Y. Chekmenev","doi":"10.1016/j.jmro.2023.100135","DOIUrl":"https://doi.org/10.1016/j.jmro.2023.100135","url":null,"abstract":"<div><p>Parahydrogen-Induced Polarization (PHIP) is NMR hyperpolarization technique that has matured from fundamental science to a biomedical tool for production of hyperpolarized MRI contrast agents. The spin order of nascent parahydrogen-derived protons can be employed directly for enhancement of their NMR signals or for polarization transfer to other nuclei in the hydrogenation product. In this work, we study the process of pairwise parahydrogen addition to propylene, which results in symmetric propane molecule with substantially enhanced methyl and methylene NMR signals. Specifically, we have synthesized site-selectively isotopically labeled 3-<span>d</span>-propylene molecule to study polarization dynamics in the resulting monodeuterated propane after pairwise parahydrogen addition. The deuterium presence in the hyperpolarized propane product results in a minute isotope chemical shift effect allowing to distinguish the proton resonances of CH<sub>3</sub> and CH<sub>2</sub>D groups at 600 MHz. Pairwise parahydrogen 1,2-addition to 3-<span>d</span>-propylene was first confirmed by performing the reaction inside a 600 MHz NMR spectrometer, <em>i.e</em>., in the weakly-coupled regime at 14 T, where proton polarization dynamics is restricted to the molecular sites of parahydrogen addition. However, when the pairwise parahydrogen addition is performed in the strongly-coupled regime, <em>i.e</em>., at the Earth's magnetic field, efficient polarization transfer to CH<sub>2</sub>D protons is readily observed, leading to polarization redistribution between the three inequivalent sites. This finding is important as it sheds light on polarization dynamics in the strongly coupled symmetric spin systems such as propane studied here—the presented results are expected to be applicable to other spin systems such as butane.</p></div>","PeriodicalId":365,"journal":{"name":"Journal of Magnetic Resonance Open","volume":"16 ","pages":"Article 100135"},"PeriodicalIF":2.624,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2666441023000432/pdfft?md5=27574b8b0966d42351dc5e56ded5517c&pid=1-s2.0-S2666441023000432-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"92087351","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-12-01Epub Date: 2023-07-13DOI: 10.1016/j.jmro.2023.100129
Keilian MacCulloch , Austin Browning , David O. Guarin Bedoya , Stephen J. McBride , Mustapha B. Abdulmojeed , Carlos Dedesma , Boyd M. Goodson , Matthew S. Rosen , Eduard Y. Chekmenev , Yi-Fen Yen , Patrick TomHon , Thomas Theis
Hyperpolarization chemistry based on reversible exchange of parahydrogen, also known as Signal Amplification By Reversible Exchange (SABRE), is a particularly simple approach to attain high levels of nuclear spin hyperpolarization, which can enhance NMR and MRI signals by many orders of magnitude. SABRE has received significant attention in the scientific community since its inception because of its relative experimental simplicity and its broad applicability to a wide range of molecules, however, in vivo detection of molecular probes hyperpolarized by SABRE has remained elusive. Here we describe a first demonstration of SABRE-hyperpolarized contrast detected in vivo, specifically using hyperpolarized [1–13C]pyruvate. Biocompatible formulations of hyperpolarized [1–13C]pyruvate in, both, methanol-water, and ethanol-water mixtures followed by dilution with saline and catalyst filtration were prepared and injected into healthy Sprague Dawley and Wistar rats. Effective hyperpolarization-catalyst removal was performed with silica filters without major losses in hyperpolarization. Metabolic conversion of pyruvate to lactate, alanine, and bicarbonate was detected in vivo. Pyruvate-hydrate was also observed as a minor byproduct. Measurements were performed on the liver and kidney at 4.7 T via time-resolved spectroscopy and chemical-shift-resolved MRI. In addition, whole-body metabolic measurements were obtained using a cryogen-free 1.5 T MRI system, illustrating the utility of combining lower-cost MRI systems with simple, low-cost hyperpolarization chemistry to develop safe and scalable molecular imaging.
基于对氢可逆交换的超极化化学,也称为可逆交换信号放大(SABRE),是获得高水平核自旋超极化的一种特别简单的方法,可以将核磁共振和核磁共振信号增强许多数量级。自SABRE问世以来,由于其相对简单的实验和广泛的分子适用性,在科学界受到了极大的关注,然而,通过SABRE进行超极化分子探针的体内检测仍然难以捉摸。在这里,我们描述了首次在体内检测sabre超偏振造影剂的演示,特别是使用超极化[1-13C]丙酮酸。在甲醇-水和乙醇-水混合物中制备具有生物相容性的超极化[1-13C]丙酮酸制剂,然后用生理盐水稀释和催化剂过滤,并注射到健康的Sprague Dawley和Wistar大鼠体内。用二氧化硅过滤器进行了有效的超极化-催化剂去除,而超极化损失不大。在体内检测了丙酮酸转化为乳酸、丙氨酸和碳酸氢盐的代谢。水合物丙酮酸也被观察到是一个次要的副产物。在4.7 T时,通过时间分辨光谱和化学位移分辨MRI对肝脏和肾脏进行测量。此外,使用无低温1.5 T MRI系统获得了全身代谢测量,说明了将低成本MRI系统与简单,低成本的超极化化学相结合以开发安全且可扩展的分子成像的有效性。
{"title":"Facile hyperpolarization chemistry for molecular imaging and metabolic tracking of [1–13C]pyruvate in vivo","authors":"Keilian MacCulloch , Austin Browning , David O. Guarin Bedoya , Stephen J. McBride , Mustapha B. Abdulmojeed , Carlos Dedesma , Boyd M. Goodson , Matthew S. Rosen , Eduard Y. Chekmenev , Yi-Fen Yen , Patrick TomHon , Thomas Theis","doi":"10.1016/j.jmro.2023.100129","DOIUrl":"https://doi.org/10.1016/j.jmro.2023.100129","url":null,"abstract":"<div><p>Hyperpolarization chemistry based on reversible exchange of parahydrogen, also known as Signal Amplification By Reversible Exchange (SABRE), is a particularly simple approach to attain high levels of nuclear spin hyperpolarization, which can enhance NMR and MRI signals by many orders of magnitude. SABRE has received significant attention in the scientific community since its inception because of its relative experimental simplicity and its broad applicability to a wide range of molecules, however, <em>in vivo</em> detection of molecular probes hyperpolarized by SABRE has remained elusive. Here we describe a first demonstration of SABRE-hyperpolarized contrast detected <em>in vivo</em>, specifically using hyperpolarized [1–<sup>13</sup>C]pyruvate. Biocompatible formulations of hyperpolarized [1–<sup>13</sup>C]pyruvate in, both, methanol-water, and ethanol-water mixtures followed by dilution with saline and catalyst filtration were prepared and injected into healthy Sprague Dawley and Wistar rats. Effective hyperpolarization-catalyst removal was performed with silica filters without major losses in hyperpolarization. Metabolic conversion of pyruvate to lactate, alanine, and bicarbonate was detected <em>in vivo</em>. Pyruvate-hydrate was also observed as a minor byproduct. Measurements were performed on the liver and kidney at 4.7 T via time-resolved spectroscopy and chemical-shift-resolved MRI. In addition, whole-body metabolic measurements were obtained using a cryogen-free 1.5 T MRI system, illustrating the utility of combining lower-cost MRI systems with simple, low-cost hyperpolarization chemistry to develop safe and scalable molecular imaging.</p></div>","PeriodicalId":365,"journal":{"name":"Journal of Magnetic Resonance Open","volume":"16 ","pages":"Article 100129"},"PeriodicalIF":2.624,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"3266171","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-12-01Epub Date: 2023-08-08DOI: 10.1016/j.jmro.2023.100131
T.B.W. Mathiassen , A.E. Høgh , M. Karlsson , S. Katsikis , K. Wang , M. Pennestri , J.H. Ardenkjær-Larsen , P.R. Jensen
Hyperpolarization with the dissolution dynamic nuclear polarization (dDNP) technique yields > 10,000-fold signal increases for NMR-active nuclei (e.g. 13C). Hyperpolarized 13C-labeled metabolic tracer molecules thus allow real-time observations of biochemical pathways in living cellular systems without interfering background. This methodology lends itself to the direct observation of altered intracellular reaction chemistry imparted for instance by drug treatment, infections, or other diseases. A reoccurring challenge for longitudinal cell studies of mammalian cells with NMR and dDNP-NMR is maintaining cell viability in the NMR spectrometer. 3D cell culture methods are increasing in popularity because they provide a physiologically more relevant environment compared to 2D cell cultures. Based on such strategies a mobile 3D culture system was devised. The clinical drug etoposide was used to treat cancer cells (HeLa) and the resulting altered metabolism was measured using hyperpolarized [1–13C]pyruvate. We show that sustaining the cell cultivation in cell incubators and only transferring the cells to the NMR spectrometer for the few minutes required for the dDNP-NMR measurements is an attractive alternative to cell maintenance in the NMR tube. High cell viability is sustained, and experimental throughput is many doubled.
{"title":"Hyperpolarized 13C NMR for longitudinal in-cell metabolism using a mobile 3D cell culture system","authors":"T.B.W. Mathiassen , A.E. Høgh , M. Karlsson , S. Katsikis , K. Wang , M. Pennestri , J.H. Ardenkjær-Larsen , P.R. Jensen","doi":"10.1016/j.jmro.2023.100131","DOIUrl":"10.1016/j.jmro.2023.100131","url":null,"abstract":"<div><p>Hyperpolarization with the dissolution dynamic nuclear polarization (dDNP) technique yields > 10,000-fold signal increases for NMR-active nuclei (e.g. <sup>13</sup>C). Hyperpolarized <sup>13</sup>C-labeled metabolic tracer molecules thus allow real-time observations of biochemical pathways in living cellular systems without interfering background. This methodology lends itself to the direct observation of altered intracellular reaction chemistry imparted for instance by drug treatment, infections, or other diseases. A reoccurring challenge for longitudinal cell studies of mammalian cells with NMR and dDNP-NMR is maintaining cell viability in the NMR spectrometer. 3D cell culture methods are increasing in popularity because they provide a physiologically more relevant environment compared to 2D cell cultures. Based on such strategies a mobile 3D culture system was devised. The clinical drug etoposide was used to treat cancer cells (HeLa) and the resulting altered metabolism was measured using hyperpolarized [1–<sup>13</sup>C]pyruvate. We show that sustaining the cell cultivation in cell incubators and only transferring the cells to the NMR spectrometer for the few minutes required for the dDNP-NMR measurements is an attractive alternative to cell maintenance in the NMR tube. High cell viability is sustained, and experimental throughput is many doubled.</p></div>","PeriodicalId":365,"journal":{"name":"Journal of Magnetic Resonance Open","volume":"16 ","pages":"Article 100131"},"PeriodicalIF":2.624,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2666441023000390/pdfft?md5=1fb698b32491f80f5153bc638f0b5899&pid=1-s2.0-S2666441023000390-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"86035083","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-12-01Epub Date: 2023-03-05DOI: 10.1016/j.jmro.2023.100102
Christopher A. Waudby , Ignacio Alfonso
Molecules are dynamic entities, and understanding intra- and inter-molecular reactions and changes in conformation is one of the most fascinating, important and complex subjects in NMR. Conformational changes and chemical reactions result in observed spins exchanging between different magnetic environments, and the sensitivity of NMR spectra to such dynamic processes has been recognised since the earliest days of the field. Careful analysis of such spectra, acquired using one- or two-dimensional experiments, can provide insight into structural, thermodynamic, kinetic and mechanistic aspects of the underlying exchange process. The theoretical principles of these lineshape analysis methods will be introduced in this article, alongside a practical discussion of calculation methods, data acquisition and analysis software.
{"title":"An introduction to one- and two-dimensional lineshape analysis of chemically exchanging systems","authors":"Christopher A. Waudby , Ignacio Alfonso","doi":"10.1016/j.jmro.2023.100102","DOIUrl":"https://doi.org/10.1016/j.jmro.2023.100102","url":null,"abstract":"<div><p>Molecules are dynamic entities, and understanding intra- and inter-molecular reactions and changes in conformation is one of the most fascinating, important and complex subjects in NMR. Conformational changes and chemical reactions result in observed spins exchanging between different magnetic environments, and the sensitivity of NMR spectra to such dynamic processes has been recognised since the earliest days of the field. Careful analysis of such spectra, acquired using one- or two-dimensional experiments, can provide insight into structural, thermodynamic, kinetic and mechanistic aspects of the underlying exchange process. The theoretical principles of these lineshape analysis methods will be introduced in this article, alongside a practical discussion of calculation methods, data acquisition and analysis software.</p></div>","PeriodicalId":365,"journal":{"name":"Journal of Magnetic Resonance Open","volume":"16 ","pages":"Article 100102"},"PeriodicalIF":2.624,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"3266169","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
In-cell NMR spectroscopy has emerged as a powerful tool to evaluate protein conformations and dynamics in the native environment of live cells. Here we extend these studies to a multicellular developing vertebrate. Zebrafish (Danio rerio) embryos are complex organisms with dynamic tissue organization and may be well suited for the high resolution NMR analysis of microinjected, isotopically enriched proteins. We used the intrinsically disordered protein Alpha-synuclein (aSyn) as a test model. aSyn has been thoroughly evaluated inside bacterial and mammalian cells, providing good reference points for NMR comparisons and the critical analysis of the advantages and disadvantages of the zebrafish system. High resolution 2D 1H-15N NMR showed that aSyn in zebrafish embryos had the same conformational and biological features previously observed in mammalian cells, including conserved interactions with cellular biomolecules and the establishment of physiological protein post-translational modifications. A direct comparative analysis of gamma-synuclein (gSyn), a naturally occurring homolog of aSyn, in bacteria, mammalian cells and zebrafish embryos confirmed these observations. Our results showed that high resolution in-cell NMR is attainable in embryonic cells within the native environment of a live animal. This system provides more physiological cellular environments for high resolution, in situ protein biophysical studies.
{"title":"High resolution protein in-cell NMR in zebrafish embryos","authors":"Verónica A. Lombardo , Rubina Armesto , Idalia Herrera-Estrada , Andrés Binolfi","doi":"10.1016/j.jmro.2023.100111","DOIUrl":"https://doi.org/10.1016/j.jmro.2023.100111","url":null,"abstract":"<div><p>In-cell NMR spectroscopy has emerged as a powerful tool to evaluate protein conformations and dynamics in the native environment of live cells. Here we extend these studies to a multicellular developing vertebrate. Zebrafish (<em>Danio rerio</em>) embryos are complex organisms with dynamic tissue organization and may be well suited for the high resolution NMR analysis of microinjected, isotopically enriched proteins. We used the intrinsically disordered protein Alpha-synuclein (aSyn) as a test model. aSyn has been thoroughly evaluated inside bacterial and mammalian cells, providing good reference points for NMR comparisons and the critical analysis of the advantages and disadvantages of the zebrafish system. High resolution 2D <sup>1</sup>H-<sup>15</sup>N NMR showed that aSyn in zebrafish embryos had the same conformational and biological features previously observed in mammalian cells, including conserved interactions with cellular biomolecules and the establishment of physiological protein post-translational modifications. A direct comparative analysis of gamma-synuclein (gSyn), a naturally occurring homolog of aSyn, in bacteria, mammalian cells and zebrafish embryos confirmed these observations. Our results showed that high resolution in-cell NMR is attainable in embryonic cells within the native environment of a live animal. This system provides more physiological cellular environments for high resolution, <em>in situ</em> protein biophysical studies.</p></div>","PeriodicalId":365,"journal":{"name":"Journal of Magnetic Resonance Open","volume":"16 ","pages":"Article 100111"},"PeriodicalIF":2.624,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"2623849","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-12-01Epub Date: 2023-10-16DOI: 10.1016/j.jmro.2023.100136
Leonardo A. Pedraza Pérez , Gonzalo A. Álvarez
Magnetic resonance imaging is a powerful, non invasive tool for medical diagnosis. The low sensitivity for detecting the nuclear spin signals, typically limits the image resolution to several tens of micrometers in preclinical systems and millimeters in clinical scanners. Other sources of information, derived from diffusion processes of intrinsic molecules such as water in the tissues, allow getting morphological information at micrometric and submicrometric scales as potential biomarkers of several pathologies. Here we consider extracting this morphological information by probing the distribution of internal magnetic field gradients induced by the heterogeneous magnetic susceptibility of the medium. We use a cumulant expansion to derive the dephasing on the spin signal induced by the molecules that explore these internal gradients while diffusing. Based on the cumulant expansion, we define internal gradient distributions tensors (IGDT) and propose modulating gradient spin echo sequences to probe them. These IGDT contain microstructural morphological information that characterize porous media and biological tissues. We evaluate the IGDT effects on the magnetization decay with typical conditions of brain tissue and show that their effects can be experimentally observed. Our results thus provide a framework for exploiting IGDT as quantitative diagnostic tools.
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Pub Date : 2023-12-01Epub Date: 2023-10-13DOI: 10.1016/j.jmro.2023.100137
Maria Anikeeva , Maitreyi Sangal , Andrey N. Pravdivtsev , Maryia S. Pravdivtseva , Eva Peschke , Oliver Speck , Jan-Bernd Hövener
This study investigates the experimental conditions required for magnetic resonance imaging (MRI) of thermally polarized hydrocarbon gas, focusing on ethane. The nuclear magnetic resonance (NMR) spectra and relaxation properties of ethane were analysed at different pressures in the range from 1.5 to 6 bar at 7 T using 1H NMR spectroscopy. The spin-lattice relaxation time (T1) and spin-spin relaxation time (T2) were measured, and their dependence on the pressure was determined, showing that both relaxation times increase with pressure. Using the estimated relaxation times, we adjusted parameters for imaging of static ethane using rapid acquisition with relaxation enhancement (RARE) and fast low-angle shot (FLASH). The signal-to-noise ratio (SNR) of ethane images was evaluated and compared to the calculation for the given range of pressures. Then, we imaged flowing gas using a 2D velocity-encoded pulse sequence, which is usually used for liquid flow studies. The MRI-measured flow rates are compared to those pre-set with a pump, showing good agreement in the slow flow range. Overall, the results provide insights into the feasibility of 1H MRI for imaging and flow measurements of thermally polarized ethane.
以乙烷为研究对象,研究了热极化烃类气体的磁共振成像(MRI)所需的实验条件。在7 T 1.5 ~ 6 bar的不同压力下,用1H NMR谱分析了乙烷的核磁共振波谱和弛豫特性。测量了自旋-晶格弛豫时间(T1)和自旋-自旋弛豫时间(T2),并确定了它们与压力的依赖关系,结果表明,两者的弛豫时间都随压力的增加而增加。利用估计的弛豫时间,我们调整了静态乙烷成像的参数,采用快速弛豫增强采集(RARE)和快速低角度拍摄(FLASH)。评估了乙烷图像的信噪比(SNR),并与给定压力范围内的计算结果进行了比较。然后,我们使用二维速度编码脉冲序列对流动气体进行成像,这通常用于液体流动研究。mri测量的流量与预先设置的泵流量进行比较,在慢流量范围内显示出良好的一致性。总的来说,这些结果为1H MRI用于热极化乙烷成像和流量测量的可行性提供了见解。
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Pub Date : 2023-12-01Epub Date: 2023-05-20DOI: 10.1016/j.jmro.2023.100123
Atsushi M. Takahashi , Jitendra Sharma , David O. Guarin , Julie Miller , Hiroaki Wakimoto , Daniel P. Cahill , Yi-Fen Yen
We report several inductively coupled RF coil designs that are very easy to construct, produce high signal-to-noise ratio (SNR) and high spatial resolution while accommodating life support, anesthesia and monitoring in small animals. Inductively coupled surface coils were designed for hyperpolarized 13 C MR spectroscopic imaging (MRSI) of mouse brain, with emphases on the simplicity of the circuit design, ease of use, whole-brain coverage, and high SNR. The simplest form was a resonant loop designed to crown the mouse head for a snug fit to achieve full coverage of the brain with high sensitivity when inductively coupled to a broadband pick-up coil. Here, we demonstrated the coil's performance in hyperpolarized 13 C MRSI of a normal mouse and a glioblastoma mouse model at 4.7 T. High SNR exceeding 70:1 was obtained in the brain with good spatial resolution (1.53 mm x 1.53 mm). Similar inductively coupled loop for other X-nuclei can be made very easily in a few minutes and achieve high performance, as demonstrated in 31 P spectroscopy. Similar design concept was expanded to splitable, inductively coupled volume coils for high-resolution proton MRI of marmoset at 3T and 9.4T, to easily accommodate head restraint, vital-sign monitoring, and anesthesia delivery.
我们报告了几种电感耦合射频线圈设计,它们非常容易构建,产生高信噪比(SNR)和高空间分辨率,同时适用于小动物的生命支持,麻醉和监测。设计了用于小鼠脑超极化13c磁共振成像(MRSI)的电感耦合表面线圈,重点是电路设计简单、易于使用、全脑覆盖和高信噪比。最简单的形式是一个谐振回路,设计在鼠标头的顶部,当电感耦合到宽带拾取线圈时,以高灵敏度实现对大脑的全覆盖。在这里,我们展示了线圈在正常小鼠和胶质母细胞瘤小鼠模型4.7 t的超极化13c磁共振成像中的表现,在大脑中获得了超过70:1的高信噪比,具有良好的空间分辨率(1.53 mm x 1.53 mm)。类似的电感耦合环可以很容易地在几分钟内制成其他x核,并达到高性能,如31 P光谱所示。类似的设计概念被扩展到可分裂的电感耦合容积线圈,用于3T和9.4T的狨猴高分辨率质子MRI,以方便地适应头部约束、生命体征监测和麻醉输送。
{"title":"Inductively coupled, transmit-receive coils for proton MRI and X-nucleus MRI/MRS in small animals","authors":"Atsushi M. Takahashi , Jitendra Sharma , David O. Guarin , Julie Miller , Hiroaki Wakimoto , Daniel P. Cahill , Yi-Fen Yen","doi":"10.1016/j.jmro.2023.100123","DOIUrl":"https://doi.org/10.1016/j.jmro.2023.100123","url":null,"abstract":"<div><p>We report several inductively coupled RF coil designs that are very easy to construct, produce high signal-to-noise ratio (SNR) and high spatial resolution while accommodating life support, anesthesia and monitoring in small animals. Inductively coupled surface coils were designed for hyperpolarized <sup>13</sup> C MR spectroscopic imaging (MRSI) of mouse brain, with emphases on the simplicity of the circuit design, ease of use, whole-brain coverage, and high SNR. The simplest form was a resonant loop designed to crown the mouse head for a snug fit to achieve full coverage of the brain with high sensitivity when inductively coupled to a broadband pick-up coil. Here, we demonstrated the coil's performance in hyperpolarized <sup>13</sup> C MRSI of a normal mouse and a glioblastoma mouse model at 4.7 T. High SNR exceeding 70:1 was obtained in the brain with good spatial resolution (1.53 mm x 1.53 mm). Similar inductively coupled loop for other X-nuclei can be made very easily in a few minutes and achieve high performance, as demonstrated in <sup>31</sup> P spectroscopy. Similar design concept was expanded to splitable, inductively coupled volume coils for high-resolution proton MRI of marmoset at 3T and 9.4T, to easily accommodate head restraint, vital-sign monitoring, and anesthesia delivery.</p></div>","PeriodicalId":365,"journal":{"name":"Journal of Magnetic Resonance Open","volume":"16 ","pages":"Article 100123"},"PeriodicalIF":2.624,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"3135445","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}