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Modeling and numerical analysis for mechanical characterization of soft tissue mechanism applying inverse finite element technique 应用逆有限元技术对软组织机构力学特性进行建模与数值分析
IF 1.4 Q3 MATHEMATICS, INTERDISCIPLINARY APPLICATIONS Pub Date : 2023-04-06 DOI: 10.3389/fams.2023.1064130
M. Mulk, Kazi Nusrat Islam, M. H. A. Biswas
Tissue-mimicking materials [e.g., polyvinyl alcohol cryogel (PVA-C)] are extensively used in clinical applications such as tissue repair and tissue engineering. Various mechanical testing techniques have been used to assess the biomechanical compatibility of tissue-mimicking materials. This article presents the development of inverse finite element (FE) techniques that are solved using numerical optimization to characterize the mechanical properties of PVA-C specimens. In this study, a numerical analysis where the displacement influence factor was employed in conjunction with a linear elastic model of finite thickness was performed. In the analysis, the effects of Poisson's ratio, specimen aspect ratio, and relative indentation depth were investigated, and a novel mathematical term was introduced to Sneddon's equation. In addition, a robust optimization algorithm was developed in MATLAB that utilized FE modeling for parameter estimation before it was rigorously validated.
组织模拟材料[如聚乙烯醇低温凝胶(PVA-C)]广泛用于临床应用,如组织修复和组织工程。各种机械测试技术已被用于评估模拟组织材料的生物力学相容性。本文介绍了反有限元(FE)技术的发展,该技术是用数值优化来表征PVA-C试件的力学性能。在本研究中,将位移影响因素与有限厚度的线性弹性模型结合进行了数值分析。在分析中,研究了泊松比、试件长径比和相对压痕深度的影响,并在Sneddon方程中引入了一个新的数学项。此外,在MATLAB中开发了一种鲁棒优化算法,该算法利用有限元建模进行参数估计,并进行了严格验证。
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引用次数: 0
Structured dynamics of the cell-cycle at multiple scales 多尺度细胞周期的结构动力学
IF 1.4 Q3 MATHEMATICS, INTERDISCIPLINARY APPLICATIONS Pub Date : 2023-04-05 DOI: 10.3389/fams.2023.1090753
A. Hodgkinson, Aisha Tursynkozha, D. Trucu
The eukaryotic cell cycle comprises 4 phases (G1, S, G2, and M) and is an essential component of cellular health, allowing the cell to repair damaged DNA prior to division. Facilitating this processes, p53 is activated by DNA-damage and arrests the cell cycle to allow for the repair of this damage, while mutations in the p53 gene frequently occur in cancer. As such, this process occurs on the cell-scale but affects the organism on the cell population-scale. Here, we present two models of cell cycle progression: The first of these is concerned with the cell-scale process of cell cycle progression and the temporal biochemical processes, driven by cyclins and underlying progression from one phase to the next. The second of these models concerns the cell population-scale process of cell-cycle progression and its arrest under the influence of DNA-damage and p53-activation. Both systems take advantage of structural modeling conventions to develop novels methods for describing and exploring cell-cycle dynamics on these two divergent scales. The cell-scale model represents the accumulations of cyclins across an internal cell space and demonstrates that such a formalism gives rise to a biological clock system, with definite periodicity. The cell population-scale model allows for the exploration of interactions between various regulating proteins and the DNA-damage state of the system and quantitatively demonstrates the structural dynamics which allow p53 to regulate the G2- to M-phase transition and to prevent the mitosis of genetically damaged cells. A divergent periodicity and clear distribution of transition times is observed, as compared with the single-cell system. Comparison to a system with a reduced genetic repair rate shows a greater delay in cell cycle progression and an increased accumulation of cell in the G2-phase, as a result of the p53 biochemical feedback mechanism.
真核细胞周期包括4个阶段(G1、S、G2和M),是细胞健康的重要组成部分,允许细胞在分裂前修复受损的DNA。为了促进这一过程,p53被dna损伤激活,并阻止细胞周期以允许这种损伤的修复,而p53基因的突变经常发生在癌症中。因此,这个过程发生在细胞尺度上,但在细胞群尺度上影响生物体。在这里,我们提出了细胞周期进程的两个模型:第一个模型涉及细胞周期进程的细胞尺度过程和时间生化过程,由周期蛋白驱动,从一个阶段到下一个阶段的潜在进展。这些模型中的第二个涉及细胞群体规模的细胞周期进程及其在dna损伤和p53激活影响下的停滞。这两个系统都利用结构建模惯例来开发描述和探索这两个不同尺度上的细胞周期动力学的新方法。细胞尺度模型代表了周期蛋白在细胞内部空间的积累,并证明了这种形式产生了具有明确周期性的生物钟系统。细胞群体规模模型允许探索各种调节蛋白与系统dna损伤状态之间的相互作用,并定量地展示了允许p53调节G2期到m期转变并防止遗传损伤细胞有丝分裂的结构动力学。与单细胞系统相比,观察到不同的周期性和明显的过渡时间分布。与遗传修复率降低的系统相比,由于p53的生化反馈机制,细胞周期进展延迟更大,g2期细胞积累增加。
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引用次数: 0
Combining finite element space-discretizations with symplectic time-marching schemes for linear Hamiltonian systems 线性哈密顿系统的有限元空间离散与辛时间推进格式的结合
IF 1.4 Q3 MATHEMATICS, INTERDISCIPLINARY APPLICATIONS Pub Date : 2023-04-05 DOI: 10.3389/fams.2023.1165371
Bernardo Cockburn, Shukai Du, M. Sánchez
We provide a short introduction to the devising of a special type of methods for numerically approximating the solution of Hamiltonian partial differential equations. These methods use Galerkin space-discretizations which result in a system of ODEs displaying a discrete version of the Hamiltonian structure of the original system. The resulting system of ODEs is then discretized by a symplectic time-marching method. This combination results in high-order accurate, fully discrete methods which can preserve the invariants of the Hamiltonian defining the ODE system. We restrict our attention to linear Hamiltonian systems, as the main results can be obtained easily and directly, and are applicable to many Hamiltonian systems of practical interest including acoustics, elastodynamics, and electromagnetism. After a brief description of the Hamiltonian systems of our interest, we provide a brief introduction to symplectic time-marching methods for linear systems of ODEs which does not require any background on the subject. We describe then the case in which finite-difference space-discretizations are used and focus on the popular Yee scheme (1966) for electromagnetism. Finally, we consider the case of finite-element space discretizations. The emphasis is placed on the conservation properties of the fully discrete schemes. We end by describing ongoing work.
我们简要介绍了一种特殊类型的方法的设计,用于数值逼近哈密顿偏微分方程的解。这些方法使用Galerkin空间离散化,这导致ODE系统显示原始系统的哈密顿结构的离散版本。然后用辛时间推进法对所得的常微分方程组进行离散化。这种组合产生了高阶精确、完全离散的方法,可以保留定义ODE系统的哈密顿量的不变量。我们将注意力局限于线性哈密顿系统,因为主要结果可以简单直接地获得,并且适用于许多实际感兴趣的哈密顿系统,包括声学、弹性动力学和电磁学。在简要描述了我们感兴趣的哈密顿系统之后,我们简要介绍了常微分方程线性系统的辛时间推进方法,该方法不需要任何背景知识。然后,我们描述了使用有限差分空间离散化的情况,并重点介绍了流行的电磁学Yee格式(1966)。最后,我们考虑了有限元空间离散化的情况。重点讨论了完全离散格式的守恒性质。我们最后描述正在进行的工作。
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引用次数: 0
Shimizu–Morioka's chaos synchronization: An efficacy analysis of active control and backstepping methods 清水-盛冈的混沌同步:主动控制和反推方法的有效性分析
IF 1.4 Q3 MATHEMATICS, INTERDISCIPLINARY APPLICATIONS Pub Date : 2023-04-04 DOI: 10.3389/fams.2023.1100147
Absana Tarammim, M. T. Akter
This research study inspects the effectiveness of synchronization methods such as active control and backstepping control from systematic design procedures of a synchronized Shimizu–Morioka system for the same parameter. It aimed to achieve synchronization between the state variables of two identical Shimizu–Morioka chaotic systems by defining the proposed varieties of the error dynamics coefficient matrix. Furthermore, this study also aimed to designed an active controller that enables the synchronization of these systems. The use of designed recursive backstepping nonlinear controllers was based on the Lyapunov function. Furthermore, it also demonstrated the stability of the synchronization of the nonlinear identical Shimizu–Morioka system. The new virtual state variable and establishment of Lyapunov functionals are used in the backstepping controller to stabilize and reduce errors between the Master (MS)/Drive (DS) systems. For comparison, the complexity of active controllers is verified to be such that the designed controller's effectiveness based on backstepping is attainable in engineering applications. Finally, numerical simulations are performed to demonstrate the effectiveness of the proposed synchronization strategy with the Runge–Kutta (RK-4) algorithm of fourth order through MatLab Simulink.
本研究从清水-盛冈同步系统的系统设计过程中检验了相同参数下主动控制和反步控制等同步方法的有效性。它旨在通过定义所提出的误差动力学系数矩阵的变体,实现两个相同清水-盛冈混沌系统的状态变量之间的同步。此外,本研究还旨在设计一种有源控制器,使这些系统能够同步。所设计的递归反推非线性控制器的使用是基于李雅普诺夫函数的。此外,还证明了非线性同型清水-盛冈系统同步的稳定性。在反步控制器中使用了新的虚拟状态变量和Lyapunov泛函的建立来稳定和减少主(MS)/驱动(DS)系统之间的误差。为了进行比较,验证了主动控制器的复杂性,使得基于反步的控制器设计的有效性在工程应用中是可以实现的。最后,通过MatLab Simulink对所提出的四阶Runge–Kutta(RK-4)算法的同步策略进行了数值模拟,验证了其有效性。
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引用次数: 0
A mathematical model on the transmission dynamics of typhoid fever with treatment and booster vaccination 伤寒治疗和加强针接种传播动力学的数学模型
IF 1.4 Q3 MATHEMATICS, INTERDISCIPLINARY APPLICATIONS Pub Date : 2023-04-03 DOI: 10.3389/fams.2023.1151270
Abdulai Kailan Suhuyini, Baba Seidu
Typhoid fever is a potentially fatal illness that is caused by the bacteria Salmonella typhi. In this study, a deterministic mathematical model was formulated to look into transmission dynamics of typhoid fever with treatment and booster vaccination. The reproduction number R0 is calculated using the next-generation matrix approach. Then, a stability analysis on the equilibrium points was performed using Routh–Hurwitz criteria. It was revealed that the disease-free equilibrium point is locally asymptotically stable whenever R0 is less than 1 together with other conditions. We also showed that R0≤1 does not guarantee global stability of the typhoid-free equilibrium point and corroborated the result by showing the possible existence of backward bifurcation at R0=1. The model parameters in R0 were also subjected to sensitivity analysis, which revealed that the transmission rate, infection through an exposed person, and bacteria are the most influential parameters of the reproduction number R0. Numerical simulations were run to determine the impact of various parameters on the dynamics of typhoid.
伤寒是一种潜在的致命疾病,由伤寒沙门氏菌引起。在这项研究中,建立了一个确定性数学模型,以研究伤寒在治疗和加强疫苗接种过程中的传播动力学。使用下一代矩阵方法来计算再现次数R0。然后,使用Routh–Hurwitz准则对平衡点进行稳定性分析。结果表明,当R0小于1时,无病平衡点与其他条件一起是局部渐近稳定的。我们还证明了R0≤1不能保证无伤寒平衡点的全局稳定性,并通过证明在R0=1时可能存在后向分岔来证实这一结果。R0中的模型参数也进行了敏感性分析,结果表明,传播率、通过接触者的感染和细菌是影响繁殖数R0的最大参数。进行了数值模拟,以确定各种参数对伤寒动力学的影响。
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引用次数: 0
Toward AI-designed innovation diffusion policies using agent-based simulations and reinforcement learning: The case of digital tool adoption in agriculture 利用基于代理的模拟和强化学习实现人工智能设计的创新扩散政策:农业中采用数字工具的案例
IF 1.4 Q3 MATHEMATICS, INTERDISCIPLINARY APPLICATIONS Pub Date : 2023-03-31 DOI: 10.3389/fams.2023.1000785
M. Vinyals, R. Sabbadin, S. Couture, L. Sadou, R. Thomopoulos, Kevin Chapuis, Baptiste Lesquoy, P. Taillandier
In this paper, we tackle innovation diffusion from the perspective of an institution which aims to encourage the adoption of a new product (i.e., an innovation) with mostly social rather than individual benefits. Designing such innovation adoption policies is a very challenging task because of the difficulty to quantify and predict its effect on the behaviors of non-adopters and the exponential size of the space of possible policies. To solve these issues, we propose an approach that uses agent-based modeling to simulate in a credible way the behaviors of possible adopters and (deep) reinforcement learning to efficiently explore the policy search space. An application of our approach is presented for the question of the use of digital technologies in agriculture. Empirical results on this case study validate our scheme and show the potential of our approach to learn effective innovation diffusion policies.
在本文中,我们从一个制度的角度来解决创新扩散问题,该制度旨在鼓励采用一种新产品(即创新),主要是社会而不是个人利益。设计这样的创新采用政策是一项非常具有挑战性的任务,因为难以量化和预测其对非采用者行为的影响,以及可能的政策空间的指数大小。为了解决这些问题,我们提出了一种方法,使用基于代理的建模以可信的方式模拟可能的采用者的行为,并(深度)强化学习来有效地探索策略搜索空间。将我们的方法应用于农业中使用数字技术的问题。案例研究的实证结果验证了我们的方案,并显示了我们的方法在学习有效的创新扩散政策方面的潜力。
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引用次数: 0
Statistical and clustering analysis of microseismicity from a Saskatchewan potash mine 萨斯喀彻温省钾矿微震活动的统计与聚类分析
IF 1.4 Q3 MATHEMATICS, INTERDISCIPLINARY APPLICATIONS Pub Date : 2023-03-30 DOI: 10.3389/fams.2023.1126952
M. Sedghizadeh, M. Van den Berghe, R. Shcherbakov
Microseismicity is expected in potash mining due to the associated rock-mass response. This phenomenon is known, but not fully understood. To assess the safety and efficiency of mining operations, producers must quantitatively discern between normal and abnormal seismic activity. In this work, statistical aspects and clustering of microseismicity from a Saskatchewan, Canada, potash mine are analyzed and quantified. Specifically, the frequency-magnitude statistics display a rich behavior that deviates from the standard Gutenberg-Richter scaling for small magnitudes. To model the magnitude distribution, we consider two additional models, i.e., the tapered Pareto distribution and a mixture of the tapered Pareto and Pareto distributions to fit the bi-modal catalog data. To study the clustering aspects of the observed microseismicity, the nearest-neighbor distance (NND) method is applied. This allowed the identification of potential cluster characteristics in time, space, and magnitude domains. The implemented modeling approaches and obtained results will be used to further advance strategies and protocols for the safe and efficient operation of potash mines.
由于相关的岩体响应,预计钾肥开采中会出现微地震。这种现象是已知的,但尚未完全了解。为了评估采矿作业的安全性和效率,生产商必须定量区分正常和异常地震活动。在这项工作中,对加拿大萨斯喀彻温省钾盐矿微震的统计方面和聚类进行了分析和量化。具体而言,频率-震级统计数据显示了丰富的行为,偏离了小震级的标准古腾堡-里希特标度。为了对幅度分布进行建模,我们考虑了两个额外的模型,即锥形Pareto分布和锥形Pareto和Pareto分布的混合,以拟合双模目录数据。为了研究观测到的微震的聚类方面,应用了最近邻距离(NND)方法。这允许在时间、空间和幅度域中识别潜在的集群特征。所实施的建模方法和获得的结果将用于进一步推进钾盐矿安全高效运营的战略和协议。
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引用次数: 0
Ordering countries when managing COVID-19 在管理新冠肺炎时订购国家/地区
IF 1.4 Q3 MATHEMATICS, INTERDISCIPLINARY APPLICATIONS Pub Date : 2023-03-30 DOI: 10.3389/fams.2023.1083410
M. Cadena, M. Méndez
Here we assess countries' management of the coronavirus 2019 (COVID-19) pandemic using the reliability measure P(X ≤ Y). In this management, all kind of strategies as interventions deployed by governments as well individuals' initiatives to prevent, mitigate, and reduce the contagion of this disease are taken into account. Also, typical customs practiced locally and influencing contagion are included. Regarding a number of countries and rates associated to deaths and incidence, orderings of countries about such management are established, by using the measure of reliability indicated above. In this way, countries are distinguished from each other depending on how they managed this pandemic. This kind of analysis may be extended to the management of other diseases.
在这里,我们使用可靠性指标P(X≤Y)评估各国对2019冠状病毒病(新冠肺炎)大流行的管理。在这种管理中,政府部署的各种干预策略以及个人预防、缓解和减少这种疾病传染的举措都被考虑在内。此外,还包括当地习俗和影响传染的典型习俗。关于与死亡和发病率相关的一些国家和比率,通过使用上述可靠性指标,确定了各国关于此类管理的顺序。通过这种方式,各国之间的区别取决于它们如何应对这一流行病。这种分析可以推广到其他疾病的管理中。
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引用次数: 0
Boxing-in of a blender in a Hénon-like family 在一个类似hsamnon的家庭里装一个搅拌机
IF 1.4 Q3 MATHEMATICS, INTERDISCIPLINARY APPLICATIONS Pub Date : 2023-03-30 DOI: 10.3389/fams.2023.1086240
Stefanie Hittmeyer, B. Krauskopf, H. Osinga, Katsutoshi Shinohara
Introduction The extension of the Smale horseshoe construction for diffeomorphisms in the plane to those in spaces of at least dimension three may result in a hyperbolic invariant set referred to as a blender. The defining property of a blender is that it has a stable or unstable invariant manifold that appears to have a dimension larger than expected. In this study, we consider a Hénon-like family in ℝ3, which is the only explicitly given example of a system known to feature a blender in a certain range of a parameter (corresponding to an expansion or contraction rate). More specifically, as part of its hyperbolic set, this family has a pair of saddle fixed points with one-dimensional stable or unstable manifolds. When there is a blender, the closure of these manifolds cannot be avoided by one-dimensional curves coming from an appropriate direction. This property has been checked for the Hénon-like family by the method of computing extremely long pieces of global one-dimensional manifolds to determine the parameter range over which a blender exists. Methods In this study, we take the complimentary and local point of view of constructing an actual three-dimensional box (a parallelopiped) that acts as an outer cover of the hyperbolic set. The successive forward or backward images of this box form a nested sequence of sub-boxes that contains the hyperbolic set, as well as its respective local invariant manifold. Results This constitutes a three-dimensional horseshoe that, in contrast to the idealized affine construction, is quite general and features sub-boxes with curved edges. The initial box is defined in a parameter-dependent way, and this allows us to characterize properties of the hyperbolic set intuitively. Discussion In particular, we trace relevant edges of sub-boxes as a function of the parameter to provide additional geometric insight into when the hyperbolic set may or may not be a blender.
将平面上的微同态的小马蹄形构造扩展到至少三维空间中的微同态,可以得到一个称为混合的双曲不变量集。混合器的定义性质是它具有稳定或不稳定的不变量流形,其维数似乎比预期的要大。在本研究中,我们考虑了一个hsam非类族,它是已知系统在某一参数范围内(对应于膨胀率或收缩率)具有搅拌器特征的唯一明确给出的例子。更具体地说,作为它的双曲集的一部分,这个族有一对鞍形不动点,它们具有一维稳定或不稳定流形。当存在混合器时,这些流形的闭合不能通过来自适当方向的一维曲线来避免。通过计算极长的全局一维流形来确定搅拌机存在的参数范围的方法,对hsamnon -like族进行了这一性质的检查。方法在本研究中,我们采取互补和局部的观点,构建一个实际的三维盒子(平行六面体),作为双曲集的外层覆盖。该框的连续向前或向后图像形成了包含双曲集及其各自的局部不变流形的嵌套子框序列。结果这构成了一个三维马蹄形,与理想的仿射构造相反,它是相当普遍的,并且具有弯曲边缘的子盒。初始框以参数相关的方式定义,这使我们能够直观地表征双曲集的性质。特别是,我们跟踪子框的相关边作为参数的函数,以提供额外的几何洞察力,当双曲集可能是或可能不是一个混合。
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引用次数: 1
Artificial neural network scheme to solve the hepatitis B virus model 人工神经网络方案求解乙型肝炎病毒模型
IF 1.4 Q3 MATHEMATICS, INTERDISCIPLINARY APPLICATIONS Pub Date : 2023-03-30 DOI: 10.3389/fams.2023.1072447
Qusain Haider, A. Hassan, S. M. Eldin
This article aims to describe the simulation studies of the hepatitis B virus non-linear system using supervised neural networks procedures supported by Levenberg-Marquardt back propagation methodology. The proposed strategy has five distinct quantities: susceptible X(t), symptomatic infections Y(t), chronic infections W(t), recovered population R(t), and a population that has received vaccinations Z(t). The reference data set for all three distinct cases has been obtained utilizing the ND-Solver and Adams method in Mathematica software. The outcomes have been validated with performance plots for all cases. To check the accuracy and effectiveness of proposed methodology mean square error has are presented. State transition, and regression plots are illustrated to elaborated the testing, training, and validation methodology. Additionally, absolute errors for different components of hepatitis B virus model are demonstrated to depict the error occurring during distinct cases. Whereas the data assigned to training is 81%, and 9% for each testing and validation. The mean square error for all three cases is 10−12 this show the accuracy and correctness of proposed methodology.
本文旨在描述使用Levenberg-Marquardt反向传播方法支持的监督神经网络程序对乙型肝炎病毒非线性系统的模拟研究。所提出的策略有五个不同的数量:易感X(t)、有症状感染Y(t),慢性感染W(t)和康复人群R(t)以及已接种疫苗的人群Z(t)。利用Mathematica软件中的ND解算器和Adams方法获得了所有三种不同情况的参考数据集。结果已通过所有案例的性能图进行了验证。为了检验所提出方法的准确性和有效性,给出了均方误差。对状态转换和回归图进行了说明,详细阐述了测试、训练和验证方法。此外,还证明了乙型肝炎病毒模型不同成分的绝对误差,以描述不同病例中发生的误差。而分配给培训的数据为81%,每次测试和验证的数据为9%。三种情况的均方误差均为10-12,这表明了所提出方法的准确性和正确性。
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引用次数: 1
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Frontiers in Applied Mathematics and Statistics
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