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The International Trichinella Reference Centre database. Report on thirty-three years of activity and future perspectives 国际旋毛虫参考中心数据库。关于三十三年活动和未来展望的报告
IF 2.5 Q1 Immunology and Microbiology Pub Date : 2022-06-01 DOI: 10.1016/j.fawpar.2022.e00156
G. Marucci , D. Tonanzi , M. Interisano , P. Vatta , F. Galati , G. La Rosa

The International Trichinella Reference Centre (ITRC) is the official laboratory of the International Commission on Trichinellosis, of the World Organization for Animal Health and of the European Union Reference Laboratory for Parasites. The ITRC was established in 1988 as a repository of Trichinella strains and a source of reference materials and information for international scientific research. To date, more than 8000 Trichinella isolates collected throughout the world have been identified at the species or genotype level by the ITRC staff and the information has been stored in a freely accessible database providing the largest collection of data available for scientists involved in the systematics and epidemiology of this parasite. This paper presents a summary of the data collected over 33 years of activity and describes the database functionalities. It finally advocates the potential of the database to improve knowledge of the epidemiology and taxonomy of Trichinella, which in turn may help the international surveillance of Trichinella species.

国际旋毛虫参比中心是国际旋毛虫病委员会、世界动物卫生组织和欧洲联盟寄生虫参比实验室的官方实验室。国际旋毛虫研究中心成立于1988年,是旋毛虫菌株储存库和国际科学研究参考材料和信息的来源。迄今为止,ITRC工作人员已在物种或基因型水平上鉴定了世界各地收集的8000多株旋毛虫分离株,并将这些信息存储在一个可免费访问的数据库中,为参与这种寄生虫的系统学和流行病学的科学家提供了最大的数据集。本文概述了33年来收集的数据,并描述了数据库的功能。最后提出了该数据库在提高旋毛虫流行病学和分类知识方面的潜力,这反过来可能有助于旋毛虫物种的国际监测。
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引用次数: 3
A summary of cryptosporidiosis outbreaks reported in France and overseas departments, 2017–2020 2017-2020年法国和海外部门报告的隐孢子虫病疫情摘要
IF 2.5 Q1 Immunology and Microbiology Pub Date : 2022-06-01 DOI: 10.1016/j.fawpar.2022.e00160
Damien Costa , Romy Razakandrainibe , Louise Basmaciyan , Jérôme Raibaut , Pascal Delaunay , Florent Morio , Gilles Gargala , Venceslas Villier , Abdelmounaim Mouhajir , Bernard Levy , Catherine Rieder , Sébastien Larreche , Sophie Lesthelle , Noémie Coron , Estelle Menu , Magalie Demar , Vincent Pommier de Santi , Véronique Blanc , Stéphane Valot , Frédéric Dalle , Loic Favennec

Cryptosporidium is a known foodborne pathogen, ranked fifth out of 24 among foodborne parasites in terms of importance and a cause of many cryptosporidiosis outbreaks worldwide. In France, very few outbreaks were reported before 2017, and data recently obtained by the Expert Laboratory of the Cryptosporidiosis National Reference Center (CNR-LE-Cryptosporidiosis) have shown that outbreaks are in fact common and frequently underreported. In this work, we aim to report the characteristics of outbreaks detected in France during the period 2017–2020 and present a summary of investigations carried out by the CNR-LE-Cryptosporidiosis. During the study period, there were eleven cryptosporidiosis outbreaks, including three with no identified origin. Among the eight identified outbreaks: six were due to water contamination (five tap water and one recreational water), one was due to direct contact with infected calves, and one was due to consumption of contaminated curd cheese. Among these outbreaks, five of them exceeded one hundred cases. Recent results obtained by the CNR-LE-Cryptosporidiosis revealed the multiannual occurrence of Cryptosporidium outbreaks in France. Waterborne outbreaks were more frequently detected, while foodborne outbreaks which are more difficult to detect were likely underreported.

隐孢子虫是一种已知的食源性病原体,其重要性在24种食源性寄生虫中排名第五,是世界范围内许多隐孢子虫病暴发的原因。在法国,2017年之前报告的疫情很少,隐孢子虫病国家参考中心(cnr - le -隐孢子虫病)专家实验室最近获得的数据表明,疫情实际上很常见,而且经常被低估。在这项工作中,我们的目标是报告2017-2020年期间在法国发现的暴发特征,并提出cnr - le隐孢子虫病进行的调查总结。在研究期间,发生了11起隐孢子虫病暴发,其中3起未查明来源。在已确定的8起疫情中:6起是由于水污染(5起是自来水,1起是娱乐用水),1起是由于直接接触受感染的小牛,1起是由于食用受污染的凝乳奶酪。在这些疫情中,有5次病例超过100例。cnr - le隐孢子虫病最近获得的结果显示,法国隐孢子虫疫情多年发生。水传播的疫情更常被发现,而更难发现的食源性疫情可能被低估了。
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引用次数: 5
The impact of globalization and climate change on Trichinella spp. epidemiology 全球化和气候变化对旋毛虫流行病学的影响
IF 2.5 Q1 Immunology and Microbiology Pub Date : 2022-06-01 DOI: 10.1016/j.fawpar.2022.e00154
Edoardo Pozio

The main reservoir hosts of nematodes of the genus Trichinella are wild carnivores, although most human infections are caused by the consumption of pork. This group of zoonotic parasites completes the entire natural life cycle within the host organism. However, there is an important phase of the cycle that has only been highlighted in recent years and which concerns the permanence of the infecting larvae in the striated muscles of the host carcasses waiting to be ingested by a new host. To survive in this unique biological niche, Trichinella spp. larvae have developed an anaerobic metabolism for their survival in rotting carcasses and, for some species, a resistance to freezing for months or years in cold regions. Climate changes with increasingly temperatures and reduction of environmental humidity lower the survival time of larvae in host carcasses. In addition, environmental changes affect the biology and ecology of the main host species, reducing their number and age composition due to natural habitat fragmentation caused by increasing human settlements, extensive monocultures, increasing number of food animals, and reduction of trophic chains and biodiversity. All of these factors lead to a reduction in biological and environmental complexity that is the key to the natural host-parasite balance. In conclusion, Trichinella nematodes can be considered as an indicator of a health natural ecosystem.

旋毛虫属线虫的主要宿主是野生食肉动物,尽管大多数人类感染是由食用猪肉引起的。这组人畜共患寄生虫在宿主体内完成了整个自然生命周期。然而,这个循环中有一个重要的阶段是近年来才被强调的,它涉及到感染幼虫在宿主尸体的横纹肌中等待被新宿主摄入的持久性。为了在这种独特的生物生态位中生存,旋毛虫的幼虫已经发展出一种厌氧代谢,以便在腐烂的尸体中生存,对一些物种来说,它们在寒冷地区可以抵抗数月或数年的冷冻。气候变化,温度升高,环境湿度降低,降低了寄主尸体中幼虫的存活时间。此外,环境变化影响了主要寄主物种的生物学和生态学,由于人类住区的增加、广泛的单一栽培、食用动物数量的增加以及营养链和生物多样性的减少,导致自然栖息地破碎化,减少了它们的数量和年龄组成。所有这些因素导致生物和环境复杂性的降低,这是自然宿主-寄生虫平衡的关键。综上所述,旋毛虫线虫可以被认为是健康的自然生态系统的一个指标。
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引用次数: 7
Molecular detection of Toxoplasma gondii in chicken hearts from markets and retail stores in Northern Iran 伊朗北部市场和零售商店鸡心中刚地弓形虫的分子检测
IF 2.5 Q1 Immunology and Microbiology Pub Date : 2022-06-01 DOI: 10.1016/j.fawpar.2022.e00166
Somayeh Abbaszadeh , Aref Teimouri , Mohammad Reza Mahmoudi , Zahra Atrkar Roushan , Nayereh Hajipour , Bijan Majidi-Shad , Meysam Sharifdini

Detection of Toxoplasma gondii in chicken products indicates risk of transmission to consumers. The objective of the current study was to investigate the molecular prevalence of T. gondii in free-ranging and industrial chickens in Guilan province, Northern Iran. A total of 150 chicken heart samples including 75 free-range and 75 industrial chickens were collected from farmers' markets and chicken retailers in Guilan, Northern Iran, between October 2017 and August 2018. Genomic DNA were extracted from samples and examined for evidence of T. gondii using polymerase chain reaction (PCR) targeting the B1 gene. The B1-positive samples were further analyzed by nested-PCR for SAG1 gene. Of the 150 samples, T. gondii DNA fragments were detected in 59 (39.3%), including 30 (40%) free-range and 29 (38.7%) industrial chicken. No significant differences of T. gondii DNA detection was observed between the free-range and industrial chicken samples (p = 0.73). Four selected positive samples were used for amplifying and sequencing of the SAG1 gene. The results revealed that all four sequences of SAG1 had 100% similarity with T. gondii sequences previously isolated from an AIDS/HIV patient in Mazandaran province, Northern Iran. Furthermore, the phylogenetic analysis demonstrated that all four sequences were closely related to Type I of T. gondii. However, our Type I identification is preliminary and needs to be confirmed by further multilocus sequence typing (MLST) analysis. The findings of the present study provide new data about the presence of T. gondii DNA in chicken hearts in the study area. These results confirm that chicken can be used as sentinels for environment contamination; however, further studies are needed to determine the viability of T. gondii in chicken hearts from Iran for risk assessment.

在鸡肉产品中检测到刚地弓形虫,表明有传播给消费者的风险。本研究的目的是调查伊朗北部桂兰省散养鸡和工业鸡中弓形虫的分子流行情况。2017年10月至2018年8月期间,研究人员从伊朗北部桂兰的农贸市场和鸡肉零售商收集了150只鸡心脏样本,其中包括75只散养鸡和75只工业鸡。从样本中提取基因组DNA,并使用靶向B1基因的聚合酶链反应(PCR)检测弓形虫的证据。b1阳性标本进一步采用巢式pcr检测SAG1基因。150份样本中检出弓形虫DNA片段59份(39.3%),其中散养鸡30份(40%),工业鸡29份(38.7%)。散养鸡和工业鸡的弓形虫DNA检测差异无统计学意义(p = 0.73)。选取4个阳性样本对SAG1基因进行扩增和测序。结果显示,SAG1的所有4个序列与先前从伊朗北部Mazandaran省的一名艾滋病/HIV患者中分离的弓形虫序列具有100%的相似性。系统发育分析表明,这4个序列均与弓形虫ⅰ型亲缘关系密切。然而,我们的I型鉴定是初步的,需要进一步的多位点序列分型(MLST)分析来证实。本研究结果为研究区鸡心脏中弓形虫DNA的存在提供了新的数据。这些结果证实了鸡可以作为环境污染的哨兵;然而,需要进一步的研究来确定伊朗鸡心脏中弓形虫的生存能力,以进行风险评估。
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引用次数: 0
Cyst detection and viability assessment of Balantioides coli in environmental samples: Current status and future needs 环境样品中大肠Balantioides的囊肿检测和活力评估:现状和未来需求
IF 2.5 Q1 Immunology and Microbiology Pub Date : 2022-03-01 DOI: 10.1016/j.fawpar.2021.e00143
Juan José García-Rodríguez , Pamela C. Köster , Francisco Ponce-Gordo

The ciliate Balantioides coli is a human enteric parasite that can cause life-threatening infections. It is a food- and waterborne parasite, with cysts being the infective stage. Despite its importance as a potential pathogen, few reports have investigated its presence in environmental samples, and some issues need attention including i) The accuracy of B. coli identification. In most cases, the protozoa is identified only by its morphological traits, which can be identical to those from other parasitic ciliates of animals. Genetic analysis of cysts recovered from environmental samples is necessary for species confirmation. In addition, genetic methods used with faecal samples need to be adequately validated with environmental matrices. ii) The methodology for searching this parasite in environmental samples. The protocols include an initial phase to isolate the cysts from the matrix followed by a second phase in which concentration procedures are usually applied. The methods may be valid but are not standardised and differences between studies could affect the results obtained. iii) The areas that needs further research. The development of genetic identification methods and standardised analytical protocols in environmental samples are required, as well as the assessment of viability and infectivity of B. coli cysts. The development of axenic culture systems will boost research on this parasite.

纤毛虫大肠杆菌是一种人类肠道寄生虫,可引起危及生命的感染。它是一种通过食物和水传播的寄生虫,在感染阶段出现囊肿。尽管它作为一种潜在的病原体具有重要意义,但很少有报道调查其在环境样品中的存在,并且需要注意一些问题,包括i)大肠杆菌鉴定的准确性。在大多数情况下,原生动物只能通过其形态特征来识别,这些特征可以与其他动物的寄生纤毛虫相同。从环境样本中回收的囊肿进行遗传分析对于物种确认是必要的。此外,用于粪便样本的遗传方法需要在环境基质中得到充分验证。ii)在环境样本中寻找该寄生虫的方法。该方案包括初始阶段,将囊肿从基质中分离出来,然后是第二阶段,其中通常应用浓缩程序。这些方法可能是有效的,但没有标准化,研究之间的差异可能会影响得到的结果。(三)需要进一步研究的领域。需要在环境样本中开发遗传鉴定方法和标准化分析方案,以及评估大肠杆菌囊肿的生存能力和传染性。无菌培养系统的发展将促进对这种寄生虫的研究。
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引用次数: 3
Investigation of the effect of the calcium channel blocker, verapamil, on the parasite burden, inflammatory response and angiogenesis in experimental Trichinella spiralis infection in mice 钙通道阻滞剂维拉帕米对实验性旋毛虫感染小鼠寄生虫负荷、炎症反应和血管生成的影响
IF 2.5 Q1 Immunology and Microbiology Pub Date : 2022-03-01 DOI: 10.1016/j.fawpar.2022.e00144
Khadyga Hussein Abdel Fadil , Eman Mohammed Mahmoud , Saedia Abdel Hady Sayed El-Ahl , Amany Ahmed Abd-Elaal , Amal Abdel-Aziz M. El-Shafaey , Mohammed Sharaf El Din Zaky Badr , Yasmine Fathy Elesawy , Amal M. Mahfoz , Alshaimaa Mohamed Raafat Hamed , Iman Raafat Abdel-Shafi , Ahmed M. Reda , Mohamed Diefallah Abdelmoneim Elsayed , Magda Said Ahmed Abdeltawab

Trichinella spiralis larvae have very special characters that make them able to completely transform the function of the affected muscle cells towards a self-serving environment, offering them nourishment and protection via what is known as “nurse cells”. This setting may be affected by drugs that are used for the treatment of co-morbidities and co-infections as calcium channel blockers, which are widely used in clinical practice. In the present study, the effects of verapamil, ivermectin (IVM), and their combined administration on the parasitic burden, immuno-pathology and angiogenesis were investigated during experimental trichinellosis. Estimation of intestinal adult parasitic stages and muscle larvae was done. VEGF gene expression and CD31 immunohistochemical local expression were measured to investigate angiogenesis, in addition to histopathological examination to explore the extent of inflammation. Although verapamil did not have an effect on the adult worm count during the intestinal phase, it induced an anti-inflammatory effect on intestinal pathology. During the muscle phase, it was very effective in reducing the larval count by 93.78%. IVM effectively reduced the worm count by 85.34%, and the muscle larval count by 97.84%, while combined verapamil and IVM administration resulted in a significant reduction in both adult parasites by 69.5% and larval stages by 99%. Both verapamil and IVM and their combination induced a potent decrease in local CD31 protein expression and VEGF gene expression. The important role of calcium and calcium channels during the pathology of trichinellosis, in addition to the pivotal role of calcium on biological processes such as immunity and angiogenesis, make calcium-channel blockers promising candidates for drug repurposing in the management of helminthic infection.

旋毛虫幼虫具有非常特殊的特性,使它们能够完全将受影响的肌肉细胞的功能转变为一个自我服务的环境,通过所谓的“护理细胞”为它们提供营养和保护。这种情况可能会受到用于治疗合并症和合并症感染的药物的影响,如钙通道阻滞剂,这些药物在临床实践中广泛使用。在本研究中,研究维拉帕米和伊维菌素(IVM)及其联合给药对实验性旋毛虫病的寄生负荷、免疫病理和血管生成的影响。对肠道成虫寄生期和肌肉幼虫进行了估计。检测血管内皮生长因子(VEGF)基因表达和CD31免疫组化局部表达,观察血管新生情况,并进行组织病理学检查,观察炎症程度。尽管维拉帕米对肠道期成虫数量没有影响,但它对肠道病理有抗炎作用。在肌肉期,可有效减少幼虫数93.78%。IVM可有效减少虫数85.34%,肌肉幼虫数97.84%,维拉帕米和IVM联合施用可显著减少成虫69.5%和幼虫期99%。维拉帕米和IVM及其联合用药均可显著降低局部CD31蛋白表达和VEGF基因表达。钙和钙通道在旋毛虫病病理过程中的重要作用,以及钙在免疫和血管生成等生物过程中的关键作用,使钙通道阻滞剂成为治疗寄生虫感染药物再利用的有希望的候选药物。
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引用次数: 2
Editorial Board Page 编委会页面
IF 2.5 Q1 Immunology and Microbiology Pub Date : 2022-03-01 DOI: 10.1016/S2405-6766(22)00006-3
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引用次数: 0
Parasites of zoonotic interest in selected edible freshwater fish imported to Australia 在进口至澳洲的精选食用淡水鱼中发现的人畜共患寄生虫
IF 2.5 Q1 Immunology and Microbiology Pub Date : 2022-03-01 DOI: 10.1016/j.fawpar.2021.e00138
Michelle Williams, Marta Hernandez-Jover, Shokoofeh Shamsi

Australia imports a significant amount of edible freshwater fish. The safety of the imported product is therefore of great importance. Previous research has shown that certain types of edible freshwater fish imported into Australia are not compliant with Australian importation guidelines and additionally are contaminated with many species of parasites, some of which may cause illness in humans if consumed. The present study, to the best of authors knowledge, is the first to publish the occurrence of zoonotic parasites in edible fish imported into Australia. Eustrongylides sp. Jägerskiöld, 1909 (P. 15.5%), family Dioctophymidae; Euclinostomum sp. Travassos, 1928 (P. 4.8%), family Clinostomidae, were recovered from imported edible and consumer ready Channidae fish and Isoparorchis sp. Southwell, 1913 (P. 11%), family Isoparorchiidae, from imported edible Bagridae fish. Euclinostomum sp. and Isoparorchis sp. were identified using morphological method. Molecular identification of Eustrongylides sp. was achieved through sequencing of the 18S ribosomal RNA gene sequence. Eustrongylides sp. and Isoparorchis sp. have been identified as the causative agent in cases of human infection and are a recognised zoonosis. Euclinostomum sp. is considered to have zoonotic potential and for this reason this species has been included in the importation risk assessments for freshwater fish from certain countries. This study confirmed the presence of zoonotic parasite species in edible imported fish. Whilst this fish product was frozen and parasites therefore inactivated, both fish species according to importation commodity codes, at the time this manuscript was written, are permitted entry into Australia chilled. Further study using a greater sample size is required to understand the human health risks.

澳大利亚进口大量可食用淡水鱼。因此,进口产品的安全性非常重要。先前的研究表明,进口到澳大利亚的某些可食用淡水鱼不符合澳大利亚的进口指南,而且还被许多种类的寄生虫污染,其中一些寄生虫如果食用可能会导致人类生病。据作者所知,目前的研究是首次发表进口到澳大利亚的食用鱼中出现人畜共患寄生虫的研究。Eustrongylides sp. Jägerskiöld, 1909 (P. 15.5%),双章鱼科;Euclinostomum sp. Travassos, 1928 (P. 4.8%), Clinostomidae科,从进口食用鱼和食用鱼中分离得到;Isoparorchis sp. Southwell, 1913 (P. 11%), Isoparorchiidae科,从进口食用鱼中分离得到。用形态学方法鉴定了Euclinostomum sp.和Isoparorchis sp.。Eustrongylides sp.的分子鉴定是通过18S核糖体RNA基因序列测序实现的。已确定在人感染病例中,正圆内酯类和等细螺旋体是病原体,并且是公认的人畜共患病。Euclinostomum sp.被认为具有人畜共患的潜力,因此已将该物种列入某些国家淡水鱼的进口风险评估。本研究证实进口食用鱼类中存在人畜共患寄生虫。虽然这种鱼产品是冷冻的,因此寄生虫是灭活的,但在撰写本手稿时,根据进口商品代码,这两种鱼都允许冷藏进入澳大利亚。需要使用更大的样本量进行进一步研究,以了解人类健康风险。
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引用次数: 11
Diagnostic tools for the detection of taeniid eggs in different environmental matrices: A systematic review. 在不同环境基质中检测带绦虫卵的诊断工具:系统综述。
IF 2.5 Q1 Immunology and Microbiology Pub Date : 2022-03-01 DOI: 10.1016/j.fawpar.2022.e00145
Ganna Saelens , Lucy Robertson , Sarah Gabriël

The cestode family Taeniidae consists of the genera Echinococcus and Taenia, both of which include zoonotic tapeworms of serious public health importance. Various environmental matrices have been identified from which parasite transmission to animals and humans can occur, and many techniques for detecting taeniid eggs in different environments have been developed. However, the majority lack appropriate validation, and standardized egg isolation procedures are absent. This hampers interstudy comparisons and poses a challenge for future researchers when deciding which technique to implement for assessing taeniid egg contamination in a particular matrix. Therefore, the aim of this systematic review was to present an overview of the detection methods for taeniid eggs in the environment, to discuss and compare them, and to provide recommendations for future studies. In total, 1814 publications were retrieved from scientific databases, and, ultimately, data were systematically reviewed from 90 papers. The results provide an overview of numerous diagnostic tests for taeniid egg detection in (or on) water, food, soil, insects, objects, and air. These tools could be categorized as either conventional (light microscopy), molecular, or immunodetection tools. The relatively cheap microscopy techniques often lack sensitivity and are unable to identify a taeniid egg at the genus level. Nevertheless, several records ascribed a genus, or even species, to taeniid eggs that had been detected by light microscopy. Molecular and immunodetection tools offer better specificity, but still rely on the preceding egg recovery steps that also affect overall sensitivity. Finally, the majority of the methods lacked any attempt at performance evaluation and standardization, especially at the earlier stages of the analysis (e.g., sampling strategy, storage conditions, egg recovery), and viability was rarely addressed. As such, our review highlights the need for standardized, validated detection tools, that not only assess the extent of environmental contamination, but also the egg genus or species, and address viability.

绦虫科由棘球绦虫属和带绦虫属组成,两者都包括具有严重公共卫生重要性的人畜共患绦虫。已经确定了各种环境基质,寄生虫可以从这些环境基质中传播到动物和人类,并且已经开发了许多在不同环境中检测带绦虫卵的技术。然而,大多数缺乏适当的验证,并且缺乏标准化的卵子分离程序。这阻碍了研究间的比较,并对未来的研究人员在决定采用哪种技术来评估特定基质中的带绦虫卵污染提出了挑战。因此,本文旨在对环境中带绦虫卵的检测方法进行综述,并对其进行讨论和比较,为今后的研究提供建议。总共从科学数据库中检索了1814份出版物,最终系统地审查了90篇论文的数据。研究结果概述了在水、食物、土壤、昆虫、物体和空气中检测带绦虫卵的众多诊断试验。这些工具可分为常规(光学显微镜)、分子或免疫检测工具。相对便宜的显微镜技术往往缺乏灵敏度,无法在属水平上识别带绦虫卵。尽管如此,一些记录将通过光学显微镜检测到的带绦虫卵归为一个属,甚至种。分子和免疫检测工具提供了更好的特异性,但仍然依赖于之前的卵子恢复步骤,这也会影响总体敏感性。最后,大多数方法缺乏对性能评估和标准化的任何尝试,特别是在分析的早期阶段(例如,取样策略,储存条件,卵子回收),并且很少涉及活力。因此,我们的综述强调需要标准化的、经过验证的检测工具,不仅要评估环境污染的程度,还要评估鸡蛋的属或种,并解决生存能力问题。
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引用次数: 6
Use of metagenomic microbial source tracking to investigate the source of a foodborne outbreak of cryptosporidiosis 利用宏基因组微生物源追踪调查隐孢子虫病食源性暴发的来源
IF 2.5 Q1 Immunology and Microbiology Pub Date : 2022-03-01 DOI: 10.1016/j.fawpar.2021.e00142
J. Ahlinder , A.-L. Svedberg , A. Nystedt , R. Dryselius , K. Jacobsson , M. Hägglund , B. Brindefalk , M. Forsman , J. Ottoson , K. Troell

Cryptosporidium is a protozoan parasite of global public health importance that causes gastroenteritis in a variety of vertebrate hosts, with many human outbreaks reported yearly, often from ingestion of contaminated water or food. Despite the major public health implications, little is typically known about sources of contamination of disease outbreaks caused by Cryptosporidium. Here, we study a national foodborne outbreak resulted from infection with Cryptosporidium parvum via romaine lettuce, with the main goal to trace the source of the parasite. To do so, we combined traditional outbreak investigation methods with molecular detection and characterization methods (i.e. PCR based typing, amplicon and shotgun sequencing) of romaine lettuce samples collected at the same farm from which the contaminated food was produced. Using 18S rRNA typing, we detected C. parvum in two out of three lettuce samples, which was supported by detections in the metagenome analysis. Microbial source tracking analysis of the lettuce samples suggested sewage water as a likely source of the contamination, albeit with some uncertainty. In addition, the high degree of overlap in bacterial species content with a public human gut microbial database corroborated the source tracking results. The combination of traditional and molecular based methods applied here is a promising tool for future source tracking investigations of food- and waterborne outbreaks of Cryptosporidium spp. and can help to control and mitigate contamination risks.

隐孢子虫是一种具有全球公共卫生重要性的原生动物寄生虫,可在多种脊椎动物宿主中引起肠胃炎,每年报告许多人类暴发,通常是由于摄入受污染的水或食物。尽管隐孢子虫对公共卫生有重大影响,但人们通常对隐孢子虫引起的疾病暴发的污染源知之甚少。在这里,我们研究了由长叶莴苣感染小隐孢子虫引起的全国性食源性暴发,主要目的是追踪寄生虫的来源。为此,我们将传统的疫情调查方法与分子检测和表征方法(即基于PCR的分型、扩增子和鸟枪法测序)结合起来,对生产受污染食品的同一农场收集的长叶莴苣样本进行分析。利用18S rRNA分型,我们在3份生菜样品中的2份中检测到细小梭菌,这与元基因组分析的检测结果一致。生菜样品的微生物源跟踪分析表明,污水可能是污染源,尽管存在一些不确定性。此外,细菌种类含量与公共人类肠道微生物数据库的高度重叠证实了来源跟踪结果。本文采用的传统方法和分子方法相结合的方法是一种很有前途的工具,可用于未来食物和水传播隐孢子虫暴发的来源追踪调查,并有助于控制和减轻污染风险。
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引用次数: 3
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Food and Waterborne Parasitology
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