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A new species of Pangora Moore 1879 (Lepidoptera: Erebidae) from India based on DNA barcoding and internal genitalia 基于 DNA 条形码和内生殖器的印度 Pangora Moore 1879(鳞翅目:Erebidae)新种
IF 0.6 Q4 BIODIVERSITY CONSERVATION Pub Date : 2024-06-03 DOI: 10.1016/j.japb.2024.04.002

The genus Pangora Moore (1879) is endemic to south Asia, with four known species distributed in India, Sri Lanka, and Nepal. The current study offers the scientific community the first mitochondrial genome sequence of the known species Pangora matherana (Moore). The phenotypic and phylogenetic tree analysis reveals a new species, Pangora keralaensis Abhilash & Adarsh sp. nov., from India. The male genitalia and morphological analysis of the new taxa are also provided. A preliminary phylogenetic tree based on the mt COI DNA sequence is also provided for the new species and the known species, Pangora matherana (Moore, 1879).

Pangora Moore(1879 年)属是南亚的特有种,已知的四个物种分布在印度、斯里兰卡和尼泊尔。本研究为科学界提供了已知物种 Pangora matherana (Moore) 的首个线粒体基因组序列。表型和系统发生树分析揭示了一个来自印度的新物种--Pangora keralaensis Abhilash & Adarsh sp.报告还提供了新类群的雄性生殖器和形态分析。此外,还提供了基于 mt COI DNA 序列的新种与已知种 Pangora matherana (Moore, 1879) 的初步系统发生树。
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引用次数: 0
Characterization of the plastid and mitochondrial genomes of Aeschynomene indica (Fabaceae) Aeschynomene indica(豆科植物)质粒和线粒体基因组的特征描述
IF 0.8 Q3 Agricultural and Biological Sciences Pub Date : 2024-06-01 DOI: 10.1016/j.japb.2024.05.001
In-Su Cho
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引用次数: 0
Live owls in Japanese pet stores and cafés: Volumes, species, and impediments to effective trade monitoring 日本宠物店和咖啡馆里的活猫头鹰:数量、种类和有效贸易监测的障碍
IF 0.6 Q4 BIODIVERSITY CONSERVATION Pub Date : 2024-05-24 DOI: 10.1016/j.japb.2024.03.006

Owls are popular pets in Japan, with the country being the largest importer of live owls in the world. Although several studies have looked at the welfare implications of the country's “owl cafés,” the scale and scope of the Japanese owl trade, and its potential consequences for conservation, remain largely unexplored. Here we present an overview of the volumes and species of owl found in a selection of Japanese pet stores and cafés, based on two physical surveys, an online survey, and an analysis of CITES import data. We found a high number of owls (n = 1914) from a large variety of species (n = 49) across a total of 92 establishments. CITES import records show that species variety has highly increased over time. Although the majority of owls in Japanese pet stores and cafés are likely to be of captive-bred origin, trade histories are often difficult to trace, and the legality of parent stock is impossible to determine. Further complicating monitoring efforts are gaps in international trade data, the mislabeling of species, selective breeding, and the use of outdated taxonomy. Considering the large scale of the Japanese market, efforts to facilitate the improved monitoring of the owl trade are highly warranted to ensure its legality and sustainability.

猫头鹰是日本人喜爱的宠物,日本是世界上最大的活体猫头鹰进口国。虽然有几项研究探讨了日本 "猫头鹰咖啡馆 "对动物福利的影响,但日本猫头鹰贸易的规模和范围及其对动物保护的潜在影响在很大程度上仍未得到探讨。在此,我们根据两次实际调查、一次在线调查以及对《濒危野生动植物种国际贸易公约》(CITES)进口数据的分析,概述了在部分日本宠物店和咖啡馆中发现的猫头鹰数量和种类。我们在总共 92 家宠物店中发现了大量猫头鹰(n = 1914),种类繁多(n = 49)。CITES 进口记录显示,随着时间的推移,物种种类在大幅增加。尽管日本宠物店和咖啡馆中的大多数猫头鹰可能是人工饲养的,但贸易历史往往难以追踪,而且无法确定亲本的合法性。国际贸易数据的缺失、物种标签的错误、选择性繁殖以及使用过时的分类方法,都使监测工作变得更加复杂。考虑到日本市场的巨大规模,为确保猫头鹰贸易的合法性和可持续性,必须努力促进对猫头鹰贸易的更好监测。
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引用次数: 0
The mitochondrial genome of a carnivorous lucanid, Figulus punctatus Waterhouse, 1873 (Coleoptera: Lucanidae) 食肉晰蜴--Figulus punctatus Waterhouse, 1873(鞘翅目:晰蜴科)的线粒体基因组
IF 0.6 Q4 BIODIVERSITY CONSERVATION Pub Date : 2024-05-22 DOI: 10.1016/j.japb.2024.03.007

This study represents the first report of the complete mitochondrial genome of a carnivorous stag beetle, Figulus punctatus. The genome is 17,664 bp long with a total of 37 genes including 13 protein-coding genes, 22 tRNA, and 2 rRNA. The nucleotide composition is 37.25% A, 31.71% T, 10.00% G, and 20.99% C (GC contents 30.99%). Our molecular phylogenetic analysis based on the maximum-likelihood method recognizes Figulini and Nigidiini as a monophyletic clade, with a robust support value, and suggests that their carnivorous feeding trait may have evolved once within the family.

本研究首次报道了食肉锹形虫(Figulus punctatus)的完整线粒体基因组。该基因组长 17,664 bp,共有 37 个基因,包括 13 个蛋白质编码基因、22 个 tRNA 和 2 个 rRNA。核苷酸组成为 37.25% A、31.71% T、10.00% G 和 20.99% C(GC 含量为 30.99%)。我们基于最大似然法进行的分子系统进化分析表明,Figulini 和 Nigidiini 是一个单系支系,支持度很高,这表明它们的肉食性食性可能是在科内进化而来的。
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引用次数: 0
Complete chloroplast genome sequences of Dracocephalum argunense and D. integrifolium (Lamiaceae: Nepetinae) Dracocephalum argunense 和 D. integrifolium 的完整叶绿体基因组序列(Lamiaceae: Nepetinae)
IF 0.6 Q4 BIODIVERSITY CONSERVATION Pub Date : 2024-05-21 DOI: 10.1016/j.japb.2024.04.001

Dracocephalum is a large genus comprises approximately 80 species of perennial herbs, mainly distributed in high elevation regions of temperate and Central Asia, with about half native to China. Within the genus, D. argunense and D. integrifolium are important herbs with great medicinal value. We sequenced plastomes of these two species for the first time. These plastomes showed a typical quadripartite structure and the length varied from 149,978 bp (D. integrifolium) to 150,802 bp (D. argunense). Plastomes of D. argunense and D. integrifolium included 127 and 133 genes, respectively. Phylogenetic analyses supported the monophyly of the redefined Dracocephalum and systematic relationships within the sampled species were well resolved. Our study added new genetic information about D. argunense and D. integrifolium and has great potential for further diversity studies, phylogenetic studies, and understanding of evolutionary history in Dracocephalum.

龙脑香属是一个很大的属,由大约 80 种多年生草本植物组成,主要分布在温带和中亚的高海拔地区,其中大约一半原产于中国。在该属中,D. argunense 和 D. integrifolium 是具有重要药用价值的草本植物。我们首次对这两个物种的质粒进行了测序。这些质粒表现出典型的四方结构,长度从149 978 bp(D. integrifolium)到150 802 bp(D. argunense)不等。argunense 和 D. integrifolium 的质粒分别包括 127 和 133 个基因。系统发育分析支持重新定义的龙脑香的单系性,取样物种内部的系统关系也得到了很好的解决。我们的研究为 D. argunense 和 D. integrifolium 增添了新的遗传信息,对进一步开展多样性研究、系统发育研究以及了解龙脑香的进化历史具有巨大潜力。
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引用次数: 0
The complete chloroplast genome and characteristics analysis of Lonicera harae (Caprifoliaceae) 香叶忍冬的完整叶绿体基因组及其特征分析
IF 0.6 Q4 BIODIVERSITY CONSERVATION Pub Date : 2024-05-20 DOI: 10.1016/j.japb.2024.03.005

Herein, we determined and analyzed the chloroplast (cp) genome sequence of Lonicera harae for the first time. The chloroplast genome was 154,959 bp and contained a large single copy (LSC) of approximately 88,849 bp as well as a small single copy (SSC) of 18,832 bp separated by a pair of 23,639 bp inverted repeats (IRs). The overall G+C content in the L. harae chloroplast genome was 38.4%. A total of 114 unique genes were annotated, comprising 80 protein-coding genes (PCGs), 30 transfer RNAs (tRNAs), and four ribosomal RNAs (rRNAs). Of these, 17 contained one or two introns. Phylogenetic analysis of 54 accessions revealed that L. harae forms a clade with L. fragrantissima. This newly sequenced chloroplast genome provides valuable molecular phylogenomic information for future studies to determine the taxonomic position of L. harae and the phylogenetic relationships within the genus Lonicera.

在此,我们首次测定并分析了忍冬的叶绿体(cp)基因组序列。叶绿体基因组为 154,959 bp,包含一个约 88,849 bp 的大单个拷贝(LSC)和一个 18,832 bp 的小单个拷贝(SSC),由一对 23,639 bp 的倒位重复(IR)隔开。L. harae叶绿体基因组的总体 G+C 含量为 38.4%。共注释了 114 个独特基因,包括 80 个蛋白质编码基因 (PCG)、30 个转运 RNA (tRNA) 和 4 个核糖体 RNA (rRNA)。其中,17 个基因含有一个或两个内含子。对 54 个样本的系统进化分析表明,L. harae 与 L. fragrantissima 构成一个支系。这一新测序的叶绿体基因组为今后的研究提供了宝贵的分子系统发生组学信息,有助于确定 L. harae 在忍冬属中的分类地位和系统发生关系。
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引用次数: 0
A new species of the cleptoparasitic genus Sphecodes (Hymenoptera: Halictidae) with an updated checklist and new geographical records from India 来自印度的裂殖寄生属 Sphecodes(膜翅目:Halictidae)的一个新种,附带更新的核对表和新的地理记录
IF 0.6 Q4 BIODIVERSITY CONSERVATION Pub Date : 2024-05-17 DOI: 10.1016/j.japb.2023.12.015

A new species of the genus Sphecodes, i.e. Sphecodes solanensis sp. nov. is described from India. Also, two species of the genus, namely Sphecodes binghami Blüthgen 1924 and Sphecodes hakkarensis Warncke 1992 are recorded for the first time from India. An annotated checklist with valid names of the genus, synonyms, and seven new regional records within India is also included.

描述了来自印度的 Sphecodes 属的一个新种,即 Sphecodes solanensis sp.此外,首次从印度记录到该属的两个种,即 Sphecodes binghami Blüthgen 1924 和 Sphecodes hakkarensis Warncke 1992。此外,还包括一份附有注释的核对表,其中列出了该属的有效名称、异名以及印度的七个新地区记录。
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引用次数: 0
Unraveling the phylogenetic position of a Korean endemic species Indigofera koreana (Fabaceae) through plastid genome analysis 通过质粒基因组分析揭示韩国特有物种 Indigofera koreana(豆科)的系统发育位置
IF 0.6 Q4 BIODIVERSITY CONSERVATION Pub Date : 2024-05-17 DOI: 10.1016/j.japb.2024.03.004

Indigofera koreana is an endemic species to Korea, yet its phylogenetic position remains unresolved. In this study, we sequenced and analyzed plastid genomes (plastomes) to clarify the phylogenetic standing of I. koreana. We produced next-generation sequencing data for I. koreana and its close relative, Indigofera kirilowii. The plastomes of both species were successfully assembled, measuring 159,517 bp for I. kirilowii and 159,459 bp for I. koreana. Both species shared the same number of 128 intact genes and had identical 35.7% guanine–cytosine content. Phylogenetic analyses utilizing complete plastome and coding sequence–only data, along with 20 other Indigofera plastomes, were conducted to elucidate their evolutionary relationships. Our findings indicate that I. koreana forms a monophyletic group with Indigofera decora, Indigofera carlesii, and I. kirilowii, supported by maximum bootstrap values. Specifically, the phylogenetic tree derived from complete plastome data strongly suggests that I. koreana is most closely related to I. kirilowii. While these results are in line with previously suggested infra-generic classifications, they highlight the need for more comprehensive genomic studies to further unravel the evolutionary dynamics within the Indigofera genus, especially considering the role of polyploidization in species diversification.

Indigofera koreana是韩国的特有物种,但其系统发育地位仍未确定。在这项研究中,我们对质体基因组(质体)进行了测序和分析,以明确韩国茵蒂果的系统发育地位。我们获得了 I. koreana 及其近亲 Indigofera kirilowii 的新一代测序数据。两个物种的质粒都已成功组装,I. kirilowii 的质粒为 159,517 bp,I. koreana 的质粒为 159,459 bp。两个物种共享相同数量的 128 个完整基因,并且具有相同的 35.7% 的鸟嘌呤-胞嘧啶含量。我们利用完整的质粒和纯编码序列数据,以及其他 20 个 Indigofera 质粒进行了系统进化分析,以阐明它们之间的进化关系。我们的研究结果表明,I. koreana 与 Indigofera decora、I. Indigofera carlesii 和 I. kirilowii 构成一个单系群,并得到最大引导值的支持。kirilowii 的亲缘关系最为密切。虽然这些结果与之前提出的下属分类一致,但它们强调了进行更全面的基因组研究以进一步揭示 Indigofera 属内部进化动态的必要性,特别是考虑到多倍体化在物种多样化中的作用。
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引用次数: 0
Two rove beetle species (Coleoptera: Staphylinidae) new to the Korean fauna 韩国动物群中新发现的两种锹形虫(鞘翅目:锹形科
IF 0.6 Q4 BIODIVERSITY CONSERVATION Pub Date : 2024-05-17 DOI: 10.1016/j.japb.2024.03.003

A taxonomic study of two Korean staphylinid species is presented. Baeocera satana Nakane is identified for the first time in the Korean Peninsula and diagnosed with illustrations of its diagnostic characters. Dalotia coriaria (Kraatz) is newly discovered in South Korea and is redescribed with illustrations of its diagnostic characters.

本文介绍了对两种朝鲜石龙子的分类研究。Baeocera satana Nakane 是首次在朝鲜半岛被鉴定出来,并附有诊断特征插图。Dalotia coriaria (Kraatz)是在韩国新发现的,该物种被重新描述,并附有其诊断特征的插图。
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引用次数: 0
Assessing the potential invasive range of Trichonephila clavata using species distribution models 利用物种分布模型评估克拉维拉毛蛛的潜在入侵范围
IF 0.6 Q4 BIODIVERSITY CONSERVATION Pub Date : 2024-04-26 DOI: 10.1016/j.japb.2024.02.003
Joseph Giulian, Thomas C. Jones, Darrell Moore

Since its establishment in North America around 2013, the east-Asian spider Trichonephila clavata has expanded its range to 120,000 km2. We used ‘MaxEnt’ species distribution models (SDMs) to assess the potential range and invasive process of T. clavata based on its climatic niche preferences. Results reveal T. clavata exhibits a preference for climatic niches between subtropical and temperate latitudes, with high suitability primarily forecasted in montane forests and coastal regions spanning latitudes of 30–50 degrees. Geographic projections indicate high risk of expansion beyond the current invasive range. Areas with over 50% suitability are predicted as far north as 45–50° N, reaching into southern Canada, while the southern extent approaches the Gulf Coast. Response curves show peak suitability occurs at below-freezing temperatures for the minimum temperature of the coldest month. Similar drivers of distribution between native and invasive models, and an invasive niche occurring within the native range, each suggest niche conservatism for invasive populations. Overall, the vast regions of climatically suitable habitat predicted in North America indicates a highly permissive climate, highlighting the need for further research on biotic factors and management strategies to mitigate spread and impacts.

自2013年左右进入北美以来,东亚蜘蛛Trichonephila clavata的分布范围已扩大到12万平方公里。我们使用 "MaxEnt "物种分布模型(SDMs),根据其气候生态位偏好来评估克拉瓦塔蜘蛛的潜在分布范围和入侵过程。结果表明,T. clavata 对亚热带和温带纬度之间的气候生态位有偏好,预测其主要在纬度为 30-50 度的山地森林和沿海地区具有较高的适宜性。地理预测表明,该物种极有可能扩展到目前的入侵范围之外。据预测,适宜度超过 50% 的地区最北可达北纬 45-50 度,一直延伸到加拿大南部,而最南端则接近墨西哥湾沿岸。响应曲线显示,在最冷月份的最低温度低于冰点时,适宜性达到峰值。原生模式和入侵模式之间相似的分布驱动因素,以及原生范围内出现的入侵生态位,都表明入侵种群的生态位保守性。总之,北美洲气候适宜栖息地的广阔区域表明气候非常有利,这突出表明需要进一步研究生物因素和管理策略,以减轻传播和影响。
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引用次数: 0
期刊
Journal of Asia-Pacific Biodiversity
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