The insights into the molecular mechanisms of the primary nucleation of amyloid-β (Aβ) that bind zinc ions are crucial for prevention of toxic early-stage oligomers that yield to Alzheimer's disease. The structural characterization of the polymorphic early-stage zinc-bound Aβ oligomers at the atomic level are unknown due to the limitations of experimental techniques. Here, a comprehensive computational tools are applied to systematically investigate how zinc ions concentration and binding site specificity affect the conformational landscape of polymorphic early-stage Aβ oligomers. The study reveals distinct molecular mechanisms that are influenced by the zinc ions concentrations, zinc-binding sites, and the structure of the polymorphic Aβ dimers. The polymorphic structures of zinc-bound Aβ dimers are determined at the molecular level. The study reveals that zinc ions enhance the rigidity of the polymorphic Aβ dimers and promote structural changes along the hydrophobic domains. Zinc ions selectively decrease hydrogen bonding and increase water solvation in β-sheet-like dimers. Finally, the population is shifted toward zinc-bound random-coil Aβ dimers over zinc-bound β-sheet-structured dimers. The findings provide a molecular-level description of polymorphic zinc-Aβ dimer interactions under various metal:Aβ ratios and distinct binding sites, offering structural insights that may guide the design of future experimental studies on Aβ aggregation.
结合锌离子的淀粉样蛋白-β (Aβ)初级成核的分子机制对预防导致阿尔茨海默病的毒性早期低聚物至关重要。由于实验技术的限制,多晶早期锌结合Aβ低聚物在原子水平上的结构表征尚不清楚。本文采用综合计算工具系统地研究了锌离子浓度和结合位点特异性如何影响多态早期a β低聚物的构象景观。该研究揭示了受锌离子浓度、锌结合位点和多态Aβ二聚体结构影响的不同分子机制。锌结合的Aβ二聚体的多态结构在分子水平上确定。研究表明,锌离子增强了多态Aβ二聚体的刚性,促进了疏水结构域的结构变化。锌离子选择性地降低β-片状二聚体的氢键,增加水溶剂化。最后,种群向锌结合的随机线圈型Aβ二聚体转移,而不是锌结合的β-片状结构二聚体。这些发现提供了在不同金属:a β比率和不同结合位点下多态锌- a β二聚体相互作用的分子水平描述,提供了可能指导未来a β聚集实验研究设计的结构见解。
{"title":"Structural and Molecular Basis of Zinc-Induced Primary Nucleation of Polymorphic Amyloid-β Dimers","authors":"Karina Abramov Harpaz, Yifat Miller","doi":"10.1002/ejic.202500331","DOIUrl":"https://doi.org/10.1002/ejic.202500331","url":null,"abstract":"<p>The insights into the molecular mechanisms of the primary nucleation of amyloid-β (Aβ) that bind zinc ions are crucial for prevention of toxic early-stage oligomers that yield to Alzheimer's disease. The structural characterization of the polymorphic early-stage zinc-bound Aβ oligomers at the atomic level are unknown due to the limitations of experimental techniques. Here, a comprehensive computational tools are applied to systematically investigate how zinc ions concentration and binding site specificity affect the conformational landscape of polymorphic early-stage Aβ oligomers. The study reveals distinct molecular mechanisms that are influenced by the zinc ions concentrations, zinc-binding sites, and the structure of the polymorphic Aβ dimers. The polymorphic structures of zinc-bound Aβ dimers are determined at the molecular level. The study reveals that zinc ions enhance the rigidity of the polymorphic Aβ dimers and promote structural changes along the hydrophobic domains. Zinc ions selectively decrease hydrogen bonding and increase water solvation in β-sheet-like dimers. Finally, the population is shifted toward zinc-bound random-coil Aβ dimers over zinc-bound β-sheet-structured dimers. The findings provide a molecular-level description of polymorphic zinc-Aβ dimer interactions under various metal:Aβ ratios and distinct binding sites, offering structural insights that may guide the design of future experimental studies on Aβ aggregation.</p>","PeriodicalId":38,"journal":{"name":"European Journal of Inorganic Chemistry","volume":"28 30","pages":""},"PeriodicalIF":2.0,"publicationDate":"2025-09-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://chemistry-europe.onlinelibrary.wiley.com/doi/epdf/10.1002/ejic.202500331","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145341591","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pratima Dhawan, Oussama Tihouna, Christoph Wölper, Joost Möbius, Hannah Siera, Gebhard Haberhauer, Stephan Schulz
Heavy main group element compounds with heteronuclear double bonds are of interest due to their fascinating reactivity. Herein, the synthesis of silaphosphenes L1Ga(X)PSiL2 (X = Cl 2a, Me 2b, L1 = [N(Dipp)C(Me)]2CH, Dipp = 2,6-iPr2C6H3; L2 = PhC(NtBu)2) and L1Ga(Cl)PSiL44 (L4 = [N(Dipp)C(Me)]2) is reported, which are obtained from reactions of gallaphosphaketenes L1Ga(X)PCO (X = Cl 1a, Me 1b) with silylenes L2SiCl and the N-heterocyclic silylene L4Si, respectively. In contrast, gallaphosphene L1GaPSi(Cl)L33 (L3 = DippNC(CH3)CHC(CH2)NDipp) formed in the reaction of 1a with the β-diketiminate-substituted silylene L3Si. Silaphosphenes 2a and 4 and gallaphosphene 3 are promising reagents for reactions with nucleophiles and electrophiles as is exemplarily demonstrated with HCl, MeI, MeOTf, MeLi, BnOH, BnNC, and CO2, respectively.
{"title":"Reactions of Gallaphosphaketenes with Silylenes: Formation of Gallaphosphenes versus Silaphosphenes","authors":"Pratima Dhawan, Oussama Tihouna, Christoph Wölper, Joost Möbius, Hannah Siera, Gebhard Haberhauer, Stephan Schulz","doi":"10.1002/ejic.202500311","DOIUrl":"https://doi.org/10.1002/ejic.202500311","url":null,"abstract":"<p>Heavy main group element compounds with heteronuclear double bonds are of interest due to their fascinating reactivity. Herein, the synthesis of silaphosphenes L<sup>1</sup>Ga(X)PSiL<sup>2</sup> (X = Cl <b>2a</b>, Me <b>2b</b>, L<sup>1</sup> = [N(Dipp)C(Me)]<sub>2</sub>CH, Dipp = 2,6-<sup><i>i</i></sup>Pr<sub>2</sub>C<sub>6</sub>H<sub>3</sub>; L<sup>2</sup> = PhC(N<sup><i>t</i></sup>Bu)<sub>2</sub>) and L<sup>1</sup>Ga(Cl)PSiL<sup>4</sup> <b>4</b> (L<sup>4</sup> = [N(Dipp)C(Me)]<sub>2</sub>) is reported, which are obtained from reactions of gallaphosphaketenes L<sup>1</sup>Ga(X)PCO (X = Cl <b>1a</b>, Me <b>1b</b>) with silylenes L<sup>2</sup>SiCl and the N-heterocyclic silylene L<sup>4</sup>Si, respectively. In contrast, gallaphosphene L<sup>1</sup>GaPSi(Cl)L<sup>3</sup> <b>3</b> (L<sup>3</sup> = DippNC(CH<sub>3</sub>)CHC(CH<sub>2</sub>)NDipp) formed in the reaction of <b>1a</b> with the β-diketiminate-substituted silylene L<sup>3</sup>Si. Silaphosphenes <b>2a</b> and <b>4</b> and gallaphosphene <b>3</b> are promising reagents for reactions with nucleophiles and electrophiles as is exemplarily demonstrated with HCl, MeI, MeOTf, MeLi, BnOH, BnNC, and CO<sub>2</sub>, respectively.</p>","PeriodicalId":38,"journal":{"name":"European Journal of Inorganic Chemistry","volume":"28 29","pages":""},"PeriodicalIF":2.0,"publicationDate":"2025-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://chemistry-europe.onlinelibrary.wiley.com/doi/epdf/10.1002/ejic.202500311","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145297165","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Two crown ether-appended tetraazanaphthacene derivatives (15CE and 18CE) are synthesized, and their radical anion species (15CE’ and 18CE’) are further obtained by electrocrystallization. Single-crystal X-ray analysis reveals the crystal structures of all metal complexes based on 15CE and 18CE derivatives, which can be modulated by the selection of metal ion salts. 15CE and 18CE can capture metal ions depending on the size of the crown ether moieties to form metal complexes in the crystal state. On the other hand, 15CE’ and 18CE’ are generated by electrocrystallization of 15CE and 18CE using metal salts as the electrolyte, whose imino-N atoms can coordinate to metal ions. As a result, 15CE’ and 18CE’ can work as bridging radical anion ligands to self-assemble into a 3D coordination polymer and a 1D coordination polymer with helical structures, respectively. In particular, the use of both crown ether and the tetraazanaphthacene framework as a bridging radical anion ligand is the essential strategy to expand the diversity of crystal engineering because of being capable of the dramatic change in crystal structures.
{"title":"Modulating the Crystal Structure of Crown Ether-Appended Tetraazanaphthacenes by Formations of Metal Ion Complex and Their Radical Anion Species","authors":"Kyosuke Isoda, Kaoru Adachi, Tomoaki Sugaya, Kazuya Kubo, Takayoshi Nakamura, Makoto Tadokoro","doi":"10.1002/ejic.202500332","DOIUrl":"https://doi.org/10.1002/ejic.202500332","url":null,"abstract":"<p>Two crown ether-appended tetraazanaphthacene derivatives (<b>15CE</b> and <b>18CE</b>) are synthesized, and their radical anion species (<b>15CE’</b> and <b>18CE’</b>) are further obtained by electrocrystallization. Single-crystal X-ray analysis reveals the crystal structures of all metal complexes based on <b>15CE</b> and <b>18CE</b> derivatives, which can be modulated by the selection of metal ion salts. <b>15CE</b> and <b>18CE</b> can capture metal ions depending on the size of the crown ether moieties to form metal complexes in the crystal state. On the other hand, <b>15CE’</b> and <b>18CE’</b> are generated by electrocrystallization of <b>15CE</b> and <b>18CE</b> using metal salts as the electrolyte, whose imino-N atoms can coordinate to metal ions. As a result, <b>15CE’</b> and <b>18CE’</b> can work as bridging radical anion ligands to self-assemble into a 3D coordination polymer and a 1D coordination polymer with helical structures, respectively. In particular, the use of both crown ether and the tetraazanaphthacene framework as a bridging radical anion ligand is the essential strategy to expand the diversity of crystal engineering because of being capable of the dramatic change in crystal structures.</p>","PeriodicalId":38,"journal":{"name":"European Journal of Inorganic Chemistry","volume":"28 29","pages":""},"PeriodicalIF":2.0,"publicationDate":"2025-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145297198","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Monika Michaelis, Marion J. Limo, Swetha R. Kothur, Carole C. Perry
Platinum-binding peptides (PtBPs) identified via phage display have emerged as powerful molecular tools for the controlled synthesis and functionalization of nanostructured platinum surfaces. However, the molecular determinants governing their surface recognition, binding strength, and structural adaptability remain incompletely understood. Here, a comparative analysis of five PtBPs, three previously reported (TLTTLTN, SSFPQPN, TLHVSSY) and two newly identified by phage display (TGELSQK, LLVTSVT), using quartz crystal microbalance with dissipation monitoring (QCM-D) and synchrotron radiation circular dichroism (SRCD) spectroscopy, is presented. Adsorption kinetics and binding affinities determined by QCM-D reveal sequence-specific differences in association and dissociation rates, which correlate with the viscoelastic properties of the adsorbed layers. SRCD spectra show that all peptides adopt predominantly disordered conformations in solution but exhibit facet-dependent spectral shifts upon adsorption onto platinum nanoparticles, consistent with conformational adaptation at the interface. The combined data highlight the importance of amino acid composition, kinetic binding parameters, and conformational flexibility in governing Pt–PtBP interactions. This integrated approach provides a deeper understanding of peptide–surface recognition and may support the rational design of sequence-defined biomolecules for use in catalysis, surface modification, and biomedical nanotechnology.
{"title":"Platinum-Binding Peptides: Binding Kinetics, Affinities, and Facet-Specific Conformational Adaptation","authors":"Monika Michaelis, Marion J. Limo, Swetha R. Kothur, Carole C. Perry","doi":"10.1002/ejic.202500224","DOIUrl":"https://doi.org/10.1002/ejic.202500224","url":null,"abstract":"<p>Platinum-binding peptides (PtBPs) identified via phage display have emerged as powerful molecular tools for the controlled synthesis and functionalization of nanostructured platinum surfaces. However, the molecular determinants governing their surface recognition, binding strength, and structural adaptability remain incompletely understood. Here, a comparative analysis of five PtBPs, three previously reported (TLTTLTN, SSFPQPN, TLHVSSY) and two newly identified by phage display (TGELSQK, LLVTSVT), using quartz crystal microbalance with dissipation monitoring (QCM-D) and synchrotron radiation circular dichroism (SRCD) spectroscopy, is presented. Adsorption kinetics and binding affinities determined by QCM-D reveal sequence-specific differences in association and dissociation rates, which correlate with the viscoelastic properties of the adsorbed layers. SRCD spectra show that all peptides adopt predominantly disordered conformations in solution but exhibit facet-dependent spectral shifts upon adsorption onto platinum nanoparticles, consistent with conformational adaptation at the interface. The combined data highlight the importance of amino acid composition, kinetic binding parameters, and conformational flexibility in governing Pt–PtBP interactions. This integrated approach provides a deeper understanding of peptide–surface recognition and may support the rational design of sequence-defined biomolecules for use in catalysis, surface modification, and biomedical nanotechnology.</p>","PeriodicalId":38,"journal":{"name":"European Journal of Inorganic Chemistry","volume":"28 27","pages":""},"PeriodicalIF":2.0,"publicationDate":"2025-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://chemistry-europe.onlinelibrary.wiley.com/doi/epdf/10.1002/ejic.202500224","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145196397","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Sulfides constitute an important group of ionic conductive solids for all-solid-state lithium-ion batteries, whereas their poor stability against air and humidity inhibits the accurate experimental evaluation of their intrinsic conductivity. In this paper, a new structural tool, the cluster-plus-glue-atom model, is used to correlate the lithium conduction and crystal structure in sulfide solid-state electrolytes (SSEs). This model identifies the anion-based composition unit in any sulfide as being composed of an anion unit and stoichiometrically matched cations. The anion unit covers a nearest-neighbor anion cluster plus next-neighbor “glue” anions, generally containing 16 or 24 anions. Cations occupy interstitials within the anion unit, with transmission-active Li ions inside anionic triangular dipyramids and octahedra. It is assumed that the Li transmission is realized through adjacent active Li sites of inter-distances falling close to the anion nearest-neighbor distances. The number of such Li–Li pairs per anion (n) is proposed to correlate with room-temperature ionic conductivities (σ) of typical sulfide SSEs. It is revealed for SSEs with 3D Li diffusion channels that the upper limits of the measured σ‘s follow approximately log(σ) = −3 + n/3, enabling a fast evaluation of these SSEs. Accordingly, Li7SiPS8, Li10SnP2S12, and Li10GeP2S12, with their n's falling in 3–5, should be promising SSEs.
{"title":"A Cluster-Based Model of Anionic Frameworks for Evaluating Lithium Conductivity in Sulfide Solid-State Electrolytes","authors":"Xiaoyang Zhang, Jiliang Zhang, Chaoqian Liu, Shuang Zhang, Yong-Mook Kang, Chuang Dong","doi":"10.1002/ejic.202500282","DOIUrl":"https://doi.org/10.1002/ejic.202500282","url":null,"abstract":"<p>Sulfides constitute an important group of ionic conductive solids for all-solid-state lithium-ion batteries, whereas their poor stability against air and humidity inhibits the accurate experimental evaluation of their intrinsic conductivity. In this paper, a new structural tool, the cluster-plus-glue-atom model, is used to correlate the lithium conduction and crystal structure in sulfide solid-state electrolytes (SSEs). This model identifies the anion-based composition unit in any sulfide as being composed of an anion unit and stoichiometrically matched cations. The anion unit covers a nearest-neighbor anion cluster plus next-neighbor “glue” anions, generally containing 16 or 24 anions. Cations occupy interstitials within the anion unit, with transmission-active Li ions inside anionic triangular dipyramids and octahedra. It is assumed that the Li transmission is realized through adjacent active Li sites of inter-distances falling close to the anion nearest-neighbor distances. The number of such Li–Li pairs per anion (<i>n</i>) is proposed to correlate with room-temperature ionic conductivities (σ) of typical sulfide SSEs. It is revealed for SSEs with 3D Li diffusion channels that the upper limits of the measured <i>σ</i>‘s follow approximately log(<i>σ</i>) = −3 + <i>n</i>/3, enabling a fast evaluation of these SSEs. Accordingly, Li<sub>7</sub>SiPS<sub>8</sub>, Li<sub>10</sub>SnP<sub>2</sub>S<sub>12</sub>, and Li<sub>10</sub>GeP<sub>2</sub>S<sub>12</sub>, with their <i>n</i>'s falling in 3–5, should be promising SSEs.</p>","PeriodicalId":38,"journal":{"name":"European Journal of Inorganic Chemistry","volume":"28 26","pages":""},"PeriodicalIF":2.0,"publicationDate":"2025-08-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145135821","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Thabiso Mphuti, Rotondwa Mphephu, Moegamat Joseph, Andrew J. Swarts
The Front Cover depicts the solvent-dependent hydrogen production pathways during formic acid dehydrogenation, mediated by a ruthenium(II) iminopyridine-ligated complex. The background shows a map of the Braamfontein East Campus of Wits University, with formic acid represented by the Humphrey Raikes building, which houses the School of Chemistry. The two routes lead to hydrogen production, depicted by the iconic Great Hall. More information can be found in the Research Article by A. J. Swarts and co-workers (DOI: 10.1002/ejic.202500212).