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Intercellular Transport of Viral Proteins. 病毒蛋白质的细胞间转运。
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1007/978-3-031-62036-2_18
Florian Simon, Andrea K Thoma-Kress

Viruses are vehicles to exchange genetic information and proteins between cells and organisms by infecting their target cells either cell-free, or depending on cell-cell contacts. Several viruses like certain retroviruses or herpesviruses transmit by both mechanisms. However, viruses have also evolved the properties to exchange proteins between cells independent of viral particle formation. This exchange of viral proteins can be directed to target cells prior to infection to interfere with restriction factors and intrinsic immunity, thus, making the target cell prone to infection. However, also bystander cells, e.g. immune cell populations, can be targeted by viral proteins to dampen antiviral responses. Mechanistically, viruses exploit several routes of cell-cell communication to exchange viral proteins like the formation of extracellular vesicles or the formation of long-distance connections like tunneling nanotubes. Although it is known that viral nucleic acids can be transferred between cells as well, this chapter concentrates on viral proteins of human pathogenic viruses covering all Baltimore classes and summarizes our current knowledge on intercellular transport of viral proteins between cells.

病毒是在细胞和生物体之间交换遗传信息和蛋白质的载体,它通过无细胞或细胞间接触感染目标细胞。一些病毒(如某些逆转录病毒或疱疹病毒)通过这两种机制进行传播。不过,病毒也进化出了在细胞间交换蛋白质的特性,而不依赖于病毒颗粒的形成。病毒蛋白的这种交换可以在感染前定向到目标细胞,干扰限制因子和内在免疫,从而使目标细胞容易受到感染。然而,病毒蛋白也可以针对旁观者细胞,如免疫细胞群,以抑制抗病毒反应。从机理上讲,病毒利用多种细胞-细胞通信途径交换病毒蛋白,如形成细胞外囊泡或形成长距离连接,如隧道纳米管。虽然我们知道病毒核酸也可以在细胞间传输,但本章主要讨论人类致病病毒的病毒蛋白,涵盖巴尔的摩病毒的所有类别,并总结了我们目前对病毒蛋白在细胞间传输的了解。
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引用次数: 0
Subversion from Within and Without: Effector Molecule Transfer from Obligate Intracellular Apicomplexan Parasites to Human Host Cells. 来自内部和外部的颠覆:细胞内寄生虫向人类宿主细胞的效应分子转移。
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1007/978-3-031-62036-2_20
Ramakrishnan Sitaraman

Intracellular protozoan pathogens have to negotiate the internal environment of the host cell they find themselves in, as well as manipulate the host cell to ensure their own survival, replication, and dissemination. The transfer of key effector molecules from the pathogen to the host cell is crucial to this interaction and is technically more demanding to study as compared to an extracellular pathogen. While several effector molecules have been identified, the mechanisms and conditions underlying their transfer to the host cell remain partly or entirely unknown. Improvements in experimental systems have revealed tantalizing details of such intercellular transfer, which form the subject of this chapter.

胞内原生动物病原体必须与宿主细胞的内部环境进行协商,并操纵宿主细胞以确保自身的生存、复制和传播。将关键效应分子从病原体转移到宿主细胞是这种相互作用的关键,与细胞外病原体相比,这种研究在技术上要求更高。虽然已经确定了几种效应分子,但它们转移到宿主细胞的机制和条件仍然部分或完全未知。实验系统的改进揭示了这种细胞间转移的诱人细节,这些细节构成了本章的主题。
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引用次数: 0
Exosome Mediated Cell-Cell Crosstalk in Tissue Injury and Repair. 外泌体在组织损伤和修复中介导的细胞间串联作用
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1007/978-3-031-62036-2_12
Anita Yadav, Aparajita Nandy, Anu Sharma, Subhadip Ghatak

The landscape of exosome research has undergone a significant paradigm shift, with a departure from early conceptions of exosomes as vehicles for cellular waste disposal towards their recognition as integral components of cellular communication with therapeutic potential. This chapter presents an exhaustive elucidation of exosome biology, detailing the processes of exosome biogenesis, release, and uptake, and their pivotal roles in signal transduction, tissue repair, regeneration, and intercellular communication. Additionally, the chapter highlights recent innovations and anticipates future directions in exosome research, emphasizing their applicability in clinical settings. Exosomes have the unique ability to navigate through tissue spaces to enter the circulatory system, positioning them as key players in tissue repair. Their contributory role in various processes of tissue repair, although in the nascent stages of investigation, stands out as a promising area of research. These vesicles function as a complex signaling network for intracellular and organ-level communication, critical in both pathological and physiological contexts. The chapter further explores the tissue-specific functionality of exosomes and underscores the advancements in methodologies for their isolation and purification, which have been instrumental in expanding the scope of exosome research. The differential cargo profiles of exosomes, dependent on their cellular origin, position them as prospective diagnostic biomarkers for tissue damage and regenerative processes. Looking ahead, the trajectory of exosome research is anticipated to bring transformative changes to biomedical fields. This includes advancing diagnostic and prognostic techniques that utilize exosomes as non-invasive biomarkers for a plethora of diseases, such as cancer, neurodegenerative, and cardiovascular conditions. Additionally, engineering exosomes through alterations of their native content or surface properties presents a novel frontier, including the synthesis of artificial or hybrid variants with enhanced functional properties. Concurrently, the ethical and regulatory frameworks surrounding exosome research, particularly in clinical translation, will require thorough deliberation. In conclusion, the diverse aspects of exosome research are coalescing to redefine the frontiers of diagnostic and therapeutic methodologies, cementing its importance as a discipline of considerable consequence in the biomedical sciences.

外泌体研究经历了重大的范式转变,从早期将外泌体视为细胞废物处理工具的观念转变为将其视为具有治疗潜力的细胞通讯不可或缺的组成部分。本章详尽阐述了外泌体生物学,详细介绍了外泌体的生物生成、释放和吸收过程,以及它们在信号转导、组织修复、再生和细胞间通讯中的关键作用。此外,本章还重点介绍了外泌体研究的最新创新成果,并预测了未来的研究方向,强调了外泌体在临床环境中的适用性。外泌体具有穿越组织间隙进入循环系统的独特能力,使其成为组织修复的关键角色。虽然外泌体在组织修复的各种过程中发挥的作用还处于研究的初级阶段,但已成为一个前景广阔的研究领域。这些囊泡是细胞内和器官水平交流的复杂信号网络,在病理和生理情况下都至关重要。本章进一步探讨了外泌体的组织特异性功能,并强调了外泌体分离和纯化方法的进步,这些进步有助于扩大外泌体的研究范围。外泌体的不同货物特征取决于其细胞来源,这使它们成为组织损伤和再生过程的前瞻性诊断生物标记物。展望未来,外泌体研究的发展轨迹有望为生物医学领域带来变革。这包括利用外泌体作为癌症、神经退行性疾病和心血管疾病等多种疾病的非侵入性生物标志物,推进诊断和预后技术的发展。此外,通过改变外泌体的原生成分或表面特性对其进行工程改造也是一个新领域,包括合成具有更强功能特性的人工变体或混合变体。与此同时,围绕外泌体研究的伦理和监管框架,特别是在临床转化方面,也需要进行充分的讨论。总之,外泌体研究的方方面面正在凝聚在一起,重新定义诊断和治疗方法的前沿,巩固其作为生物医学科学中一门重要学科的地位。
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引用次数: 0
Macrophages in Lung Repair and Fibrosis. 肺修复和纤维化中的巨噬细胞
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1007/978-3-031-65944-7_10
Yago A P Jannini-Sá, Brecht Creyns, Cory M Hogaboam, William C Parks, Miriam S Hohmann

Macrophages are key regulators of tissue repair and fibrosis. Following injury, macrophages undergo marked phenotypic and functional changes to play crucial roles throughout the phases of tissue repair. Idiopathic Pulmonary Fibrosis, which is the most common fibrosing lung disease, has been described as an aberrant reparative response to repetitive alveolar epithelial injury in a genetically susceptible aging individual. The marked destruction of the lung architecture results from the excessive secretion of extracellular matrix by activated fibroblasts and myofibroblasts. Accumulating evidence suggests that macrophages have a pivotal regulatory role in pulmonary fibrosis. The origins and characteristics of macrophages in the lung and their role in regulating lung homeostasis, repair, and fibrosis are reviewed herein. We discuss recent studies that have employed single-cell RNA-sequencing to improve the identification and characterization of macrophage populations in the context of homeostatic and fibrotic conditions. We also discuss the current understanding of the macrophage-mediated mechanisms underlying the initiation and progression of pulmonary fibrosis, with a focus on the phenotypic and functional changes that aging macrophages acquire and how these changes ultimately contribute to age-related chronic lung diseases.

巨噬细胞是组织修复和纤维化的关键调节因子。损伤后,巨噬细胞会发生明显的表型和功能变化,在整个组织修复阶段发挥关键作用。特发性肺纤维化是最常见的肺纤维化疾病,被描述为遗传易感的衰老个体对肺泡上皮反复损伤的异常修复反应。活化的成纤维细胞和肌成纤维细胞过度分泌细胞外基质,导致肺部结构明显破坏。越来越多的证据表明,巨噬细胞在肺纤维化中起着关键的调节作用。本文综述了巨噬细胞在肺中的起源、特征及其在调节肺稳态、修复和纤维化中的作用。我们讨论了最近的一些研究,这些研究利用单细胞 RNA 测序改进了巨噬细胞群在平衡和纤维化条件下的识别和特征描述。我们还讨论了目前对巨噬细胞介导的肺纤维化启动和进展机制的理解,重点是老化巨噬细胞获得的表型和功能变化,以及这些变化如何最终导致与年龄相关的慢性肺部疾病。
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引用次数: 0
Syncytium Induced by Plant-Parasitic Nematodes. 植物寄生线虫诱导合胞体。
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1007/978-3-031-37936-9_18
Mateusz Matuszkiewicz, Mirosław Sobczak

Plant-parasitic nematodes from the genera Globodera, Heterodera (cyst-forming nematodes), and Meloidogyne (root-knot nematodes) are notorious and serious pests of crops. They cause tremendous economic losses between US $80 and 358 billion a year. Nematodes infect the roots of plants and induce the formation of specialised feeding structures (syncytium and giant cells, respectively) that nourish juveniles and adults of the nematodes. The specialised secretory glands enable nematodes to synthesise and secrete effectors that facilitate migration through root tissues and alter the morphogenetic programme of host cells. The formation of feeding sites is associated with the suppression of plant defence responses and deep reprogramming of the development and metabolism of plant cells.In this chapter, we focus on syncytia induced by the sedentary cyst-forming nematodes and provide an overview of ultrastructural changes that occur in the host roots during syncytium formation in conjunction with the most important molecular changes during compatible and incompatible plant responses to infection with nematodes.

植物寄生线虫属(Globodera属)、异囊线虫属(Heterodera属)和根结线虫属(Meloidogyne属)是危害农作物的严重害虫。它们每年造成800亿至3580亿美元的巨大经济损失。线虫感染植物的根部并诱导形成专门的摄食结构(分别为合胞体和巨细胞),为线虫的幼虫和成虫提供营养。专门的分泌腺使线虫能够合成和分泌效应物,促进通过根组织的迁移和改变宿主细胞的形态发生程序。取食位点的形成与植物防御反应的抑制以及植物细胞发育和代谢的深度重编程有关。在本章中,我们将重点关注由久坐的囊形成线虫诱导的合胞体,并概述在合胞体形成过程中宿主根部发生的超微结构变化,以及植物对线虫感染的亲和和不亲和反应中最重要的分子变化。
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引用次数: 0
Gastrulation: Its Principles and Variations. 胃形成:其原理和变异。
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1007/978-3-031-39027-2_3
Hisato Kondoh

As epiblast cells initiate development into various somatic cells, they undergo a large-scale reorganization, called gastrulation. The gastrulation of the epiblast cells produces three groups of cells: the endoderm layer, the collection of miscellaneous mesodermal tissues, and the ectodermal layer, which includes the neural, epidermal, and associated tissues. Most studies of gastrulation have focused on the formation of the tissues that provide the primary route for cell reorganization, that is, the primitive streak, in the chicken and mouse. In contrast, how gastrulation alters epiblast-derived cells has remained underinvestigated. This chapter highlights the regulation of cell and tissue fate via the gastrulation process. The roles and regulatory functions of neuromesodermal progenitors (NMPs) in the gastrulation process, elucidated in the last decade, are discussed in depth to resolve points of confusion. Chicken and mouse embryos, which form a primitive streak as the site of mesoderm precursor ingression, have been investigated extensively. However, primitive streak formation is an exception, even among amniotes. The roles of gastrulation processes in generating various somatic tissues will be discussed broadly.

当上胚层细胞开始发育成各种体细胞时,它们会经历一次大规模的重组,即胃形成。上胚层细胞的胃形成产生了三组细胞:内胚层、各种中胚层组织的集合体和外胚层,其中包括神经、表皮和相关组织。大多数关于胃形成的研究都集中在为细胞重组提供主要途径的组织的形成上,即鸡和小鼠的原始条纹。相比之下,对胃形成如何改变上胚层衍生细胞的研究仍然不足。本章将重点介绍胃形成过程对细胞和组织命运的调控。本章深入讨论了过去十年中阐明的神经表皮祖细胞(NMPs)在胃形成过程中的作用和调控功能,以解决混淆点。鸡和小鼠胚胎形成的原始条纹是中胚层前体萌发的部位,这一点已得到广泛研究。然而,即使在羊膜动物中,原始条纹的形成也是一个例外。我们将广泛讨论胃形成过程在生成各种体细胞组织中的作用。
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引用次数: 0
Organ Regeneration Without Relying on Regeneration-Dedicated Stem Cells. 器官再生无需依赖再生专用干细胞。
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1007/978-3-031-39027-2_6
Hisato Kondoh

The classic conception of tissue regeneration assumed the existence of tissue-proper regeneration stem cells that are set aside during normal tissue development and reserved as stem cells for regeneration. However, modern studies using cell tracing and other approaches have ruled out the presence of regeneration-proper stem cells in most cases in vertebrate tissue regeneration. The only experimentally validated regeneration-dedicated reserve cells are the satellite cells in skeletal muscle (e.g., Michele 2022) (see Sect. 5.2.3 ). Here, we will first discuss examples of large-scale tissue regeneration, liver regeneration in mammals, and lens and limb regeneration in newts. Then, attempts to widen the tissue regeneration capacity in mammals with exogenous transcription factor genes will be reviewed.

组织再生的经典概念假定存在组织再生干细胞,这些干细胞在正常组织发育过程中被搁置,作为再生干细胞保留下来。然而,利用细胞追踪和其他方法进行的现代研究已经排除了脊椎动物组织再生中大多数情况下存在再生专用干细胞的可能性。唯一经实验验证的再生专用储备细胞是骨骼肌中的卫星细胞(如米歇尔 2022)(见第 5.2.3 节)。在此,我们将首先讨论大规模组织再生、哺乳动物肝脏再生以及蝾螈晶状体和肢体再生的实例。然后,我们将回顾利用外源转录因子基因扩大哺乳动物组织再生能力的尝试。
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引用次数: 0
Female Germline Cysts in Animals: Evolution and Function. 动物雌性生殖系囊肿:进化和功能。
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1007/978-3-031-37936-9_2
John L Brubacher

Germline cysts are syncytia formed by incomplete cytokinesis of mitotic germline precursors (cystoblasts) in which the cystocytes are interconnected by cytoplasmic bridges, permitting the sharing of molecules and organelles. Among animals, such cysts are a nearly universal feature of spermatogenesis and are also often involved in oogenesis. Recent, elegant studies have demonstrated remarkable similarities in the oogenic cysts of mammals and insects, leading to proposals of widespread conservation of these features among animals. Unfortunately, such claims obscure the well-described diversity of female germline cysts in animals and ignore major taxa in which female germline cysts appear to be absent. In this review, I explore the phylogenetic patterns of oogenic cysts in the animal kingdom, with a focus on the hexapods as an informative example of a clade in which such cysts have been lost, regained, and modified in various ways. My aim is to build on the fascinating insights of recent comparative studies, by calling for a more nuanced view of evolutionary conservation. Female germline cysts in the Metazoa are an example of a phenomenon that-though essential for the continuance of many, diverse animal lineages-nevertheless exhibits intriguing patterns of evolutionary innovation, loss, and convergence.

生殖系包囊是由有丝分裂的生殖系前体(囊母细胞)的不完全胞质分裂形成的合胞体,其中囊细胞通过细胞质桥相互连接,允许共享分子和细胞器。在动物中,这种囊肿几乎是精子发生的普遍特征,也经常涉及卵子发生。最近,一些优雅的研究已经证明了哺乳动物和昆虫的卵囊有显著的相似之处,从而提出了在动物中广泛保护这些特征的建议。不幸的是,这种说法模糊了动物中雌性生殖系囊肿的多样性,并忽略了雌性生殖系囊肿似乎不存在的主要分类群。在这篇综述中,我探索了动物王国中卵源性囊肿的系统发育模式,并将重点放在六足动物身上,作为一个信息丰富的例子,在这个进化分支中,这种囊肿以各种方式丢失、恢复和修改。我的目的是建立在最近比较研究的迷人见解的基础上,呼吁对进化守恒有更细致入微的看法。后生动物的雌性生殖系囊肿是一种现象的例子,尽管这种现象对许多不同的动物谱系的延续至关重要,但它仍然表现出有趣的进化创新、丧失和趋同模式。
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引用次数: 0
Different Types of Pluripotent Stem Cells Represent Different Developmental Stages. 不同类型的多能干细胞代表不同的发育阶段。
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1007/978-3-031-39027-2_2
Hisato Kondoh

Pluripotent stem cell lines established from early-stage embryos of mammals or other species represent the embryonic stages before the initiation of somatic development. In these stem cell lines, cell proliferation capacity is maintained while developmental progression is arrested at a specific developmental stage that is determined by the combination of culture conditions, cell state, and species. All of these pluripotent stem cell lines express the transcription factors (TFs) Sox2 and Pou5f1 (Oct3/4); hence, these TFs are often regarded as pluripotency factors. However, the regulatory roles of these TFs vary depending on the cell line type. The cell lines representing preimplantation stage embryonic cells (mouse embryonic stem cells, mESCs) are regulated principally by the combined action of Sox2 and Pou5f1. Human ESCs and mouse epiblast stem cells (EpiSCs) represent immature and mature epiblast cells, respectively, where Otx2 and Zic2 progressively take over the preimplantation stage's regulatory roles of Sox2 and Pou5f1. This transition of the core TFs occurs to prepare for the initiation of somatic development.

从哺乳动物或其他物种早期胚胎建立的多能干细胞系代表了体细胞发育开始前的胚胎阶段。在这些干细胞系中,细胞增殖能力得以保持,而发育进程则在特定发育阶段停止,该阶段由培养条件、细胞状态和物种组合决定。所有这些多能干细胞系都表达转录因子(TFs)Sox2和Pou5f1(Oct3/4);因此,这些TFs通常被视为多能因子。然而,这些转录因子的调控作用因细胞系类型而异。代表着着床前胚胎细胞(小鼠胚胎干细胞,mESCs)的细胞系主要受 Sox2 和 Pou5f1 的联合作用调控。 人类 ESCs 和小鼠上胚层干细胞(EpiSCs)分别代表着未成熟和成熟的上胚层细胞,其中 Otx2 和 Zic2 逐步取代着床前阶段 Sox2 和 Pou5f1 的调控作用。 核心 TFs 的这种转变是为启动体细胞发育做准备。
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引用次数: 0
How the Brain Develops from the Epiblast: The Node Is Not an Organizer. 大脑如何从外胚层发育而来?节点不是组织者
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1007/978-3-031-39027-2_4
Hisato Kondoh

Studies using early-stage avian embryos have substantially impacted developmental biology, through the availability of simple culture methods and easiness in tissue manipulation. However, the regulations underlying brain and head development, a central issue of developmental biology, have not been investigated systematically. Yoshihi et al. (2022a) devised a technique to randomly label the epiblast cells with a green fluorescent protein before their development into the brain tissue. This technique was combined with grafting a node or node-derived anterior mesendoderm labeled with a cherry-colored fluorescent protein. Then cellular events were live-recorded over 18 hours during the brain and head development. The live imaging-based analyses identified previously undescribed mechanisms central to brain development: all anterior epiblast cells have a potential to develop into the brain tissues and their gathering onto a proximal anterior mesendoderm forms a brain primordium whereas the remaining cells develop into the covering head ectoderm. The analyses also ruled out the direct participation of the node's activity in the brain development. Yoshihi et al. (2022a) also demonstrate how the enigmatic data from classical models can be reinterpreted in the new model.This chapter was adapted from Yoshihi K, Iida H, Teramoto M, Ishii Y, Kato K, Kondoh H. (2022b). Epiblast cells gather onto the anterior mesendoderm and initiate brain development without the direct involvement of the node in avian embryos: Insights from broad-field live imaging. Front Cell Dev Biol. 10:1019845. doi: 10.3389/fcell.2022.1019845.

利用早期鸟类胚胎进行的研究,由于培养方法简单、组织操作容易,对发育生物学产生了重大影响。然而,作为发育生物学的核心问题,大脑和头部发育的基本规律尚未得到系统研究。Yoshihi 等人(2022a)设计了一种技术,在上胚层细胞发育成脑组织之前用绿色荧光蛋白随机标记它们。该技术与移植标记有樱桃色荧光蛋白的结节或结节衍生的前中胚层相结合。然后对大脑和头部发育过程中的细胞事件进行了18小时的实时记录。基于活体成像的分析发现了以前未曾描述过的大脑发育的核心机制:所有前胚层细胞都有可能发育成脑组织,它们聚集到近端前中胚层上形成脑原基,而其余细胞则发育成覆盖头部的外胚层。分析还排除了节点活动直接参与脑发育的可能性。Yoshihi 等人(2022a)还展示了如何在新模型中重新解释经典模型中的神秘数据。在鸟类胚胎中,上胚层细胞聚集到前中胚层并启动大脑发育,而无需节点的直接参与:宽视野实时成像的启示。doi: 10.3389/fcell.2022.1019845.
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引用次数: 0
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Results and Problems in Cell Differentiation
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