Pub Date : 2019-03-13DOI: 10.1007/978-3-030-24202-2_11
K. Pilkiewicz, P. Rana, Michael L. Mayo, P. Ghosh
{"title":"Self-Assembly from a Single-Molecule Perspective","authors":"K. Pilkiewicz, P. Rana, Michael L. Mayo, P. Ghosh","doi":"10.1007/978-3-030-24202-2_11","DOIUrl":"https://doi.org/10.1007/978-3-030-24202-2_11","url":null,"abstract":"","PeriodicalId":415083,"journal":{"name":"International Conference on Bio-inspired Information and Communications Technologies","volume":"40 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"115496851","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-03-13DOI: 10.1007/978-3-030-24202-2_12
Usman Rauf, Mujahid Mohsin, W. Mazurczyk
{"title":"Cyber Regulatory Networks: Towards a Bio-inspired Auto-resilient Framework for Cyber-Defense","authors":"Usman Rauf, Mujahid Mohsin, W. Mazurczyk","doi":"10.1007/978-3-030-24202-2_12","DOIUrl":"https://doi.org/10.1007/978-3-030-24202-2_12","url":null,"abstract":"","PeriodicalId":415083,"journal":{"name":"International Conference on Bio-inspired Information and Communications Technologies","volume":"56 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134449177","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-03-13DOI: 10.1007/978-3-030-24202-2_6
Tomoaki Takagi, K. Takadama, Hiroyuki Sato
{"title":"A Distribution Control of Weight Vector Set for Multi-objective Evolutionary Algorithms","authors":"Tomoaki Takagi, K. Takadama, Hiroyuki Sato","doi":"10.1007/978-3-030-24202-2_6","DOIUrl":"https://doi.org/10.1007/978-3-030-24202-2_6","url":null,"abstract":"","PeriodicalId":415083,"journal":{"name":"International Conference on Bio-inspired Information and Communications Technologies","volume":"65 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"115277113","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2016-05-24DOI: 10.4108/EAI.3-12-2015.2262393
R. Bundschuh
The mitochondrial genome of the slime mold Physarum polycephalum is characterized by pervasive insertional RNA editing. Here, we provide an overview of the quest to identify the sequence determinant of the editing positions in this system. This work was presented at PhysNet 2015.
{"title":"The search for the determinants of insertional RNA editing in Physarum polycephalum mitochondrial RNAs","authors":"R. Bundschuh","doi":"10.4108/EAI.3-12-2015.2262393","DOIUrl":"https://doi.org/10.4108/EAI.3-12-2015.2262393","url":null,"abstract":"The mitochondrial genome of the slime mold Physarum polycephalum is characterized by pervasive insertional RNA editing. Here, we provide an overview of the quest to identify the sequence determinant of the editing positions in this system. This work was presented at PhysNet 2015.","PeriodicalId":415083,"journal":{"name":"International Conference on Bio-inspired Information and Communications Technologies","volume":"45 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-05-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"125177411","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2016-05-24DOI: 10.4108/EAI.3-12-2015.2262466
R. Yokokawa
In this paper, we describe some of our recent studies for motor protein assays using micro/nano fabrications. We fabricated two microfluidic polymer devices that enable to study active transport of kinesins and tau protein detection, respectively. The former device eliminated diffusional transport of target molecules in a single micrometer-scale channel to evaluate only the motor’s active transport, which was dynamically formed by a pneumatic poly(dimethylsiloxane) (PDMS) membrane valve. The latter device enables to detect a microtubule associated protein (MAP), tau protein, for differentiating its isoforms and mutants. These devices will be further integrated with motor protein assays to explore their applicability in bio-inspired nanosystems.
{"title":"Dynamic Microfluidic Channels for Active Nanotransport Driven by Kinesin Motor Proteins","authors":"R. Yokokawa","doi":"10.4108/EAI.3-12-2015.2262466","DOIUrl":"https://doi.org/10.4108/EAI.3-12-2015.2262466","url":null,"abstract":"In this paper, we describe some of our recent studies for motor protein assays using micro/nano fabrications. We fabricated two microfluidic polymer devices that enable to study active transport of kinesins and tau protein detection, respectively. The former device eliminated diffusional transport of target molecules in a single micrometer-scale channel to evaluate only the motor’s active transport, which was dynamically formed by a pneumatic poly(dimethylsiloxane) (PDMS) membrane valve. The latter device enables to detect a microtubule associated protein (MAP), tau protein, for differentiating its isoforms and mutants. These devices will be further integrated with motor protein assays to explore their applicability in bio-inspired nanosystems.","PeriodicalId":415083,"journal":{"name":"International Conference on Bio-inspired Information and Communications Technologies","volume":"31 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-05-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"125660714","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2016-05-24DOI: 10.4108/EAI.3-12-2015.2262467
I. Hayashi, M. Ogino, S. Kita, Jasmin Léveillé
The internal model was proposed by Kawato, in order to express physical motion by associativity of feedback and feedforward control processes. In this paper, we test the internal model in an experiment in which participants push a button on en equipment to match a number displayed on a computer screen. The experimental results can be interpreted as a change in the relative contributions of feedback and feedforward control processes in the internal model.
{"title":"Recognition for Switching of Feedback and Feedforward Process in Motor internal model","authors":"I. Hayashi, M. Ogino, S. Kita, Jasmin Léveillé","doi":"10.4108/EAI.3-12-2015.2262467","DOIUrl":"https://doi.org/10.4108/EAI.3-12-2015.2262467","url":null,"abstract":"The internal model was proposed by Kawato, in order to express physical motion by associativity of feedback and feedforward control processes. In this paper, we test the internal model in an experiment in which participants push a button on en equipment to match a number displayed on a computer screen. The experimental results can be interpreted as a change in the relative contributions of feedback and feedforward control processes in the internal model.","PeriodicalId":415083,"journal":{"name":"International Conference on Bio-inspired Information and Communications Technologies","volume":"27 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-05-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116752131","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2016-05-24DOI: 10.4108/EAI.3-12-2015.2262447
T. Brosch, H. Neumann
Event-based sensing, i.e. the asynchronous detection of luminance changes, promises low-energy, high dynamic range, and sparse sensing. This stands in contrast to whole image frame-wise acquisition using standard cameras. Recently, we proposed a novel biologically inspired efficient motion detector for such event-based input streams and demonstrated how a canonical neural circuit can improve such representations using normalization and feedback. In this contribution, we suggest how such a motion detection scheme is defined by utilizing a canonical neural circuit corresponding to the resolution of cortical columns. In addition, we develop a mapping of key computational elements of this circuit model onto neuromorphic hardware. In particular, we focus on the recently developed TrueNorth chip architecture by IBM to realize a real-time, energy-efficient and adjustable neuromorphic optical flow detector. We demonstrate the function of the computations of the canonical model and its approximate neuromorphic realization.
{"title":"Event-based optical flow on neuromorphic hardware","authors":"T. Brosch, H. Neumann","doi":"10.4108/EAI.3-12-2015.2262447","DOIUrl":"https://doi.org/10.4108/EAI.3-12-2015.2262447","url":null,"abstract":"Event-based sensing, i.e. the asynchronous detection of luminance changes, promises low-energy, high dynamic range, and sparse sensing. This stands in contrast to whole image frame-wise acquisition using standard cameras. Recently, we proposed a novel biologically inspired efficient motion detector for such event-based input streams and demonstrated how a canonical neural circuit can improve such representations using normalization and feedback. In this contribution, we suggest how such a motion detection scheme is defined by utilizing a canonical neural circuit corresponding to the resolution of cortical columns. In addition, we develop a mapping of key computational elements of this circuit model onto neuromorphic hardware. In particular, we focus on the recently developed TrueNorth chip architecture by IBM to realize a real-time, energy-efficient and adjustable neuromorphic optical flow detector. We demonstrate the function of the computations of the canonical model and its approximate neuromorphic realization.","PeriodicalId":415083,"journal":{"name":"International Conference on Bio-inspired Information and Communications Technologies","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-05-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"115790483","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2016-05-24DOI: 10.4108/EAI.3-12-2015.2262469
M. Dirnberger, Tim Kehl, T. Mehlhorn, K. Mehlhorn, Adrian Neumann
We introduce the Slime Mold Graph Repository, a publicly available collection of pairs (I, G). Let I denote an image of P. polycephalum's signature network and G an equivalent weighted graph representation of I. To convert I to G we have developed a dedicated software called NEFI. Working with graphs makes data analysis using techniques from graph theory and network science straight-forward.
{"title":"Towards an open online repository of P. polycephalum networks and their corresponding graph representations","authors":"M. Dirnberger, Tim Kehl, T. Mehlhorn, K. Mehlhorn, Adrian Neumann","doi":"10.4108/EAI.3-12-2015.2262469","DOIUrl":"https://doi.org/10.4108/EAI.3-12-2015.2262469","url":null,"abstract":"We introduce the Slime Mold Graph Repository, a publicly available collection of pairs (I, G). Let I denote an image of P. polycephalum's signature network and G an equivalent weighted graph representation of I. To convert I to G we have developed a dedicated software called NEFI. \u0000 \u0000Working with graphs makes data analysis using techniques from graph theory and network science straight-forward.","PeriodicalId":415083,"journal":{"name":"International Conference on Bio-inspired Information and Communications Technologies","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-05-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"130896001","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2016-05-24DOI: 10.4108/EAI.3-12-2015.2262413
K. Alim, Gabriel Amselem, F. Peaudecerf, A. Pringle, M. Brenner
This extended abstract summarizes a contributed/invited presentation delivered at PhysNet 2015
这篇扩展摘要总结了在2015年PhysNet上发表的一个贡献/邀请演讲
{"title":"Adaptation of fluid flow in the slime mould Physarum polycephalum","authors":"K. Alim, Gabriel Amselem, F. Peaudecerf, A. Pringle, M. Brenner","doi":"10.4108/EAI.3-12-2015.2262413","DOIUrl":"https://doi.org/10.4108/EAI.3-12-2015.2262413","url":null,"abstract":"This extended abstract summarizes a contributed/invited presentation delivered at PhysNet 2015","PeriodicalId":415083,"journal":{"name":"International Conference on Bio-inspired Information and Communications Technologies","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-05-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"133265873","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2016-05-24DOI: 10.4108/eai.3-12-2015.2262534
Cristian Vidal, David Benavides, Paul Leger, J. Galindo, Hiroaki Fukuda
Feature-oriented programming (FOP) and aspect-oriented programming (AOP) focus are to modularize additional classes behavior and crosscutting concerns, respectively, for soft- ware evolution. So, these software development approaches represent advanced paradigms for modular software product lines development. Thereby, a FOP and AOP symbiosis would permit reaching pros and cons of both approaches. FOP allows developers to modularly refine classes collaboration for Software Product Lines (SPLs), an adequate approach to represent heterogeneous crosscutting concerns. Similarly, traditional AOP structurally modularizes in a re- fined manner homogeneous crosscutting concerns. Since traditional AOP presents implicit dependencies and strong coupling between classes and aspects, these AOP issues are solved by the Join Point Interface JPI approach. This article presents JPI Feature Modules for FOP + JPI SPL components modularization, i.e., classes, aspects, and join point interfaces along with their evolution, for a SPL transparent implementation in a FOP + JPI context. In addition, this article shows JPI Feature Modules of a case study to highlight mutual benefits of FOP and JPI approaches for a modular SPL software conception.
{"title":"Mixing of Join Point Interfaces and Feature-Oriented Programming for Modular Software Product Line","authors":"Cristian Vidal, David Benavides, Paul Leger, J. Galindo, Hiroaki Fukuda","doi":"10.4108/eai.3-12-2015.2262534","DOIUrl":"https://doi.org/10.4108/eai.3-12-2015.2262534","url":null,"abstract":"Feature-oriented programming (FOP) and aspect-oriented programming (AOP) focus are to modularize additional classes behavior and crosscutting concerns, respectively, for soft- ware evolution. So, these software development approaches represent advanced paradigms for modular software product lines development. Thereby, a FOP and AOP symbiosis would permit reaching pros and cons of both approaches. \u0000 \u0000FOP allows developers to modularly refine classes collaboration for Software Product Lines (SPLs), an adequate approach to represent heterogeneous crosscutting concerns. Similarly, traditional AOP structurally modularizes in a re- fined manner homogeneous crosscutting concerns. Since traditional AOP presents implicit dependencies and strong coupling between classes and aspects, these AOP issues are solved by the Join Point Interface JPI approach. This article presents JPI Feature Modules for FOP + JPI SPL components modularization, i.e., classes, aspects, and join point interfaces along with their evolution, for a SPL transparent implementation in a FOP + JPI context. In addition, this article shows JPI Feature Modules of a case study to highlight mutual benefits of FOP and JPI approaches for a modular SPL software conception.","PeriodicalId":415083,"journal":{"name":"International Conference on Bio-inspired Information and Communications Technologies","volume":"43 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-05-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"133293872","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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