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Multi-layer self-calibrated algorithm for transabdominal fetal pulse oximetry: simulation and in vivo validation. 经腹胎儿脉搏血氧测定的多层自校准算法:模拟和体内验证。
IF 8.4 Q1 OPTICS Pub Date : 2026-03-01 Epub Date: 2025-11-11 DOI: 10.1088/2515-7647/ae1a27
Jingyi Wu, Martin P Debreczeny, Nevan C Hanumara, Neil Ray, Baptiste Jayet, Stefan Andersson-Engels, Jana M Kainerstorfer

Transabdominal fetal pulse oximetry offers a promising approach to non-invasively monitor fetal arterial oxygen saturation (SaO2), potentially enhancing clinical decision-making and reducing unnecessary interventions during delivery. However, accurate estimation of fetal SaO2 (denoted as SpO2 when measured non-invasively) is complicated by the multi-layer maternal-fetal tissue structure, distinct maternal and fetal physiological signals, and inherently low fetal oxygen saturation levels. A multi-layer self-calibrated algorithm was developed by combining the multi-layer modified Beer-Lambert law with an analytical photon partial pathlength model. This approach distinguishes maternal and fetal tissue contributions, enabling more accurate fetal SpO2 estimation. Validation was performed using Monte Carlo photon simulations of multi-layer tissue geometries, where synthetic optical signals representing fetal cardiac pulsations were generated under two fetal depths and randomly varied maternal and fetal oxygen saturations and optical properties. Further validation was performed using in vivo sheep data, where fetal SpO2 values derived from transabdominal continuous-wave near-infrared spectroscopy measurements were compared against reference fetal SaO2 from CO-oximetry. In simulations, the algorithm achieved a mean absolute error (MAE) below 5% and a Pearson correlation coefficient (R) of 0.98 between estimated fetal SpO2 and ground truth fetal SaO2 when using optimal input parameters. In the sheep experiment, agreement with reference measurements was maintained (MAE = 10.3%, R = 0.91). However, algorithm performance was highly sensitive to accurate optical properties and tissue layer thicknesses inputs, which may be challenging to obtain in clinical settings. These results demonstrate proof-of-concept feasibility for the multi-layer self-calibrated algorithm in both simulated and in vivo conditions. While further refinement, particularly in optical property estimation and fetal depths in human pregnancies, is necessary, this work provides a foundational framework for the future clinical translation of non-invasive fetal SpO2 monitoring.

经腹胎儿脉搏血氧仪为无创监测胎儿动脉血氧饱和度(SaO2)提供了一种很有前途的方法,有可能增强临床决策并减少分娩过程中不必要的干预。然而,准确估计胎儿SaO2(无创测量时以SpO2表示)由于母胎多层组织结构、母胎生理信号不同以及胎儿固有的低氧饱和度水平而变得复杂。将多层修正的比尔-朗伯定律与解析光子部分路径长度模型相结合,提出了一种多层自校准算法。这种方法区分了母体和胎儿组织的贡献,使胎儿SpO2的估计更准确。利用蒙特卡罗多层组织几何光子模拟进行验证,在两个胎儿深度和随机变化的母体和胎儿氧饱和度和光性质下,生成代表胎儿心脏脉动的合成光信号。使用绵羊体内数据进行进一步验证,将经腹连续波近红外光谱测量的胎儿SpO2值与co -氧饱和度测定的参考胎儿SaO2值进行比较。在仿真中,该算法在使用最优输入参数时,估计胎儿SpO2与真实胎儿SaO2之间的平均绝对误差(MAE)低于5%,Pearson相关系数(R)为0.98。在绵羊实验中,与参考测量值保持一致(MAE = 10.3%, R = 0.91)。然而,算法性能对精确的光学特性和组织层厚度输入高度敏感,这在临床环境中可能难以获得。这些结果证明了多层自校准算法在模拟和体内条件下的概念可行性。虽然进一步的改进,特别是在人类妊娠的光学性质估计和胎儿深度方面,是必要的,但这项工作为未来无创胎儿SpO2监测的临床应用提供了基础框架。
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引用次数: 0
Isolating subsurface fluorescence in macroscopic lifetime imaging via high-spatial-frequency structured illumination. 高空间频率结构照明在宏观寿命成像中分离亚表面荧光。
IF 8.4 Q1 OPTICS Pub Date : 2025-10-31 Epub Date: 2025-10-06 DOI: 10.1088/2515-7647/ae0aa1
Nanxue Yuan, Saif Ragab, Navid Nizam, Vikas Pandey, Amit Verma, Tynan Young, John Williams, Margarida Barroso, Xavier Intes

Macroscopic fluorescence lifetime imaging (MFLI) has emerged as a robust, non-invasive imaging technique offering quantitative insights into physiological and molecular processes within live tissues, independent of fluorophore concentration, excitation intensity, or signal attenuation. However, a key limitation is the inability to accurately determine the depth at which fluorescence signals originate, potentially compromising biological interpretation due to ambiguous localization. In this study, we introduce high spatial frequency-fluorescence lifetime imaging (HSF-FLI), an innovative optical correction methodology designed to effectively eliminate surface signal bias, such as those arising from skin in preclinical imaging, without requiring chemical clearing agents. We develop a modulation transfer function linking spatial frequency with signal penetration depth through comprehensive Monte Carlo eXtreme simulations. Utilizing structured, three-phase sinusoidal illumination, fluorescence signals were accurately decomposed into distinct surface and subsurface components. Experimental validation was performed using agar-based capillary phantoms and a time-gated intensified charged coupled device coupled with a digital micromirror device imaging system. Further demonstrating its practical utility, we successfully applied HSF-FLI to preclinical drug delivery assessments employing Förster resonance energy transfer MFLI. The method was rigorously validated in vivo using mouse tumor xenograft models and cross-validated through ex vivo analyses. Overall, by integrating structure illumination techniques with physics-based depth modeling, HSF-FLI achieves precise depth-selective FLI. This advancement significantly enhances the accuracy, biological interpretation, and applicability of FLI, positioning HSF-FLI as a valuable tool for translational research.

宏观荧光寿命成像(MFLI)已经成为一种强大的、非侵入性的成像技术,可以定量地了解活体组织内的生理和分子过程,不受荧光团浓度、激发强度或信号衰减的影响。然而,一个关键的限制是无法准确确定荧光信号起源的深度,由于定位不明确,可能会损害生物学解释。在这项研究中,我们引入了高空间频率荧光寿命成像(HSF-FLI),这是一种创新的光学校正方法,旨在有效消除临床前成像中皮肤产生的表面信号偏差,而不需要化学清除剂。通过全面的蒙特卡罗极限模拟,我们开发了一个连接空间频率和信号穿透深度的调制传递函数。利用结构化的三相正弦照明,将荧光信号精确地分解为不同的表面和次表面分量。实验验证采用琼脂基毛细管幻影和时间门控强化电荷耦合器件耦合数字微镜器件成像系统。我们利用Förster共振能量转移MFLI成功地将HSF-FLI应用于临床前给药评估,进一步证明了其实用性。该方法在体内通过小鼠肿瘤异种移植模型进行了严格验证,并通过离体分析进行了交叉验证。总体而言,通过将结构照明技术与基于物理的深度建模相结合,HSF-FLI实现了精确的深度选择FLI。这一进展显著提高了FLI的准确性、生物学解释和适用性,使HSF-FLI成为翻译研究的宝贵工具。
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引用次数: 0
Recent advancements in molecular photoacoustic tomography. 分子光声断层成像技术的最新进展。
IF 8.4 Q1 OPTICS Pub Date : 2025-07-31 Epub Date: 2025-07-28 DOI: 10.1088/2515-7647/adf167
Eric Hall, Chengyun Tang, Lei Li

Photoacoustic tomography (PAT) is an emerging biomedical imaging technology that combines the molecular sensitivity of optical imaging with the spatial resolution of ultrasonic imaging in deep tissue. Molecular PAT, a subset of PAT, takes advantage of the specific absorption of molecules to reveal tissue structures, functions, and dynamics. Thanks to the high sensitivity to the optical absorption of molecules, PAT can selectively image those molecules by tuning the excitation wavelength to each target's optical absorption signature. PAT has imaged various molecular targets in vivo, ranging from endogenous chromophores, e.g. hemoglobin, melanin, and lipids, to specialized exogenous contrasts such as organic dyes, genetically encoded proteins, and nano/microparticles. Each molecular contrast hosts inherent advantages. Endogenous contrasts allow for truly noninvasive imaging but cannot attain high specificity or sensitivity for many biological processes, whereas artificial exogenous contrasts can. Recent advances in imaging these contrast agents have shown the immense potential of photoacoustic imaging for diagnosing, monitoring, and treating medical conditions, along with studying the fundamental processes in vivo.

光声成像(PAT)是一种新兴的生物医学成像技术,它结合了光学成像的分子灵敏度和超声成像在深层组织中的空间分辨率。分子PAT是PAT的一个子集,利用分子的特异性吸收来揭示组织结构、功能和动力学。由于对分子光学吸收的高灵敏度,PAT可以通过将激发波长调整到每个目标的光学吸收特征来选择性地对这些分子进行成像。PAT已经在体内成像了各种分子靶点,从内源性发色团,如血红蛋白、黑色素和脂质,到专门的外源性对比,如有机染料、遗传编码蛋白质和纳米/微粒。每一种分子对比物都有其固有的优势。内源性对比可以实现真正的无创成像,但不能达到许多生物过程的高特异性或敏感性,而人工外源性对比可以。造影剂成像的最新进展表明,光声成像在诊断、监测和治疗医疗状况以及研究体内基本过程方面具有巨大潜力。
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引用次数: 0
Pointwise prediction of protein diffusive properties using machine learning. 利用机器学习对蛋白质扩散特性进行逐点预测。
IF 4.6 Q1 OPTICS Pub Date : 2025-07-31 Epub Date: 2025-07-17 DOI: 10.1088/2515-7647/adede9
Rasched Haidari, Achillefs N Kapanidis

The understanding of cellular mechanisms benefits substantially from accurate determination of protein diffusive properties. Prior work in this field primarily focuses on traditional methods, such as mean square displacements, for calculation of protein diffusion coefficients and biological states. This proves difficult and error-prone for proteins undergoing heterogeneous behaviour, particularly in complex environments, limiting the exploration of new biological behaviours. The importance of determining protein diffusion coefficients, anomalous exponents, and biological behaviours led to the Anomalous Diffusion Challenge 2024, exploring machine learning methods to infer these variables in heterogeneous trajectories with time-dependent changepoints. In response to the challenge, we present M3, a machine learning method for pointwise inference of diffusive coefficients, anomalous exponents, and states along noisy heterogenous protein trajectories. M3 makes use of long short-term memory cells to achieve small mean absolute errors for the diffusion coefficient and anomalous exponent alongside high state accuracies (>90%). Subsequently, we implement changepoint detection to determine timepoints at which protein behaviour changes. M3 removes the need for expert fine-tuning required in most conventional statistical methods while being computationally inexpensive to train. The model finished in the Top 5 of the Anomalous Diffusive Challenge 2024, with small improvements made since challenge closure.

准确测定蛋白质的扩散特性对细胞机制的理解大有裨益。该领域先前的工作主要集中在传统方法上,如均方位移,用于计算蛋白质扩散系数和生物状态。事实证明,对于经历异质行为的蛋白质,特别是在复杂的环境中,这是困难和容易出错的,限制了对新的生物行为的探索。确定蛋白质扩散系数、异常指数和生物行为的重要性导致了2024年异常扩散挑战,探索机器学习方法来推断具有时间依赖性变化点的异质轨迹中的这些变量。为了应对这一挑战,我们提出了M3,这是一种机器学习方法,用于沿噪声异质蛋白质轨迹对扩散系数、异常指数和状态进行点向推断。M3利用长短期记忆单元来实现扩散系数和异常指数的小平均绝对误差以及高状态精度(>90%)。随后,我们实现了变化点检测,以确定蛋白质行为发生变化的时间点。M3消除了对大多数传统统计方法所需的专家微调的需要,同时计算成本低廉。该模型在2024年异常扩散挑战中排名前5,自挑战结束以来进行了小幅改进。
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引用次数: 0
High-resolution multi-modal imaging of sub-cellular structures with low numerical aperture objective. 小数值孔径物镜下亚细胞结构的高分辨率多模态成像。
IF 8.4 Q1 OPTICS Pub Date : 2025-04-30 Epub Date: 2025-03-25 DOI: 10.1088/2515-7647/adc04f
Somaiyeh Khoubafarin, Peuli Nath, Saloni Malla, Durgesh Desai, William D Gorgas, Amit K Tiwari, Aniruddha Ray

Imaging of subcellular structures, which underpins many of the advances in biological and medical sciences, requires microscopes with high numerical aperture (N.A.) objectives which are costly, complex, requires oil immersion and have very limited field-of-view, typically covering a handful of cells. Here, we leverage a low N.A. objective to simultaneously capture scattering, phase, and fluorescence images of subcellular structures in breast cancer cells (BT-20) and observe nanoparticle uptake, with sub-diffraction-limited resolution (<400 nm with a 0.25 N.A. objective) utilizing a 2-dimensional (2-D) microlens substrate. High resolution labeled and label-free images of subcellular components is made possible by implementing a specific configuration, wherein the sample is placed in close proximity to the microlens substrate, which results in efficient collection of the rapidly decaying evanescent waves that contains the high frequency information, thereby improving resolution and the light capture efficiency. The microlens-assisted imaging provides an easy-to-implement and cost-effective means of drastically improving the resolution of any microscope with low N.A. objective lenses, paving the way for the development of affordable, portable multi-modal imaging systems with high-resolution imaging capabilities. This technology has broad implications for various fields and could democratize access to high-quality microscopy, particularly for application in resource-limited settings.

亚细胞结构的成像是生物和医学科学的许多进步的基础,它需要具有高数值孔径物镜的显微镜,这些物镜昂贵、复杂、需要油浸并且视野非常有限,通常只能覆盖少数细胞。在这里,我们利用低na物镜同时捕获乳腺癌细胞(BT-20)中亚细胞结构的散射、相位和荧光图像,并以亚衍射限制分辨率观察纳米颗粒摄取(
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引用次数: 0
Wavefront shaping simulations with augmented partial factorization 利用增强偏因式进行波阵面整形模拟
IF 3.8 Q1 OPTICS Pub Date : 2024-09-15 DOI: 10.1088/2515-7647/ad68df
Ho-Chun Lin, Zeyu Wang and Chia Wei Hsu
Wavefront shaping can tailor multipath interference to control multiple scattering of waves in complex optical systems. However, full-wave simulations that capture multiple scattering are computationally demanding given the large system size and the large number of input channels. Recently, an ‘augmented partial factorization’ (APF) method was proposed to significantly speed-up such full-wave simulations. In this tutorial, we illustrate how to perform wavefront shaping simulations with the APF method using the open-source frequency-domain electromagnetic scattering solver MESTI. We present the foundational concepts and then walk through four examples: computing the scattering matrix of a slab with random permittivities, open high-transmission channels through disorder, focusing inside disorder with phase conjugation, and reflection matrix computation in a spatial focused-beam basis. The goal is to lower the barrier for researchers to use simulations to explore the rich phenomena enabled by wavefront shaping.
波前整形可以调整多径干扰,控制复杂光学系统中的多重散射。然而,由于系统规模大、输入通道多,捕捉多重散射的全波模拟计算要求很高。最近,有人提出了一种 "增强偏因式分解"(APF)方法,可显著加快这种全波模拟的速度。在本教程中,我们将说明如何使用开源频域电磁散射求解器 MESTI,利用 APF 方法执行波前整形仿真。我们将介绍基本概念,然后通过四个示例进行说明:计算具有随机介电常数的板的散射矩阵、通过无序打开高传输通道、利用相位共轭在无序内部聚焦,以及在空间聚焦光束基础上计算反射矩阵。目的是降低研究人员使用模拟来探索波前整形所带来的丰富现象的门槛。
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引用次数: 0
An efficient compact blazed grating antenna for optical phased arrays 用于光学相控阵的高效紧凑型炽光栅天线
IF 3.8 Q1 OPTICS Pub Date : 2024-09-02 DOI: 10.1088/2515-7647/ad6ed4
Henna Farheen, Suraj Joshi, J Christoph Scheytt, Viktor Myroshnychenko, Jens Förstner
Phased arrays are vital in communication systems and have received significant interest in the field of optoelectronics and photonics, enabling a wide range of applications such as LiDAR, holography, and wireless communication. In this work, we present a blazed grating antenna that is optimized to have upward radiation efficiency as high as 80% with a compact footprint of 3.5 µm × 2 µm at an operational wavelength of 1.55 µm. Our numerical investigations demonstrate that this antenna in a 64×64 phased array configuration is capable of producing desired far-field radiation patterns. Additionally, our antenna possesses a low side lobe level of −9.7 dB and a negligible reflection efficiency of under 1%, making it an attractive candidate for integrated optical phased arrays.
相控阵在通信系统中至关重要,在光电子学和光子学领域备受关注,可广泛应用于激光雷达、全息摄影和无线通信等领域。在这项工作中,我们提出了一种经过优化的炽热光栅天线,在工作波长为 1.55 µm 时,向上辐射效率高达 80%,占地面积仅为 3.5 µm × 2 µm。我们的数值研究表明,这种天线在 64×64 相控阵配置中能够产生理想的远场辐射模式。此外,我们的天线还具有-9.7 dB的低侧波水平和低于1%的可忽略反射效率,使其成为集成光学相控阵的理想候选天线。
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引用次数: 0
Highly reflective and high-Q thin resonant subwavelength gratings 高反射和高 Q 值薄型谐振亚波长光栅
IF 3.8 Q1 OPTICS Pub Date : 2024-08-27 DOI: 10.1088/2515-7647/ad70e7
Gurpreet Singh, Trishala Mitra, Søren P Madsen, Aurélien Dantan
We theoretically investigate the design of thin subwavelength gratings possessing high-reflectivity and high-Q resonances when illuminated at normal incidence by a Gaussian beam. We compare the performances of single-period and dual-period rectangular gratings using finite element method-based optimization and predict a close to two orders of magnitude improvement (×90) in their transmission loss-linewidth product, which is the relevant figure of merit for e.g. resonant mirror-based microcavity applications.
我们从理论上研究了薄亚波长光栅的设计,当高斯光束法线入射时,光栅具有高反射率和高Q值共振。我们使用基于有限元法的优化方法比较了单周期和双周期矩形光栅的性能,并预测它们的传输损耗线宽乘积可提高近两个数量级(×90),而这正是基于谐振镜的微腔等应用的相关优点。
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引用次数: 0
A modular GUI-based program for genetic algorithm-based feedback-assisted wavefront shaping 基于遗传算法的反馈辅助波前整形模块化图形用户界面程序
IF 3.8 Q1 OPTICS Pub Date : 2024-08-23 DOI: 10.1088/2515-7647/ad6ed3
Benjamin R Anderson, Andrew O’Kins, Kostiantyn Makrasnov, Rebecca Udby, Patrick Price, Hergen Eilers
We have developed a modular graphical user interface (GUI)-based program for use in genetic algorithm-based feedback-assisted wavefront shaping. The program uses a class-based structure to separate out the universal modules (e.g. GUI, multithreading, optimization algorithms) and hardware-specific modules (e.g. code for different SLMs and cameras). This modular design makes the program easily adaptable to a wide range of lab equipment, while providing easy access to a GUI, multithreading, and three optimization algorithms (phase-stepping, simple genetic, and microgenetic).
我们开发了一个基于图形用户界面(GUI)的模块化程序,用于基于遗传算法的反馈辅助波前整形。程序采用基于类的结构,将通用模块(如图形用户界面、多线程、优化算法)和特定硬件模块(如不同 SLM 和相机的代码)分开。这种模块化设计使程序能轻松适应各种实验室设备,同时还能方便地访问图形用户界面、多线程和三种优化算法(相位步进、简单遗传和微遗传)。
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引用次数: 0
A practical guide to digital micro-mirror devices (DMDs) for wavefront shaping 用于波前整形的数字微镜设备 (DMD) 实用指南
IF 3.8 Q1 OPTICS Pub Date : 2024-08-23 DOI: 10.1088/2515-7647/ad6dc0
Sébastien M Popoff, Rodrigo Gutiérrez-Cuevas, Yaron Bromberg, Maxime W Matthés
Digital micromirror devices have gained popularity in wavefront shaping, offering a high frame rate alternative to liquid crystal spatial light modulators. They are relatively inexpensive, offer high resolution, are easy to operate, and a single device can be used in a broad optical bandwidth. However, some technical drawbacks must be considered to achieve optimal performance. These issues, often undocumented by manufacturers, mostly stem from the device’s original design for video projection applications. Herein, we present a guide to characterize and mitigate these effects. Our focus is on providing simple and practical solutions that can be easily incorporated into a typical wavefront shaping setup.
数字微镜设备在波前整形领域越来越受欢迎,为液晶空间光调制器提供了一种高帧速率的替代方案。它们价格相对低廉、分辨率高、操作简便,而且单个设备可用于宽广的光带宽。然而,要实现最佳性能,必须考虑一些技术缺陷。这些问题通常未被制造商记录在案,主要源于设备最初设计用于视频投影应用。在此,我们将提供一份指南,用于描述和减轻这些影响。我们的重点是提供简单实用的解决方案,这些解决方案可以很容易地集成到典型的波前整形设置中。
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引用次数: 0
期刊
Journal of Physics-Photonics
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