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Early detection of tuberculosis: a systematic review. 结核病的早期检测:系统回顾。
IF 8.5 Q1 RESPIRATORY SYSTEM Pub Date : 2024-07-05 DOI: 10.1186/s41479-024-00133-z
Josef Yayan, Karl-Josef Franke, Melanie Berger, Wolfram Windisch, Kurt Rasche

Tuberculosis remains a significant global health challenge. Tuberculosis affects millions of individuals worldwide. Early detection of tuberculosis plays a relevant role in the management of treatment of tuberculosis. This systematic review will analyze the findings of several published studies on the topic of the early detection of tuberculosis. This systematic review highlights their methodologies and limitations as well as their contributions to our understanding of this pressing issue. Early detection of tuberculosis can be achieved through tuberculosis screening for contacts. Comprehensive health education for household contacts can be used as early detection. The in-house deep learning models can be used in the X-ray used for automatic detection of tuberculosis. Interferon gamma release assay, routine passive and active case detection, portable X-ray and nucleic acid amplification testing, and highly sensitive enzyme-linked immunosorbent assay tests play critical roles in improving tuberculosis detection.

结核病仍然是全球健康面临的重大挑战。结核病影响着全球数百万人。结核病的早期发现在结核病的治疗管理中发挥着重要作用。本系统综述将分析已发表的几项关于结核病早期检测主题的研究结果。本系统综述将重点介绍这些研究的方法和局限性,以及它们对我们了解这一紧迫问题所做的贡献。结核病的早期发现可以通过对接触者进行结核病筛查来实现。针对家庭接触者的全面健康教育可作为早期检测手段。内部深度学习模型可用于自动检测结核病的 X 射线。伽马干扰素释放检测、常规被动和主动病例检测、便携式 X 射线和核酸扩增检测以及高灵敏度酶联免疫吸附检测在改进结核病检测方面发挥着至关重要的作用。
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引用次数: 0
Obtaining patient phenotypes in SARS-CoV-2 pneumonia, and their association with clinical severity and mortality. 获取 SARS-CoV-2 肺炎患者的表型及其与临床严重程度和死亡率的关系。
IF 8.5 Q1 RESPIRATORY SYSTEM Pub Date : 2024-06-25 DOI: 10.1186/s41479-024-00132-0
Fernando García-García, Dae-Jin Lee, Mónica Nieves-Ermecheo, Olaia Bronte, Pedro Pablo España, José María Quintana, Rosario Menéndez, Antoni Torres, Luis Alberto Ruiz Iturriaga, Isabel Urrutia
<p><strong>Background: </strong>There exists consistent empirical evidence in the literature pointing out ample heterogeneity in terms of the clinical evolution of patients with COVID-19. The identification of specific phenotypes underlying in the population might contribute towards a better understanding and characterization of the different courses of the disease. The aim of this study was to identify distinct clinical phenotypes among hospitalized patients with SARS-CoV-2 pneumonia using machine learning clustering, and to study their association with subsequent clinical outcomes as severity and mortality.</p><p><strong>Methods: </strong>Multicentric observational, prospective, longitudinal, cohort study conducted in four hospitals in Spain. We included adult patients admitted for in-hospital stay due to SARS-CoV-2 pneumonia. We collected a broad spectrum of variables to describe exhaustively each case: patient demographics, comorbidities, symptoms, physiological status, baseline examinations (blood analytics, arterial gas test), etc. For the development and internal validation of the clustering/phenotype models, the dataset was split into training and test sets (50% each). We proposed a sequence of machine learning stages: feature scaling, missing data imputation, reduction of data dimensionality via Kernel Principal Component Analysis (KPCA), and clustering with the k-means algorithm. The optimal cluster model parameters -including k, the number of phenotypes- were chosen automatically, by maximizing the average Silhouette score across the training set.</p><p><strong>Results: </strong>We enrolled 1548 patients, each of them characterized by 92 clinical attributes (d=109 features after variable encoding). Our clustering algorithm identified k=3 distinct phenotypes and 18 strongly informative variables: Phenotype A (788 cases [50.9% prevalence] - age <math><mo>∼</mo></math> 57, Charlson comorbidity <math><mo>∼</mo></math> 1, pneumonia CURB-65 score <math><mo>∼</mo></math> 0 to 1, respiratory rate at admission <math><mo>∼</mo></math> 18 min<sup>-1</sup>, FiO<sub>2</sub> <math><mo>∼</mo></math> 21%, C-reactive protein CRP <math><mo>∼</mo></math> 49.5 mg/dL [median within cluster]); phenotype B (620 cases [40.0%] - age <math><mo>∼</mo></math> 75, Charlson <math><mo>∼</mo></math> 5, CURB-65 <math><mo>∼</mo></math> 1 to 2, respiration <math><mo>∼</mo></math> 20 min<sup>-1</sup>, FiO<sub>2</sub> <math><mo>∼</mo></math> 21%, CRP <math><mo>∼</mo></math> 101.5 mg/dL); and phenotype C (140 cases [9.0%] - age <math><mo>∼</mo></math> 71, Charlson <math><mo>∼</mo></math> 4, CURB-65 <math><mo>∼</mo></math> 0 to 2, respiration <math><mo>∼</mo></math> 30 min<sup>-1</sup>, FiO<sub>2</sub> <math><mo>∼</mo></math> 38%, CRP <math><mo>∼</mo></math> 152.3 mg/dL). Hypothesis testing provided solid statistical evidence supporting an interaction between phenotype and each clinical outcome: severity and mortality. By computing their corresponding odds ratios, a clear t
背景:文献中有一致的实证证据表明,COVID-19 患者的临床演变具有很大的异质性。确定人群中潜在的特定表型可能有助于更好地理解和描述该疾病的不同病程。本研究的目的是利用机器学习聚类方法在住院的 SARS-CoV-2 肺炎患者中识别出不同的临床表型,并研究它们与随后的临床结果(如严重程度和死亡率)之间的关系:在西班牙四家医院开展的多中心观察性、前瞻性、纵向队列研究。研究对象包括因 SARS-CoV-2 肺炎住院的成年患者。我们收集了大量变量,以详尽描述每个病例:患者的人口统计学特征、合并症、症状、生理状态、基线检查(血液分析、动脉气体测试)等。为了开发和内部验证聚类/表型模型,数据集被分成训练集和测试集(各占 50%)。我们提出了一系列机器学习阶段:特征缩放、缺失数据估算、通过核主成分分析(KPCA)降低数据维度,以及使用 k-means 算法进行聚类。通过最大化整个训练集的平均 Silhouette 分数,自动选择最佳聚类模型参数(包括表型数量 k):我们招募了 1548 名患者,每名患者都有 92 个临床属性(变量编码后为 109 个特征)。我们的聚类算法确定了 k=3 个不同的表型和 18 个强信息变量:表型 A(788 例 [50.9% 患病率] - 年龄 ∼ 57 岁,Charlson 合并症 ∼ 1,肺炎 CURB-65 评分 ∼ 0 至 1,入院时呼吸频率 ∼ 18 min-1,FiO2 ∼ 21%,C 反应蛋白 CRP ∼ 49.5 mg/dL [聚类内中位数]);表型 B(620 例 [40.0%] - 年龄 ∼ 75 岁,Charlson ∼ 5 岁,CURB-65 ∼ 1 至 2 岁,呼吸频率 ∼ 20 min-1,FiO2 ∼ 21%,CRP ∼ 101.5 mg/dL);表型 C(140 例 [9.0%]-年龄 ∼ 71,Charlson ∼ 4,CURB-65 ∼ 0 至 2,呼吸 ∼ 30 min-1,FiO2 ∼ 38%,CRP ∼ 152.3 mg/dL)。假设检验提供了可靠的统计证据,证明表型与严重程度和死亡率这两个临床结果之间存在相互作用。通过计算相应的几率比,我们发现一个明显的趋势,即表型 C 的不利演变频率高于表型 B,表型 B 的不利演变频率也高于表型 A:复合无监督聚类技术(包括对其内部参数的全自动优化)揭示了存在三个不同的患者群体--表型。反过来,这些表型又与肺炎进展的临床严重程度和死亡率密切相关。
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引用次数: 0
Back to the future: the novel art of digital auscultation applied in a prospective observational study of critically ill Covid-19 patients. 回到未来:数字听诊新技术在危重病人 Covid-19 前瞻性观察研究中的应用。
IF 6.8 Q1 RESPIRATORY SYSTEM Pub Date : 2024-06-05 DOI: 10.1186/s41479-024-00131-1
Evangelos Kaimakamis, Serafeim Kotoulas, Myrto Tzimou, Christos Karachristos, Chrysavgi Giannaki, Vassileios Kilintzis, Leandros Stefanopoulos, Evangelos Chatzis, Nikolaos Beredimas, Bruno Rocha, Diogo Pessoa, Rui Pedro Paiva, Nicos Maglaveras, Militsa Bitzani

Background: The Covid-19 pandemic has caused immense pressure on Intensive Care Units (ICU). In patients with severe ARDS due to Covid-19, respiratory mechanics are important for determining the severity of lung damage. Lung auscultation could not be used during the pandemic despite its merit. The main objective of this study was to investigate associations between lung auscultatory sound features and lung mechanical properties, length of stay (LOS) and survival, in adults with severe Covid-19 ARDS.

Methods: Consecutive patients admitted to a large ICU between 2020 and 2021 (n = 173) were included. Digital stethoscopes obtained auscultatory sounds and stored them in an on-line database for replay and further processing using advanced AI techniques. Correlation and regression analysis explored relationships between digital auscultation findings and lung mechanics or the ICU outcome. The resulting annotated lung sounds database is also publicly available as supplementary material.

Results: The presence of squawks was associated with the ICU LOS, outcome and 90-day mortality. Other features (age, SOFA score & oxygenation index upon admission, minimum crackle entropy) had significant impact on outcome. Additional features affecting the 90-d survival were age and mean crackle entropy. Multivariate logistic regression showed that survival was affected by age, baseline SOFA, baseline oxygenation index and minimum crackle entropy.

Conclusions: Respiratory mechanics were associated with various adventitious sounds, whereas the lung sound analytics and the presence of certain adventitious sounds correlated with the ICU outcome and the 90-d survival. Spectral features of crackles sounds can serve as prognostic factors for survival, highlighting the importance of digital auscultation.

背景:Covid-19 大流行给重症监护病房(ICU)造成了巨大压力。对于因 Covid-19 而导致严重 ARDS 的患者,呼吸力学对于确定肺损伤的严重程度非常重要。尽管肺部听诊有其优点,但在大流行期间却无法使用。本研究的主要目的是调查严重 Covid-19 ARDS 成人患者的肺部听诊声音特征与肺部机械特性、住院时间(LOS)和存活率之间的关系:方法:纳入 2020 年至 2021 年期间入住大型重症监护病房的连续患者(n = 173)。数字听诊器获取听诊音,并将其存储到在线数据库中,以便重放和使用先进的人工智能技术进一步处理。相关性和回归分析探讨了数字听诊结果与肺力学或重症监护室结果之间的关系。由此产生的肺部声音注释数据库也作为补充材料公开发布:结果:"唧唧 "声的存在与重症监护室的住院时间、预后和 90 天死亡率有关。其他特征(年龄、入院时的 SOFA 评分和氧合指数、最小噼啪熵)对结果有显著影响。影响 90 天存活率的其他特征还有年龄和平均噼啪熵。多变量逻辑回归显示,年龄、基线SOFA、基线氧合指数和最小噼啪熵对存活率有影响:结论:呼吸力学与各种杂音有关,而肺部声音分析和某些杂音的存在与重症监护室的结果和 90 天存活率相关。噼啪声的频谱特征可作为生存率的预后因素,突出了数字听诊的重要性。
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引用次数: 0
Invasive pulmonary aspergillosis among patients with severe community-acquired pneumonia and influenza in ICUs: a retrospective cohort study. 重症监护病房重症社区获得性肺炎和流感患者中的侵袭性肺曲霉菌病:一项回顾性队列研究。
IF 6.8 Q1 RESPIRATORY SYSTEM Pub Date : 2024-05-25 DOI: 10.1186/s41479-024-00129-9
Wei-Chun Lee, Che-Chia Chang, Meng-Chin Ho, Chieh-Mo Lin, Shaw-Woei Leu, Chin-Kuo Lin, Yu-Hung Fang, Shu-Yi Huang, Yu-Ching Lin, Min-Chun Chuang, Tsung-Ming Yang, Ming-Szu Hung, Yen-Li Chou, Ying-Huang Tsai, Meng-Jer Hsieh

Rationale: The prevalence, clinical characteristics, and outcomes of invasive pulmonary aspergillosis in patients with severe community-acquired pneumonia (CAP) in intensive care units remain underestimated because of the lack of a disease-recognition scheme and the inadequacy of diagnostic tests.

Objectives: To identify the prevalence, risk factors, and outcomes of severe CAP complicated with invasive pulmonary aspergillosis (IPA) in intensive care units (ICUs).

Methods: We conducted a retrospective cohort study including recruited 311 ICU-hospitalized patients with severe CAP without influenza or with influenza. Bronchoalveolar lavage fluid (BALF) samples were from all patients and subjected to mycological testing. Patients were categorized as having proven or probable Aspergillus infection using a modified form of the AspICU algorithm comprising clinical, radiological, and mycological criteria.

Measurements and main results: Of the 252 patients with severe CAP and 59 influenza patients evaluated, 24 met the diagnostic criteria for proven or probable Aspergillus infection in the CAP group and 9 patients in the influenza group, giving estimated prevalence values of 9.5% and 15.3%, respectively. COPD and the use of inhaled corticosteroids were independent risk factors for IPA. IPA in patients with severe CAP was significantly associated with the duration of mechanical support, the length of ICU stay, and the 28-day mortality.

Conclusions: An aggressive diagnostic approach for IPA patients with severe CAP and not only influenza or COVID-19 should be pursued. Further randomized controlled trials need to evaluate the timing, safety, and efficacy of antifungal therapy in reducing IPA incidence and improving clinical outcomes.

理由:由于缺乏疾病识别方案以及诊断测试的不足,重症监护病房重症社区获得性肺炎(CAP)患者中侵袭性肺曲霉菌病的发病率、临床特征和预后仍被低估:目的:确定重症监护病房(ICU)中并发侵袭性肺曲霉菌病(IPA)的重症CAP的发病率、风险因素和预后:我们进行了一项回顾性队列研究,共招募了 311 名重症监护病房住院的重症 CAP 患者,这些患者既没有患流感,也没有患流感。对所有患者的支气管肺泡灌洗液(BALF)样本进行了真菌学检测。采用改良版的 AspICU 算法(包括临床、放射学和霉菌学标准),将患者分为已证实或可能感染曲霉菌:在接受评估的 252 名重症 CAP 患者和 59 名流感患者中,CAP 组有 24 人符合证实或可能感染曲霉菌的诊断标准,流感组有 9 人,估计感染率分别为 9.5% 和 15.3%。慢性阻塞性肺病和吸入皮质类固醇是导致 IPA 的独立风险因素。重症CAP患者的IPA与机械支持的持续时间、重症监护室的住院时间和28天的死亡率有显著相关性:结论:对于患有重症 CAP 的 IPA 患者,应采取积极的诊断方法,而不仅仅是流感或 COVID-19。需要进一步开展随机对照试验,评估抗真菌治疗在降低 IPA 发病率和改善临床预后方面的时机、安全性和有效性。
{"title":"Invasive pulmonary aspergillosis among patients with severe community-acquired pneumonia and influenza in ICUs: a retrospective cohort study.","authors":"Wei-Chun Lee, Che-Chia Chang, Meng-Chin Ho, Chieh-Mo Lin, Shaw-Woei Leu, Chin-Kuo Lin, Yu-Hung Fang, Shu-Yi Huang, Yu-Ching Lin, Min-Chun Chuang, Tsung-Ming Yang, Ming-Szu Hung, Yen-Li Chou, Ying-Huang Tsai, Meng-Jer Hsieh","doi":"10.1186/s41479-024-00129-9","DOIUrl":"10.1186/s41479-024-00129-9","url":null,"abstract":"<p><strong>Rationale: </strong>The prevalence, clinical characteristics, and outcomes of invasive pulmonary aspergillosis in patients with severe community-acquired pneumonia (CAP) in intensive care units remain underestimated because of the lack of a disease-recognition scheme and the inadequacy of diagnostic tests.</p><p><strong>Objectives: </strong>To identify the prevalence, risk factors, and outcomes of severe CAP complicated with invasive pulmonary aspergillosis (IPA) in intensive care units (ICUs).</p><p><strong>Methods: </strong>We conducted a retrospective cohort study including recruited 311 ICU-hospitalized patients with severe CAP without influenza or with influenza. Bronchoalveolar lavage fluid (BALF) samples were from all patients and subjected to mycological testing. Patients were categorized as having proven or probable Aspergillus infection using a modified form of the AspICU algorithm comprising clinical, radiological, and mycological criteria.</p><p><strong>Measurements and main results: </strong>Of the 252 patients with severe CAP and 59 influenza patients evaluated, 24 met the diagnostic criteria for proven or probable Aspergillus infection in the CAP group and 9 patients in the influenza group, giving estimated prevalence values of 9.5% and 15.3%, respectively. COPD and the use of inhaled corticosteroids were independent risk factors for IPA. IPA in patients with severe CAP was significantly associated with the duration of mechanical support, the length of ICU stay, and the 28-day mortality.</p><p><strong>Conclusions: </strong>An aggressive diagnostic approach for IPA patients with severe CAP and not only influenza or COVID-19 should be pursued. Further randomized controlled trials need to evaluate the timing, safety, and efficacy of antifungal therapy in reducing IPA incidence and improving clinical outcomes.</p>","PeriodicalId":45120,"journal":{"name":"Pneumonia","volume":"16 1","pages":"10"},"PeriodicalIF":6.8,"publicationDate":"2024-05-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11127357/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141094531","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Accuracy of the recording of pneumonia events in English electronic healthcare record data in patients with chronic obstructive pulmonary disease. 慢性阻塞性肺病患者的英语电子医疗记录数据中肺炎事件记录的准确性。
IF 6.8 Q1 RESPIRATORY SYSTEM Pub Date : 2024-05-05 DOI: 10.1186/s41479-024-00130-2
Alexander J Adamson, Constantinos Kallis, Ian Douglas, Jennifer K Quint

Background: In primary care, identifying pneumonia events in people with chronic obstructive pulmonary disease (COPD) may be challenging due to similarities in symptoms with COPD exacerbations and lack of diagnostic testing. This study explored the accuracy of pneumonia diagnosis coded in primary care by comparing diagnosis in primary care with diagnosis in hospital.

Methods: A study population of people with COPD in England was created using the Clinical Practice Research Datalink Aurum database linked with Hospital Episode Statistics inpatient data. Pneumonia codes only, and pneumonia code with associated clinical and/or treatment codes (chest x-ray, symptoms, antibiotics, sputum and blood culture) were used to determine pneumonia events in primary care. Events that were followed by hospitalisation within 7 days were used to estimate the positive predictive value (PPV) of pneumonia coding in primary care, using primary diagnosis of pneumonia in secondary care as the gold standard. The PPV of primary care recording of hospitalised pneumonia was also calculated.

Results: Two hundred seventy-four thousand one hundred fifty-six COPD patients were eligible for inclusion, of whom 7,560 had an eligible pneumonia event in primary care diagnosed between 2015-2019 which was not 'hospital-acquired' and was diagnosed and entered on the same day. Of the 2,094 events which were followed by hospitalisation within 7 days, 1,208 had a primary diagnosis of pneumonia in hospital, representing a PPV of pneumonia coding in primary care of 57.7% (95% CI 55.6%-59.8%). Another 284 (13.6%) were diagnosed as a COPD exacerbation and 114 (5.4%) were diagnosed as another respiratory disease. Use of additional pneumonia clinical and treatment codes had a modest effect on the PPV but substantially lowered the number of events. Of the 33,603 eligible pneumonia events identified in secondary care, only 11,445 were recorded in primary care within 42 days, representing a sensitivity of 34.1% (95% CI 33.6%-34.6%).

Conclusions: Use of primary care pneumonia codes and associated clinical and treatment codes to determine pneumonia is not recommended due to significant levels of misdiagnosis and many hospitalised events failing to be recorded in primary care.

背景:在初级医疗中,由于慢性阻塞性肺病(COPD)患者的症状与慢性阻塞性肺病(COPD)加重的症状相似,且缺乏诊断测试,因此识别慢性阻塞性肺病(COPD)患者的肺炎事件可能具有挑战性。本研究通过比较基层医疗机构的诊断与医院的诊断,探讨了基层医疗机构对肺炎诊断编码的准确性:方法:利用临床实践研究数据链 Aurum 数据库与医院病历统计住院病人数据相连接,建立了英格兰慢性阻塞性肺病患者研究人群。仅使用肺炎代码、肺炎代码及相关临床和/或治疗代码(胸部 X 光检查、症状、抗生素、痰液和血液培养)来确定初级保健中的肺炎事件。以二级医疗机构的肺炎初诊为金标准,使用 7 天内住院的事件来估算基层医疗机构肺炎编码的阳性预测值 (PPV)。同时还计算了基层医疗机构记录住院肺炎的 PPV:有 27.4156 万名慢性阻塞性肺病患者符合纳入条件,其中有 7560 名患者在 2015-2019 年期间在初级医疗机构诊断出符合条件的肺炎事件,该事件并非 "医院获得性 "肺炎,且在同一天诊断和输入。在 2,094 例 7 天内住院的事件中,1,208 例经医院初诊为肺炎,这表明初级医疗肺炎编码的 PPV 为 57.7%(95% CI 55.6%-59.8%)。另有 284 例(13.6%)被诊断为慢性阻塞性肺病加重,114 例(5.4%)被诊断为其他呼吸道疾病。使用额外的肺炎临床和治疗代码对 PPV 的影响不大,但却大大降低了事件的数量。在二级医疗机构发现的 33603 例符合条件的肺炎事件中,只有 11445 例在 42 天内由初级医疗机构进行了记录,灵敏度为 34.1%(95% CI 33.6%-34.6%):结论:不建议使用初级医疗肺炎代码及相关临床和治疗代码来确定肺炎,因为误诊率很高,而且许多住院事件未能在初级医疗中记录下来。
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引用次数: 0
Sex-dependent vulnerability for Wistar rats model following intranasal instillation with Klebsiella pneumoniae ATCC 43816 causing lobar pneumonia. 肺炎克雷伯菌 ATCC 43816 经鼻腔灌入导致大叶性肺炎的 Wistar 大鼠模型的易感性与性别有关。
IF 6.8 Q1 RESPIRATORY SYSTEM Pub Date : 2024-03-25 DOI: 10.1186/s41479-024-00126-y
Patrick Hervé Diboue Betote, Esther Del Florence Ndedi Moni, Sonia Raïssa Gayap Matchuenkam, Sandrine Suzanne Bayengue Beack, Rodrigue Fifen, Raogo Ouedraogo, Gabriel A Agbor, Rasmané Semde, Nga Nnanga, Maximilienne Ascension Nyegue

Background: Klebsiella pneumoniae has become one of the major threats to public health as it causes nosocomial and community-acquired infections like lobar pneumonia. This infection causes acute inflammation in the lung, characterized by the recruitment of polymorphonuclear cells, generating free radicals, and decreasing the endogenous antioxidant balance system. Many experimental studies have focused on the induction, progression and resolution of infection up to its peak, but these documented processes remain highly random and their sex dependence un-elicited. These fluctuations of physiopathological parameters would impact disease progression depending on the animal's model and bacterial strain used. The present study investigated the sex-dependent vulnerability of Wistar rats to K. pneumoniae ATCC 43816 lobar pneumonia induced by the intranasal instillation method.

Methods: Experimental pneumonia was induced by K. pneumoniae ATCC 43816 in male and female Wistar rats following intranasal instillation. The physiopathogenesis of the disease was studied by bacteriological and histopathological exams, histomorphometric analysis of the blood and/or lung tissue, and body weight loss in infected animals. In addition, the overall severity of lesions was determined by the total score obtained by averaging the individual scores from the same group of animals.

Results: The K. pneumoniae ATCC 43816 strain showed inoculation dose-, incubation time of the disease- and sex-dependent- differences in its ability to induce lobar pneumonia. Evaluation of different parameters showed that the disease peaked on day 15 post-inoculation, with more pathogenic effects on female rats. This observed sex-dependence difference in Wistar rats was mainly highlighted by the determined lethal dose 50 (LD50), bacterial load count in whole blood and lung tissues, body weight loss, inflammatory granulomas forming and diffuse alveolar damages. The pathogenicity was confirmed by scoring the severity of pathologic lesions of lung tissues.

Conclusions: The results obtained highlighted the gender-dependency in the physiopathogenesis processes of K. pneumoniae ATCC 43816 induced-lobar pneumonia, in Wistar rats. Female Wistar rats' susceptibility is useful in studying pathology and in preclinical trial investigations of new treatments for infectious pneumonia.

背景:肺炎克雷伯菌已成为公共卫生的主要威胁之一,因为它可引起大叶性肺炎等院内和社区获得性感染。这种感染会导致肺部急性炎症,其特征是多形核细胞的募集、自由基的产生以及内源性抗氧化平衡系统的降低。许多实验研究都关注感染的诱发、发展和消退,直至达到高峰,但这些记录在案的过程仍具有很大的随机性,其性别依赖性也未被激发。这些生理病理参数的波动会影响疾病的进展,这取决于动物模型和所用的细菌菌株。本研究调查了 Wistar 大鼠对通过鼻内灌注法诱导的 K. pneumoniae ATCC 43816 大叶性肺炎的性别依赖性:方法:用 K. pneumoniae ATCC 43816 通过鼻内灌注法诱导雄性和雌性 Wistar 大鼠发生实验性肺炎。通过细菌学和组织病理学检查、血液和/或肺组织的组织形态学分析以及受感染动物的体重减轻来研究该疾病的生理发病机制。此外,病变的总体严重程度由同组动物的单项评分平均值得出的总分决定:结果:肺炎克氏菌 ATCC 43816 株在诱发大叶性肺炎的能力上存在接种剂量、疾病潜伏时间和性别差异。对不同参数的评估表明,疾病在接种后第 15 天达到高峰,对雌性大鼠的致病作用更大。在 Wistar 大鼠身上观察到的这种性别依赖性差异主要体现在确定的致死剂量 50(LD50)、全血和肺组织中的细菌数量、体重减轻、炎性肉芽肿形成和弥漫性肺泡损伤。通过对肺组织病变的严重程度进行评分,确认了致病性:结论:研究结果表明,肺炎克氏菌 ATCC 43816 诱导的 Wistar 大鼠大叶性肺炎的生理发病过程与性别有关。雌性 Wistar 大鼠的易感性有助于病理学研究和传染性肺炎新疗法的临床前试验研究。
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引用次数: 0
Combination of a multiplex pneumonia panel and Gram staining for antimicrobial selection to treat lower respiratory tract infection. 在治疗下呼吸道感染时,结合使用多重肺炎样本和革兰氏染色法选择抗菌药物。
IF 6.8 Q1 RESPIRATORY SYSTEM Pub Date : 2024-03-05 DOI: 10.1186/s41479-024-00125-z
Hiroshi Matsuura, Koudai Arimoto, Yoshihito Takahashi, Masafumi Kishimoto

Aim: This study aimed to examine the utility of simultaneously performed the Film Array pneumonia panels (pneumonia panels) and Gram staining with the same specimens and evaluate their effect on antimicrobial selection.

Methods: This prospective study, conducted from April 2022 to January 2023, enrolled adult patients with pneumonia, including those with ventilator-associated pneumonia (VAP). Specimens obtained at the time of sputum culture were tested using Gram staining and the pneumonia panel. The patients' characteristics and pneumonia panel results were assessed. We also evaluated the selection of antimicrobial agents for drug-resistant bacteria detected by the pneumonia panel.

Results: This study comprised 39 patients: 25 patients (64.1%) underwent intubation, including 7 (17.9%) patients with VAP. Most tests were performed at the time of admission, while some were performed during hospitalization. Good quality sputum was obtained from intubated patients. The pneumonia panel detected drug-resistant bacteria in 12 cases. Six patients required antimicrobial escalation, while the antimicrobial regimen remained unchanged for 2 patients in whom Pseudomonas aeruginosa was detected and had already received meropenem. The attending physician did not change the antimicrobials, considering the results of Gram staining and the patient's general condition in 4 patients.

Conclusions: The pneumonia panel might be useful for detecting drug-resistant organisms at an early stage. It may be important to take the Gram staining results and the patient's condition into account with pneumonia panel for appropriate antibiotic prescription.

目的:本研究旨在探讨对同一标本同时进行Film Array肺炎检测(肺炎检测)和革兰氏染色的实用性,并评估它们对抗菌药物选择的影响:这项前瞻性研究于 2022 年 4 月至 2023 年 1 月进行,研究对象为成年肺炎患者,包括呼吸机相关肺炎(VAP)患者。对痰培养时获得的标本使用革兰氏染色法和肺炎检测试剂盒进行检测。我们对患者的特征和肺炎检测结果进行了评估。我们还评估了针对肺炎平板检测出的耐药菌选择抗菌药物的情况:本研究包括 39 名患者:25名患者(64.1%)接受了插管治疗,其中包括7名(17.9%)VAP患者。大多数检测是在入院时进行的,也有一些是在住院期间进行的。插管患者的痰液质量良好。在 12 例肺炎患者中,肺炎检测小组检测出了耐药细菌。其中 6 例患者需要升级抗菌药物,而 2 例患者的抗菌药物方案保持不变,这 2 例患者检测出铜绿假单胞菌,并已接受美罗培南治疗。主治医生考虑到革兰氏染色结果和 4 名患者的一般情况,没有更换抗菌药物:结论:肺炎样本可用于早期检测耐药菌。结论:肺炎平板可用于早期发现耐药菌,在使用肺炎平板时考虑革兰氏染色结果和患者的病情,以开具适当的抗生素处方可能很重要。
{"title":"Combination of a multiplex pneumonia panel and Gram staining for antimicrobial selection to treat lower respiratory tract infection.","authors":"Hiroshi Matsuura, Koudai Arimoto, Yoshihito Takahashi, Masafumi Kishimoto","doi":"10.1186/s41479-024-00125-z","DOIUrl":"10.1186/s41479-024-00125-z","url":null,"abstract":"<p><strong>Aim: </strong>This study aimed to examine the utility of simultaneously performed the Film Array pneumonia panels (pneumonia panels) and Gram staining with the same specimens and evaluate their effect on antimicrobial selection.</p><p><strong>Methods: </strong>This prospective study, conducted from April 2022 to January 2023, enrolled adult patients with pneumonia, including those with ventilator-associated pneumonia (VAP). Specimens obtained at the time of sputum culture were tested using Gram staining and the pneumonia panel. The patients' characteristics and pneumonia panel results were assessed. We also evaluated the selection of antimicrobial agents for drug-resistant bacteria detected by the pneumonia panel.</p><p><strong>Results: </strong>This study comprised 39 patients: 25 patients (64.1%) underwent intubation, including 7 (17.9%) patients with VAP. Most tests were performed at the time of admission, while some were performed during hospitalization. Good quality sputum was obtained from intubated patients. The pneumonia panel detected drug-resistant bacteria in 12 cases. Six patients required antimicrobial escalation, while the antimicrobial regimen remained unchanged for 2 patients in whom Pseudomonas aeruginosa was detected and had already received meropenem. The attending physician did not change the antimicrobials, considering the results of Gram staining and the patient's general condition in 4 patients.</p><p><strong>Conclusions: </strong>The pneumonia panel might be useful for detecting drug-resistant organisms at an early stage. It may be important to take the Gram staining results and the patient's condition into account with pneumonia panel for appropriate antibiotic prescription.</p>","PeriodicalId":45120,"journal":{"name":"Pneumonia","volume":"16 1","pages":"4"},"PeriodicalIF":6.8,"publicationDate":"2024-03-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10913398/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140029143","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Safety and efficacy of favipiravir in COVID-19 patients with pneumonia. A randomized, double-blind, placebo-controlled study (FAVID). 法非拉韦对 COVID-19 肺炎患者的安全性和有效性。一项随机、双盲、安慰剂对照研究(FAVID)。
IF 6.8 Q1 RESPIRATORY SYSTEM Pub Date : 2024-02-25 DOI: 10.1186/s41479-023-00124-6
Juan P Horcajada, Rebeca Aldonza, Mónica Real, Silvia Castañeda-Espinosa, Elena Sendra, Joan Gomez-Junyent, Inmaculada López-Montesinos, Silvia Gómez-Zorrilla, Silvia Briansó, Montserrat Duran-Taberna, Andrés Fernández, Cristina Tarragó, Teresa Auguet-Quintillá

Purpose: To design a randomized clinical trial to assess the efficacy and safety of favipiravir in patients with COVID-19 disease with pneumonia.

Methods: A randomized, double blind, placebo-controlled clinical trial of favipiravir in patients with COVID-19 pneumonia was conducted in three Spanish sites. Randomization 1:1 to favipiravir or placebo (in both groups added to the Standard of Care) was performed to treat the patients with COVID-19 pneumonia. The primary endpoint was "time to clinical improvement," measured as an improvement for ≥ two categories on a 7-point WHO ordinal scale in an up to 28 days' time frame.

Results: Forty-four patients were randomized (23 in the favipiravir group and 21 in the placebo group). The median time to clinical improvement was not different between the favipiravir and the placebo arms (10 days for both groups) and none of the secondary endpoints showed significant differences between arms. The proportion of adverse events (both serious and non-serious) was statistically different between the favipiravir group (68.29%) and the placebo group (31.7%) (p = 0.019), but there was insufficient statistical evidence to correlate the degree of severity of the events with the treatment group.

Conclusions: Favipiravir administered for ten days to patients with COVID-19 and pneumonia did not improve outcomes compared with placebo. Although this is an underpowered negative study, efficacy results align with other randomized trials. However, in the present study, the non-serious adverse events were more frequent in the favipiravir group.

目的:设计一项随机临床试验,评估法非拉韦对 COVID-19 肺炎患者的疗效和安全性:在西班牙的三个地点开展了一项法非拉韦对COVID-19肺炎患者的随机、双盲、安慰剂对照临床试验。在治疗 COVID-19 肺炎患者时,采用 1:1 随机分配法非拉韦或安慰剂(两组均添加到标准护理中)。主要终点是 "临床改善时间",即在最长28天的时间内,在世界卫生组织的7点序数表中改善≥两个类别:44名患者接受了随机治疗(法非拉韦组23人,安慰剂组21人)。法非拉韦组和安慰剂组临床症状改善的中位时间没有差异(两组均为 10 天),且各组的次要终点均无显著差异。法非拉韦组(68.29%)和安慰剂组(31.7%)的不良事件(包括严重和非严重)比例存在统计学差异(p = 0.019),但没有足够的统计学证据将不良事件的严重程度与治疗组相关联:结论:与安慰剂相比,对 COVID-19 和肺炎患者进行为期十天的法维拉韦治疗并不能改善预后。虽然这是一项不足幂次的阴性研究,但疗效结果与其他随机试验一致。然而,在本研究中,非严重不良事件在法匹拉韦组中更为常见。
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引用次数: 0
The effectiveness of glucocorticoid treatment in post-COVID-19 pulmonary involvement. 糖皮质激素治疗 COVID-19 后肺部受累的有效性。
IF 6.8 Q1 RESPIRATORY SYSTEM Pub Date : 2024-02-05 DOI: 10.1186/s41479-023-00123-7
Jan Mizera, Samuel Genzor, Milan Sova, Ladislav Stanke, Radim Burget, Petr Jakubec, Martin Vykopal, Pavol Pobeha, Jana Zapletalová

Rationale: Persistent respiratory symptoms following Coronavirus Disease 2019 (COVID-19) are associated with residual radiological changes in lung parenchyma, with a risk of development into lung fibrosis, and with impaired pulmonary function. Previous studies hinted at the possible efficacy of corticosteroids (CS) in facilitating the resolution of post-COVID residual changes in the lungs, but the available data is limited.

Aim: To evaluate the effects of CS treatment in post-COVID respiratory syndrome patients.

Patients and methods: Post-COVID patients were recruited into a prospective single-center observational study and scheduled for an initial (V1) and follow-up visit (V2) at the Department of Respiratory Medicine and Tuberculosis, University Hospital Olomouc, comprising of pulmonary function testing, chest x-ray, and complex clinical examination. The decision to administer CS or maintain watchful waiting (WW) was in line with Czech national guidelines.

Results: The study involved 2729 COVID-19 survivors (45.7% male; mean age: 54.6). From 2026 patients with complete V1 data, 131 patients were indicated for CS therapy. These patients showed significantly worse radiological and functional impairment at V1. Mean initial dose was 27.6 mg (SD ± 10,64), and the mean duration of CS therapy was 13.3 weeks (SD ± 10,06). Following therapy, significantly better improvement of static lung volumes and transfer factor for carbon monoxide (DLCO), and significantly better rates of good or complete radiological and subjective improvement were observed in the CS group compared to controls with available follow-up data (n = 894).

Conclusion: Better improvement of pulmonary function, radiological findings and subjective symptoms were observed in patients CS compared to watchful waiting. Our findings suggest that glucocorticoid therapy could benefit selected patients with persistent dyspnea, significant radiological changes, and decreased DLCO.

理论依据:2019年冠状病毒病(COVID-19)后出现的持续呼吸道症状与肺实质残留的放射学变化、发展为肺纤维化的风险以及肺功能受损有关。之前的研究暗示皮质类固醇(CS)可能具有促进COVID后肺部残留病变消退的功效,但现有数据有限。目的:评估CS治疗对COVID后呼吸综合征患者的影响:一项前瞻性单中心观察研究招募了 COVID 后患者,并安排他们在奥洛穆茨大学医院呼吸内科和肺结核科进行初诊(V1)和复诊(V2),包括肺功能测试、胸部 X 光检查和复杂的临床检查。根据捷克国家指导方针决定实施 CS 还是继续观察等待 (WW):研究涉及 2729 名 COVID-19 幸存者(45.7% 为男性;平均年龄:54.6 岁)。在2026名拥有完整V1数据的患者中,有131名患者有接受CS治疗的指征。这些患者在 V1 阶段的放射学和功能障碍明显恶化。平均初始剂量为 27.6 毫克(标准差 ± 10.64),CS 治疗的平均持续时间为 13.3 周(标准差 ± 10.06)。治疗后,与有随访数据的对照组(n = 894)相比,CS 组的静态肺容积和一氧化碳转移因子(DLCO)的改善明显更好,放射学和主观改善的良好率或完全改善率也明显更高:结论:与观察等待相比,CS 患者的肺功能、放射学检查结果和主观症状均有更好的改善。我们的研究结果表明,糖皮质激素治疗可使一些有持续性呼吸困难、明显放射学改变和 DLCO 下降的患者受益。
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引用次数: 0
Serum soluble toll-like receptor 4 and risk for clinical severity in COVID-19 patients. 血清可溶性收费样受体 4 与 COVID-19 患者临床严重程度的风险。
IF 6.8 Q1 RESPIRATORY SYSTEM Pub Date : 2024-01-05 DOI: 10.1186/s41479-023-00121-9
Maha E Houssen, Marwa O Elmaria, Dina Badr, Rasha El-Mahdy, Mayada A Ghannam, Shaimaa El-Ashwah, May Denewer, Metwaly Ibrahim Mortada

Toll-like receptor 4 (TLR4) signaling mediates sustained systemic inflammation in(COVID)-19 patients. We aimed to assess the serum levels of sTLR4 and sCD14 as negative regulators of Toll like receptor signaling and their association with laboratory markers and clinical severity in covid 19 patients. Ninety-eight patients with COVID-19 (70 severe and 28 non-severe) were enrolled in the study. Serum sCD14 andsTLR4were determined by ELISA. A significant increase in serum sTLR4 and sCD14 levels was detected in severe compared to non severe COVID19 patients.Receiver operating characteristic curve (ROC) analysis revealed significant diagnostic potential of serum sTLR4 and sCD14 in covid19 patients.We conclude that Serum sTLR4 and sCD14 may be promising clinical severity markers for COVID19 patients.

Toll样受体4(TLR4)信号介导了(COVID)-19患者持续的全身性炎症。我们的目的是评估作为Toll样受体信号转导负调控因子的sTLR4和sCD14的血清水平及其与COVID-19患者的实验室指标和临床严重程度的关系。研究共纳入了 98 名 COVID-19 患者(70 名重度患者和 28 名非重度患者)。通过酶联免疫吸附法测定了血清 sCD14 和 sTLR4。与非重度 COVID19 患者相比,重度患者血清中 sTLR4 和 sCD14 的水平明显升高。接收者操作特征曲线(ROC)分析显示,血清中 sTLR4 和 sCD14 对 COVID19 患者具有明显的诊断潜力。
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引用次数: 0
期刊
Pneumonia
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