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Organizing pneumonia in hospitalized COVID-19 patients: risk factors and long-term outcomes. COVID-19住院患者组织肺炎:危险因素和长期结局
IF 8.5 Q1 RESPIRATORY SYSTEM Pub Date : 2025-07-05 DOI: 10.1186/s41479-025-00169-9
Sandra Cuerpo, Fernanda Hernandez-Gonzalez, Mariana Benegas, Nuria Albacar, Alejandra Lopez-Giraldo, Inés Cobo, Samara Suarez, Verónica Torres, Adelaido Salazar, Nestor Soler, María Noboa-Sevilla, Alejandro Frino-García, Nancy Pérez-Rodas, Joel Francesqui, Xavier Alsina-Restoy, Ana María Muñoz Fernández, Nuria Roger, Sergio Prieto, Alexandru Vlagea, Estibaliz Ruiz, Rosa Faner, Joan Albert Barberà, Alex Soriano, Joan Ramon Badia, María Molina-Molina, Oriol Sibila, Marcelo Sánchez, Alvar Agustí, Judith Garcia-Aymerich, Jacobo Sellares
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引用次数: 0
RSV: an overview of infection in adults. 呼吸道合胞病毒:成人感染概况。
IF 8.5 Q1 RESPIRATORY SYSTEM Pub Date : 2025-06-25 DOI: 10.1186/s41479-025-00165-z
Charles Feldman, Ronald Anderson

Background: Respiratory syncytial virus (RSV) infection was originally considered to be simply a disease of childhood. However, it has increasingly been recognized that the virus may also cause infection in adults. Furthermore, great strides have been made in understanding the clinical manifestations, as well as aspects of its management and prevention, requiring the need for greater awareness of the various aspects of this infection in adults.

Main body: There are several potential reasons that RSV may have been overlooked in adults. Firstly, it was due to a lack of knowledge that this infection could occur in this age group. Secondly, there was infrequent testing for RSV infection in adults, both for this reason and because RSV antigen testing in adults is less sensitive than in children. Thirdly, RSV diagnosis, therefore, required the performance of polymerase chain reaction (PCR) testing, which is both expensive and underutilized. Finally, there was also the belief at that time that if the infection was due to RSV, there was little one could do to about it in terms of treatment and/or prevention. More recently, however, enormous advances have been made particularly in the management and prevention of this infection. This manuscript, which is an extensive literature review, describes the modern understanding of the burden of infection, the clinical presentation, risk factors, immunopathogenesis, management, and prevention of RSV infections in adults.

Conclusion: RSV virus is a common cause of respiratory tract infections in adults and advances in recent research have not only enhanced our knowledge of this infection but have led to the development of effective treatment and prevention of the infection.

背景:呼吸道合胞病毒(RSV)感染最初被认为仅仅是一种儿童疾病。然而,人们越来越认识到这种病毒也可能引起成人感染。此外,在了解临床表现及其管理和预防方面已经取得了很大进展,需要提高对成人感染的各个方面的认识。正文:有几个潜在的原因可能被忽视的RSV在成人。首先,由于缺乏这种感染可能发生在这个年龄组的知识。其次,对成人RSV感染的检测很少,这既是因为这个原因,也是因为成人RSV抗原检测的敏感性低于儿童。第三,因此,RSV诊断需要进行聚合酶链反应(PCR)检测,这既昂贵又未得到充分利用。最后,当时还有一种观点认为,如果感染是由呼吸道合胞病毒引起的,那么在治疗和/或预防方面,人们几乎无能为力。然而,最近特别是在管理和预防这种感染方面取得了巨大进展。这篇文章是一篇广泛的文献综述,描述了对成人RSV感染的感染负担、临床表现、危险因素、免疫发病机制、管理和预防的现代理解。结论:RSV病毒是成人呼吸道感染的常见原因,近年来的研究进展不仅提高了我们对这种感染的认识,而且导致了有效治疗和预防感染的发展。
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引用次数: 0
Are presentations of thoracic CT performed on admission to the ICU associated with mortality at day-90 in COVID-19 related ARDS? 入院时进行胸部CT检查与COVID-19相关ARDS第90天的死亡率有关吗?
IF 8.5 Q1 RESPIRATORY SYSTEM Pub Date : 2025-06-05 DOI: 10.1186/s41479-025-00166-y
Alexia Le Corre, Adel Maamar, Mathieu Lederlin, Nicolas Terzi, Jean-Marc Tadié, Arnaud Gacouin

Background: Computed tomography (CT) analysis of lung morphology has significantly advanced our understanding of acute respiratory distress syndrome (ARDS). During the Coronavirus Disease 2019 (COVID-19) pandemic, CT imaging was widely utilized to evaluate lung injury and was suggested as a tool for predicting patient outcomes. However, data specifically focused on patients with ARDS admitted to intensive care units (ICUs) remain limited.

Methods: This retrospective study analyzed patients admitted to ICUs between March 2020 and November 2022 with moderate to severe COVID-19 ARDS. All CT scans performed within 48 h of ICU admission were independently reviewed by three experts. Lung injury severity was quantified using the CT Severity Score (CT-SS; range 0-25). Patients were categorized as having severe disease (CT-SS ≥ 18) or non-severe disease (CT-SS < 18). The primary outcome was all-cause mortality at 90 days. Secondary outcomes included ICU mortality and medical complications during the ICU stay. Additionally, we evaluated a computer-assisted CT-score assessment using artificial intelligence software (CT Pneumonia Analysis®, SIEMENS Healthcare) to explore the feasibility of automated measurement and routine implementation.

Results: A total of 215 patients with moderate to severe COVID-19 ARDS were included. The median CT-SS at admission was 18/25 [interquartile range, 15-21]. Among them, 120 patients (56%) had a severe CT-SS (≥ 18), while 95 patients (44%) had a non-severe CT-SS (< 18). The 90-day mortality rates were 20.8% for the severe group and 15.8% for the non-severe group (p = 0.35). No significant association was observed between CT-SS severity and patient outcomes.

Conclusion: In patients with moderate to severe COVID-19 ARDS, systematic CT assessment of lung parenchymal injury was not a reliable predictor of 90-day mortality or ICU-related complications.

背景:肺形态的计算机断层扫描(CT)分析大大提高了我们对急性呼吸窘迫综合征(ARDS)的认识。在2019冠状病毒病(COVID-19)大流行期间,CT成像被广泛用于评估肺损伤,并被建议作为预测患者预后的工具。然而,专门针对入住重症监护病房(icu)的ARDS患者的数据仍然有限。方法:本回顾性研究分析了2020年3月至2022年11月期间入住icu的中至重度COVID-19 ARDS患者。所有在ICU入院48小时内进行的CT扫描由三位专家独立审查。肺损伤严重程度采用CT严重程度评分(CT- ss;范围0-25)。将患者分为严重疾病(CT-SS≥18)和非严重疾病(CT-SS®,SIEMENS Healthcare),以探讨自动化测量和常规实施的可行性。结果:共纳入215例中~重度COVID-19 ARDS患者。入院时CT-SS中位数为18/25[四分位数间距,15-21]。其中120例(56%)患者有严重CT- ss(≥18),95例(44%)患者有非严重CT- ss(结论:在中重度COVID-19 ARDS患者中,系统的CT评估肺实质损伤并不能可靠地预测90天死亡率或重症监护病房相关并发症。
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引用次数: 0
Clinical effectiveness of oral antiviral treatment for non-hospitalized high-risk patients with COVID-19 during Omicron JN.1 subvariant wave: a US-based propensity-matched cohort study. Omicron JN.1亚变异波期间口服抗病毒治疗非住院高危COVID-19患者的临床疗效:一项美国倾向匹配队列研究
IF 8.5 Q1 RESPIRATORY SYSTEM Pub Date : 2025-05-25 DOI: 10.1186/s41479-025-00168-w
Wan-Hsuan Hsu, Bo-Wen Shiau, Po-Yu Huang, Ya-Wen Tsai, Jheng-Yan Wu, Ting-Hui Liu, Min-Hsiang Chuang, Shu-Farn Tey, Lun-Wu Hung, Chih-Cheng Lai

Background: This real-world study aimed to assess the effectiveness of novel oral antiviral agents in managing COVID-19 among high-risk patients during the Omicron JN.1 subvariant wave.

Methods: Data from the TriNetX US network were analyzed using a multi-institutional propensity score matching (PSM) analysis. High-risk non-hospitalized adults with COVID-19 were included, and patients receiving oral antiviral agents (study group) were compared to those not receiving antiviral agents (control group). Primary outcomes included all-cause emergency department (ED) visits, hospitalizations, or death within 30 days.

Results: Among 67,495 high-risk patients identified, 17,852 received oral antiviral agents (study group) and 49,643 did not (control group). After PSM, two matched cohorts of 17,847 patients each were established. The study group receiving antiviral agents exhibited a significantly lower risk of primary composite outcome during the 30-day follow-up period compared to the control group (HR, 0.77; 95% CI, 0.72-0.84). Regarding the secondary outcomes, the study group consistently exhibited a significantly lower risk of all-cause ED visits (4.2% vs. 5.4%; HR, 0.78; 95% CI, 0.71-0.86), hospitalization (2.8% vs. 3.3%; HR, 0.86; 95% CI, 0.77-0.97), and mortality (0.1% vs. 0.3%; HR, 0.17; 95% CI, 0.08-0.35) than the control group. Subgroup analyses showed consistent benefits across various demographic and clinical characteristics, except in individuals with booster vaccination.

Conclusions: Oral antiviral agents significantly reduced the risk of adverse outcomes among high-risk COVID-19 patients during the Omicron JN.1 subvariant wave. These findings support the potential benefits of oral antiviral therapy in treating COVID-19, particularly in high-risk populations.

背景:这项现实世界的研究旨在评估新型口服抗病毒药物在Omicron JN.1亚变异波期间对高危患者治疗COVID-19的有效性。方法:使用多机构倾向评分匹配(PSM)分析来自TriNetX US网络的数据。纳入高危非住院成人COVID-19,并将接受口服抗病毒药物治疗的患者(研究组)与未接受抗病毒药物治疗的患者(对照组)进行比较。主要结局包括全因急诊就诊、住院或30天内死亡。结果:67,495例高危患者中,17,852例接受了口服抗病毒药物治疗(研究组),49,643例未接受口服抗病毒药物治疗(对照组)。PSM后,建立了两个匹配的队列,每个队列有17,847名患者。与对照组相比,接受抗病毒药物治疗的研究组在30天随访期间出现主要综合结局的风险显著降低(HR, 0.77;95% ci, 0.72-0.84)。关于次要结果,研究组始终表现出明显较低的全因ED就诊风险(4.2% vs. 5.4%;人力资源,0.78;95% CI, 0.71-0.86),住院(2.8% vs. 3.3%;人力资源,0.86;95% CI, 0.77-0.97)和死亡率(0.1% vs. 0.3%;人力资源,0.17;95% CI, 0.08-0.35)高于对照组。亚组分析显示,除接种强化疫苗的个体外,在各种人口统计学和临床特征中均有一致的益处。结论:口服抗病毒药物可显著降低高危COVID-19患者在Omicron JN.1亚变异波期间不良结局的风险。这些发现支持口服抗病毒药物治疗COVID-19的潜在益处,特别是在高危人群中。
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引用次数: 0
Chest tube drainage versus repeated therapeutic thoracentesis for the management of pleural infections: a retrospective multicentre propensity-matched study. 胸管引流与反复胸腔穿刺治疗胸膜感染:一项多中心倾向匹配的回顾性研究。
IF 8.5 Q1 RESPIRATORY SYSTEM Pub Date : 2025-05-25 DOI: 10.1186/s41479-025-00167-x
Marion Charron, Victor Roy, Christophe Gut-Gobert, Etienne-Marie Jutant, Louis Leclere, Baptiste Hourmant, Jean-Claude Meurice, Stéphane Jouneau, David Luque Paz

Background: Drainage of infected pleural fluid is pivotal in the management of pleural infections, either by chest tube drainage (CTD) or repeated therapeutic thoracocentesis (RTT), in association with the use of intrapleural fibrinolytic therapy (IPFT) and DNase.

Methods: The aim of this study was to compare the efficacy and the safety of these two methods of pleural drainage. We conducted a multicenter retrospective study, which included all the patients who was hospitalized for suspected pleural infection in three university hospitals between 2012 and 2021 drained by CTD or RTT. A propensity-score matching was performed to compare patients drained by RTT (RTT group) and by chest tube (CTD group) with adjunctive IPFT and DNase.

Results: Two hundred and twenty-nine patients with suspected pleural infection were included. After a propensity-score matching, 78 patients were included in the final analysis, divided in two groups of 39 patients each. Patients in RTT group had a reduced length of drainage (6 days [4.3-8] vs 9 [6.5-13], OR = 1.41, 95%CI [1.05-1.89]) and a reduced length of hospital stay (15 days [11.5-21.5] vs 21 [14-30.5], OR = 1.28, 95%CI [1.01-1.61]). There was no significant difference in mortality rates, surgical referral, relapse, and drainage-related complications between the two groups.

Conclusions: The management of pleural infections through RTT with IPFT and DNase appears to be as effective and as safe as CTD. Randomized controlled trials comparing RTT and CTD would be required to confirm these results.

背景:胸腔管引流(CTD)或反复治疗性胸腔穿刺术(RTT),以及胸膜内纤溶治疗(IPFT)和DNase的使用,对感染的胸腔液进行引流是胸膜感染治疗的关键。方法:比较两种胸腔引流方法的疗效和安全性。我们进行了一项多中心回顾性研究,纳入了2012年至2021年间在三所大学医院因疑似胸膜感染住院的所有患者,这些患者均采用CTD或RTT引流。采用倾向评分匹配法比较RTT组(RTT组)和胸管引流组(CTD组)患者辅助IPFT和DNase。结果:共纳入疑似胸膜感染患者229例。经过倾向评分匹配后,78名患者被纳入最终分析,分为两组,每组39名患者。RTT组患者引流时间缩短(6天[4.3-8]vs 9天[6.5-13],OR = 1.41, 95%CI[1.05-1.89]),住院时间缩短(15天[11.5-21.5]vs 21天[14-30.5],OR = 1.28, 95%CI[1.01-1.61])。两组在死亡率、手术转诊、复发率和引流相关并发症方面无显著差异。结论:IPFT和DNase联合RTT治疗胸膜感染与CTD治疗同样有效和安全。需要随机对照试验比较RTT和CTD来证实这些结果。
{"title":"Chest tube drainage versus repeated therapeutic thoracentesis for the management of pleural infections: a retrospective multicentre propensity-matched study.","authors":"Marion Charron, Victor Roy, Christophe Gut-Gobert, Etienne-Marie Jutant, Louis Leclere, Baptiste Hourmant, Jean-Claude Meurice, Stéphane Jouneau, David Luque Paz","doi":"10.1186/s41479-025-00167-x","DOIUrl":"10.1186/s41479-025-00167-x","url":null,"abstract":"<p><strong>Background: </strong>Drainage of infected pleural fluid is pivotal in the management of pleural infections, either by chest tube drainage (CTD) or repeated therapeutic thoracocentesis (RTT), in association with the use of intrapleural fibrinolytic therapy (IPFT) and DNase.</p><p><strong>Methods: </strong>The aim of this study was to compare the efficacy and the safety of these two methods of pleural drainage. We conducted a multicenter retrospective study, which included all the patients who was hospitalized for suspected pleural infection in three university hospitals between 2012 and 2021 drained by CTD or RTT. A propensity-score matching was performed to compare patients drained by RTT (RTT group) and by chest tube (CTD group) with adjunctive IPFT and DNase.</p><p><strong>Results: </strong>Two hundred and twenty-nine patients with suspected pleural infection were included. After a propensity-score matching, 78 patients were included in the final analysis, divided in two groups of 39 patients each. Patients in RTT group had a reduced length of drainage (6 days [4.3-8] vs 9 [6.5-13], OR = 1.41, 95%CI [1.05-1.89]) and a reduced length of hospital stay (15 days [11.5-21.5] vs 21 [14-30.5], OR = 1.28, 95%CI [1.01-1.61]). There was no significant difference in mortality rates, surgical referral, relapse, and drainage-related complications between the two groups.</p><p><strong>Conclusions: </strong>The management of pleural infections through RTT with IPFT and DNase appears to be as effective and as safe as CTD. Randomized controlled trials comparing RTT and CTD would be required to confirm these results.</p>","PeriodicalId":45120,"journal":{"name":"Pneumonia","volume":"17 1","pages":"13"},"PeriodicalIF":8.5,"publicationDate":"2025-05-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12103787/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144143894","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Chest drainage or repeated thoracentesis for pleural infections: a clinical dilemma. 胸腔引流或反复胸腔穿刺治疗胸膜感染:一个临床难题。
IF 8.5 Q1 RESPIRATORY SYSTEM Pub Date : 2025-05-22 DOI: 10.1186/s41479-025-00170-2
Carmine Salerni, Michele Mondoni, Giovanni Sotgiu

Pleural infection is a key clinical challenge, especially in immunocompromised patients and in those with pulmonary comorbidities. Its incidence has increased owing to antibiotic resistance and aging of the population. While international guidelines recommend chest tube (CTD) placement for complicated parapneumonic effusions (CPPE), the optimal strategy for fluid drainage is debated. Repeated therapeutic thoracentesis (RTT) could be an alternative to help patient mobility and reduce infectious risk. Studies on RTT demonstrated efficacy similar to that of CTD, mainly when combined with intrapleural fibrinolytic therapy and DNase, whereas others showed higher treatment escalation rates. In the issue of the Journal, Charron et al. show that RTT, combined with IPFT and DNase, decreases both pleural drainage duration and hospital stay when compared with chest drainage, without increasing mortality, surgical referral, or complication rates. However, methodological concerns, including variability in pleural infection definition, retrospective design, and centre-dependent treatment strategies, might limit the generalizability. Large-scale randomized controlled trials are needed to definitively establish its role.

胸膜感染是一个关键的临床挑战,特别是在免疫功能低下的患者和有肺部合并症的患者中。由于抗生素耐药性和人口老龄化,其发病率有所增加。虽然国际指南建议在复杂的肺旁积液(CPPE)中放置胸管(CTD),但液体引流的最佳策略仍存在争议。反复治疗性胸腔穿刺(RTT)可能是帮助患者活动和降低感染风险的另一种选择。研究显示RTT的疗效与CTD相似,主要是在联合胸膜内纤溶治疗和DNase时,而其他研究显示更高的治疗升级率。Charron等人在杂志上发表的研究表明,与胸腔引流相比,RTT联合IPFT和DNase可减少胸腔引流持续时间和住院时间,而不会增加死亡率、外科转诊或并发症发生率。然而,方法学方面的考虑,包括胸膜感染定义的可变性、回顾性设计和中心依赖性治疗策略,可能会限制该研究的普遍性。需要大规模的随机对照试验来确定其作用。
{"title":"Chest drainage or repeated thoracentesis for pleural infections: a clinical dilemma.","authors":"Carmine Salerni, Michele Mondoni, Giovanni Sotgiu","doi":"10.1186/s41479-025-00170-2","DOIUrl":"10.1186/s41479-025-00170-2","url":null,"abstract":"<p><p>Pleural infection is a key clinical challenge, especially in immunocompromised patients and in those with pulmonary comorbidities. Its incidence has increased owing to antibiotic resistance and aging of the population. While international guidelines recommend chest tube (CTD) placement for complicated parapneumonic effusions (CPPE), the optimal strategy for fluid drainage is debated. Repeated therapeutic thoracentesis (RTT) could be an alternative to help patient mobility and reduce infectious risk. Studies on RTT demonstrated efficacy similar to that of CTD, mainly when combined with intrapleural fibrinolytic therapy and DNase, whereas others showed higher treatment escalation rates. In the issue of the Journal, Charron et al. show that RTT, combined with IPFT and DNase, decreases both pleural drainage duration and hospital stay when compared with chest drainage, without increasing mortality, surgical referral, or complication rates. However, methodological concerns, including variability in pleural infection definition, retrospective design, and centre-dependent treatment strategies, might limit the generalizability. Large-scale randomized controlled trials are needed to definitively establish its role.</p>","PeriodicalId":45120,"journal":{"name":"Pneumonia","volume":"17 1","pages":"16"},"PeriodicalIF":8.5,"publicationDate":"2025-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12100824/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144129246","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Respiratory dysbiosis as prognostic biomarker of disease severity for adults with community-acquired pneumonia requiring mechanical ventilation. 呼吸失调作为需要机械通气的社区获得性肺炎成人疾病严重程度的预后生物标志物
IF 8.5 Q1 RESPIRATORY SYSTEM Pub Date : 2025-05-05 DOI: 10.1186/s41479-025-00163-1
Loreto Vidaur, Amalur Guridi, Oihana Leizaola, Jokin Marin, Jordi Rello, Cristina Sarasqueta, Ane Sorarrain, Jose María Marimón

Objetives: To ascertain the role of the lung microbiome in the development of severe pneumonia and its potential as a biomarker for disease progression.

Methods: BAL samples from 34 adults with severe community-acquired pneumonia (CAP) (17 viral, 8 viral coinfected with bacteria and 9 bacterial) admitted to the ICU for acute respiratory failure between 2019 and 2021 were collected within the first 48 h of admission to the ICU. The microbiome was characterized via the Ion 16S Metagenomics Kit and the Ion Torrent sequencing platform. Clinical factors, including survival, mechanical ventilation duration, blood biomarkers and organ failure in terms of acute respiratory distress syndrome (ARDS), shock or acute renal failure, were correlated with microbiome characteristics.

Results: The microbiome diversity in patients with viral pneumonia was significantly greater than that in patients with bacterial or coinfected pneumonia: the Shannon diversity index was 3.75 (Q1-Q3: 2.5-4.1) versus 0.4 (Q1-Q3: 0.2-1.3) and 0.48 (Q1-Q3: 0.3-1.1), respectively (p < 0.05). The microbiome diversity index was associated with severity-of-illness (APACHE II), independent of the etiology of pneumonia (B coefficient -1.845; p < 0.01). Patients with severe viral CAP who developed ARDS had a lower presence of Proteobacteria, and those who were complicated with ventilator-associated pneumonia had a higher prevalence of Acinetobacter at admission. The mortality of patients with bacterial or coinfected pneumonia was 35%. In coinfected patients, the diversity index was associated with the development of shock.

Conclusion: Patients with severe CAP have low respiratory microbiome diversity, indicating that respiratory microbiome diversity is a potential biomarker of disease severity.

目的:确定肺部微生物组在重症肺炎发展中的作用及其作为疾病进展生物标志物的潜力。方法:收集2019 - 2021年因急性呼吸衰竭入住ICU的34例成人重症社区获得性肺炎(CAP)患者(病毒性17例,病毒性合并细菌8例,细菌性9例)在入院后48 h内的BAL样本。微生物组通过Ion 16S宏基因组试剂盒和Ion Torrent测序平台进行表征。临床因素,包括生存、机械通气时间、血液生物标志物和急性呼吸窘迫综合征(ARDS)器官衰竭、休克或急性肾功能衰竭,与微生物组特征相关。结果:病毒性肺炎患者的微生物组多样性明显大于细菌性或共感染肺炎患者:Shannon多样性指数分别为3.75 (Q1-Q3: 2.5-4.1)和0.4 (Q1-Q3: 0.2-1.3)和0.48 (Q1-Q3: 0.3-1.1) (p)结论:重症CAP患者呼吸微生物组多样性较低,呼吸道微生物组多样性是疾病严重程度的潜在生物标志物。
{"title":"Respiratory dysbiosis as prognostic biomarker of disease severity for adults with community-acquired pneumonia requiring mechanical ventilation.","authors":"Loreto Vidaur, Amalur Guridi, Oihana Leizaola, Jokin Marin, Jordi Rello, Cristina Sarasqueta, Ane Sorarrain, Jose María Marimón","doi":"10.1186/s41479-025-00163-1","DOIUrl":"https://doi.org/10.1186/s41479-025-00163-1","url":null,"abstract":"<p><strong>Objetives: </strong>To ascertain the role of the lung microbiome in the development of severe pneumonia and its potential as a biomarker for disease progression.</p><p><strong>Methods: </strong>BAL samples from 34 adults with severe community-acquired pneumonia (CAP) (17 viral, 8 viral coinfected with bacteria and 9 bacterial) admitted to the ICU for acute respiratory failure between 2019 and 2021 were collected within the first 48 h of admission to the ICU. The microbiome was characterized via the Ion 16S Metagenomics Kit and the Ion Torrent sequencing platform. Clinical factors, including survival, mechanical ventilation duration, blood biomarkers and organ failure in terms of acute respiratory distress syndrome (ARDS), shock or acute renal failure, were correlated with microbiome characteristics.</p><p><strong>Results: </strong>The microbiome diversity in patients with viral pneumonia was significantly greater than that in patients with bacterial or coinfected pneumonia: the Shannon diversity index was 3.75 (Q1-Q3: 2.5-4.1) versus 0.4 (Q1-Q3: 0.2-1.3) and 0.48 (Q1-Q3: 0.3-1.1), respectively (p < 0.05). The microbiome diversity index was associated with severity-of-illness (APACHE II), independent of the etiology of pneumonia (B coefficient -1.845; p < 0.01). Patients with severe viral CAP who developed ARDS had a lower presence of Proteobacteria, and those who were complicated with ventilator-associated pneumonia had a higher prevalence of Acinetobacter at admission. The mortality of patients with bacterial or coinfected pneumonia was 35%. In coinfected patients, the diversity index was associated with the development of shock.</p><p><strong>Conclusion: </strong>Patients with severe CAP have low respiratory microbiome diversity, indicating that respiratory microbiome diversity is a potential biomarker of disease severity.</p>","PeriodicalId":45120,"journal":{"name":"Pneumonia","volume":"17 1","pages":"10"},"PeriodicalIF":8.5,"publicationDate":"2025-05-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12051328/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144040806","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Changes in the incidence, viral coinfection pattern and outcomes of pneumococcal hospitalizations during and after the COVID-19 pandemic. COVID-19大流行期间和之后肺炎球菌住院的发病率、病毒合并感染模式和结果的变化
IF 8.5 Q1 RESPIRATORY SYSTEM Pub Date : 2025-04-25 DOI: 10.1186/s41479-025-00164-0
King-Pui Florence Chan, Ting-Fung Ma, Hanshu Fang, Wai-Kai Tsui, James Chung-Man Ho, Mary Sau-Man Ip, Pak-Leung Ho

Background: The incidence of pneumococcal pneumonia in the context of the Coronavirus Disease 2019 (COVID-19) pandemic, along with the real-world data on the ratio of non-invasive to invasive pneumococcal pneumonia, is an area that has not been thoroughly studied. The outcomes associated with coinfection of influenza and COVID-19 remain unknown. This study examined the incidence, demographics, coinfection with influenza and/or COVID-19, and clinical outcomes of pneumococcal hospitalizations in Hong Kong during the baseline, pandemic, and post-pandemic periods.

Methods: Hospitalization records of individuals aged 18 years and above with pneumococcal disease from January 2015 to August 2024 were extracted from the territory-wide electronic medical record database. Pneumococcal disease was categorized into invasive pneumococcal pneumonia (IPP), invasive pneumococcal disease without pneumonia (IPDWP), and non-invasive pneumococcal pneumonia (NIPP), followed by univariate and multivariate analyses. Effects of coinfection with influenza and COVID-19 were analyzed.

Results: The incidence of pneumococcal disease decreased during the COVID-19 pandemic but rebounded in the post-pandemic period. There were no significant changes in the distribution of pneumococcal serotypes across the three periods. The study revealed a strong positive correlation between monthly pneumococcal hospitalizations and the indicator of influenza activity, while the correlation with the COVID-19 indicator was weak. Additionally, strong positive correlations were observed between the indicator of influenza activity and influenza coinfections, as well as between the indicator of COVID-19 activity and COVID-19 coinfections. Multivariate analyses identified male gender, a higher comorbidity index, older age, invasive pneumococcal disease (IPP and IPDWP), coinfection with influenza and COVID-19, and hospitalization during the pandemic period as factors associated with adverse outcomes.

Conclusions: The study showcases changes in the epidemiology of pneumococcal disease during and after the COVID-19 pandemic. It highlights the adverse effects of influenza and COVID-19 coinfections on the outcomes of patients with pneumococcal disease and emphasizes the need to vaccinate vulnerable populations against these infections.

背景:2019冠状病毒病(COVID-19)大流行背景下肺炎球菌性肺炎的发病率,以及非侵入性与侵入性肺炎球菌性肺炎的比例数据,是一个尚未深入研究的领域。流感和COVID-19合并感染的相关结果尚不清楚。本研究调查了香港在基线、大流行和大流行后期间肺炎球菌住院的发病率、人口统计学、流感和/或COVID-19合并感染以及临床结果。方法:从全区电子病案数据库中提取2015年1月至2024年8月18岁及以上肺炎球菌病患者的住院记录。将肺炎球菌疾病分为侵袭性肺炎球菌肺炎(IPP)、侵袭性肺炎球菌无肺炎(IPDWP)和非侵袭性肺炎球菌肺炎(NIPP),并进行单因素和多因素分析。分析流感和COVID-19合并感染的影响。结果:肺炎球菌病的发病率在COVID-19大流行期间下降,但在大流行后出现反弹。在三个时期,肺炎球菌血清型的分布没有显著变化。该研究显示,肺炎球菌月住院率与流感活动性指标呈正相关,而与COVID-19指标的相关性较弱。此外,流感活动性指标与流感合并感染之间以及COVID-19活动性指标与COVID-19合并感染之间存在强正相关。多因素分析发现,男性、较高的合并症指数、年龄较大、侵袭性肺炎球菌疾病(IPP和IPDWP)、流感和COVID-19合并感染以及大流行期间住院是与不良结局相关的因素。结论:本研究揭示了COVID-19大流行期间和之后肺炎球菌病流行病学的变化。它强调流感和COVID-19合并感染对肺炎球菌病患者预后的不利影响,并强调需要为脆弱人群接种预防这些感染的疫苗。
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引用次数: 0
Prevention of respiratory syncytial virus disease across the lifespan in Italy. 意大利人一生中呼吸道合胞病毒疾病的预防。
IF 8.5 Q1 RESPIRATORY SYSTEM Pub Date : 2025-04-05 DOI: 10.1186/s41479-025-00160-4
Paolo Manzoni, Eugenio Baraldi, Irene Cetin, Stefania Maggi, Matteo Riccò, Roberta Siliquini, Giovanni Sotgiu, Elsa Viora

Respiratory syncytial virus (RSV) causes substantial morbidity and mortality across the lifespan, with the highest burden seen in infants and older adults. Recently approved immunizing agents, including long-acting neutralizing monoclonal antibodies and a maternal vaccine for passive immunization of newborns, and three vaccines for adults aged 60 years and older who are vulnerable to RSV disease, have the potential to prevent severe RSV-associated disease if implemented successfully. The use of these agents will be implemented in some Italian regions over the next few months, although no consistent timelines or decisions for adoption at the national level are expected. A multidisciplinary group of experts in neonatology, obstetrics and gynecology, respiratory medicine, geriatric medicine, hygiene, and public health reviewed the evidence on RSV prevention and present here their considerations on implementing an RSV prevention strategy in Italy. Given the associated disease burden, it is essential to move quickly to deploy these agents in vulnerable populations, enhance surveillance to accurately detect/predict seasonal trends in RSV activity and measure the impact of prevention strategies. Continuing research combined with widespread use of more sensitive testing is needed to identify vulnerable populations and risk factors. Policies are needed to support these preventive measures in the Italian healthcare system, and access must be accompanied by educational initiatives and advocacy to promote acceptance by HCPs and the target population.

呼吸道合胞病毒(RSV)会导致整个生命周期的大量发病和死亡,其中婴儿和老年人的发病率最高。最近批准的免疫制剂,包括长效中和单克隆抗体和用于新生儿被动免疫的母体疫苗,以及针对易感染 RSV 的 60 岁及以上成年人的三种疫苗,如果成功实施,有可能预防严重的 RSV 相关疾病。未来几个月内,意大利一些地区将开始使用这些制剂,但预计不会有统一的时间表或决定在全国范围内采用。一个由新生儿科、妇产科、呼吸内科、老年医学、卫生和公共卫生等多学科专家组成的小组对 RSV 预防证据进行了审查,并在此提出了他们对在意大利实施 RSV 预防策略的看法。鉴于相关的疾病负担,必须尽快在易感人群中使用这些制剂,加强监测以准确检测/预测 RSV 活动的季节性趋势,并衡量预防策略的影响。需要继续开展研究并广泛使用更灵敏的检测方法,以确定易感人群和风险因素。意大利的医疗保健系统需要制定政策来支持这些预防措施,同时还必须开展教育活动和宣传,以促进保健医生和目标人群的接受。
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引用次数: 0
Streptococcus pneumoniae serotype 33H: a novel serotype with frameshift mutations in the acetyltransferase gene wciG. 肺炎链球菌血清型 33H:乙酰转移酶基因 wciG 发生框架移位突变的新型血清型。
IF 8.5 Q1 RESPIRATORY SYSTEM Pub Date : 2025-03-25 DOI: 10.1186/s41479-025-00162-2
Sam Manna, Belinda D Ortika, Joel P Werren, Casey L Pell, Ilche Gjuroski, Stephanie W Lo, Jason Hinds, Odgerel Tundev, Eileen M Dunne, Bradford D Gessner, Fiona M Russell, E Kim Mulholland, Tuya Mungun, Claire von Mollendorf, Stephen D Bentley, Markus Hilty, Neil Ravenscroft, Catherine Satzke

Background: Streptococcus pneumoniae (the pneumococcus) is a leading cause of community-acquired pneumonia. Pneumococci are categorised into serotypes, based on the type of capsular polysaccharide produced, which has important implications for virulence, vaccine impact and global surveillance. Recently, we identified a novel serotype, which we named 33G, that is comprised of an O-acetylated hexasaccharide repeat unit. In this study, we report and describe variants of 33G, designated 33G-like, which we isolated from the nasopharynx of two adults hospitalised with pneumonia in Mongolia.

Methods: Serological comparison of 33G and 33G-like pneumococci were conducted by Quellung serotyping. Genetic analysis of the capsular polysaccharide loci was performed using whole genome sequencing. Polysaccharide composition was determined using 1H nuclear magnetic resonance.

Results: By Quellung serotyping, 33G pneumococci type as both 10B and 33B whereas 33G-like pneumococci type as both 10B and 33F. Genomic analysis of the capsular polysaccharide locus revealed 33G-like loci are identical to 33G, except for frameshift mutations in the wciG gene which encodes an acetyltransferase responsible for the O-acetylation of beta-galactofuranose (β-Galf) in the capsular polysaccharide repeat unit. We constructed an artificial 33G-like by deleting wciG in a 33G strain and confirmed this gene was responsible for the serological differences between 33G and 33G-like pneumococci. Lastly, 1H nuclear magnetic resonance confirmed the O-acetylation present in the 33G polysaccharide is absent in the 33G-like polysaccharide.

Conclusions: Here, we have provided serological, genetic and biochemical evidence that the 33G-like capsule differs to 33G and all other pneumococcal serotypes, meeting the requirements to be designated as a new serotype, which we have named 33H.

背景:肺炎链球菌(肺炎球菌)是社区获得性肺炎的主要病因。肺炎球菌根据其产生的荚膜多糖类型分为不同的血清型,这对毒性、疫苗影响和全球监测都有重要影响。最近,我们发现了一种由 O-乙酰化六糖重复单元组成的新型血清型,并将其命名为 33G。在本研究中,我们报告并描述了 33G 的变种,并将其命名为 33G-like,这些变种是从蒙古两名肺炎住院成人的鼻咽部分离出来的:方法:通过Quellung血清分型法对33G和33G样肺炎球菌进行血清学比较。采用全基因组测序对囊多糖位点进行了遗传分析。利用 1H 核磁共振测定了多糖成分:通过 Quellung 血清分型,33G 型肺炎球菌既是 10B 型又是 33B 型,而 33G 样肺炎球菌既是 10B 型又是 33F 型。对胶囊多糖基因座的基因组分析表明,33G 样基因座与 33G 完全相同,只是 wciG 基因发生了框架移位突变,该基因编码一种乙酰转移酶,负责将胶囊多糖重复单元中的β-半乳糖呋喃糖(β-Galf)进行 O-乙酰化。我们通过删除 33G 菌株中的 wciG 构建了人工 33G-like,并证实该基因是导致 33G 和 33G-like 肺炎球菌血清学差异的原因。最后,1H 核磁共振证实 33G 多糖中存在的 O-乙酰化在 33G 样多糖中不存在:在此,我们提供了血清学、遗传学和生物化学证据,证明 33G 样胶囊不同于 33G 和所有其他肺炎球菌血清型,符合被指定为新血清型的要求,我们将其命名为 33H。
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引用次数: 0
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Pneumonia
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