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Forecasting epidemic spread of SARS-CoV-2 using ARIMA model (Case study: Iran) 使用ARIMA模型预测严重急性呼吸系统综合征冠状病毒2型的疫情传播(案例研究:伊朗)
IF 3.4 Q1 Social Sciences Pub Date : 2020-08-01 DOI: 10.22034/GJESM.2019.06.SI.01
T. Tran, L. T. Pham, Q. Ngô
Currently, the pandemic caused by a novel coronavirus, namely severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), is one of the most serious issues worldwide. SARS-CoV-2 was first observed in Wuhan, China, on December 31, 2019; this disease has been rapidly spreading worldwide. Iran was the first Middle East country to report a coronavirus death, it has been severely affected. Therefore, it is crucial to forecast the pandemic spread in Iran. This study aims to develop a prediction model for the daily total confirmed cases, total confirmed new cases, total deaths, total new deaths, growth rate in confirmed cases, and growth rate in deaths. The model utilizes SARS-CoV-2 daily data, which are mainly collected from the official website of the European Centre for Disease Prevention and Control from February 20 to May 04, 2020 and other appropriated references. Autoregressive integrated moving average (ARIMA) is employed to forecast the trend of the pandemic spread. The ARIMA model predicts that Iran can easily exhibit an increase in the daily total confirmed cases and the total deaths, while the daily total confirmed new cases, total new deaths, and growth rate in confirmed cases/deaths becomes stable in the near future. This study predicts that Iran can control the SARS-CoV-2 disease in the near future. The ARIMA model can rapidly aid in forecasting patients and rendering a better preparedness plan in Iran.
当前,由新型冠状病毒——严重急性呼吸综合征冠状病毒2型(SARS-CoV-2)引起的大流行是全球最严重的问题之一。2019年12月31日,SARS-CoV-2首次在中国武汉被发现;这种疾病在世界范围内迅速蔓延。伊朗是第一个报告冠状病毒死亡的中东国家,该国受到严重影响。因此,预测大流行在伊朗的传播至关重要。本研究旨在建立每日确诊病例总数、新增确诊病例总数、死亡总人数、新增死亡总人数、确诊病例增长率、死亡人数增长率的预测模型。该模型利用了SARS-CoV-2的日常数据,主要收集自欧洲疾病预防控制中心官方网站,时间为2020年2月20日至5月4日,以及其他适当的参考文献。采用自回归综合移动平均(ARIMA)预测大流行的传播趋势。ARIMA模型预测,伊朗每日确诊病例总数和死亡总数很容易出现增长,而每日确诊新病例总数、新增死亡总数和确诊病例/死亡增长率在不久的将来趋于稳定。这项研究预测,伊朗可以在不久的将来控制SARS-CoV-2疾病。ARIMA模型可以在伊朗迅速帮助预测患者并制定更好的防范计划。
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引用次数: 31
Forecasting of Covid-19 cases based on prediction using artificial neural network curve fitting technique (Special Issue: Covid-19) 基于人工神经网络曲线拟合技术的Covid-19病例预测(特刊:Covid-19)
IF 3.4 Q1 Social Sciences Pub Date : 2020-08-01 DOI: 10.22034/GJESM.2019.06.SI.06
S. Tamang, P. Singh, B. Datta
Artificial neural network is considered one of the most efficient methods in processing huge data sets that can be analyzed computationally to reveal patterns, trends, prediction, forecasting etc. It has a great prospective in engineering as well as in medical applications. The present work employs artificial neural network-based curve fitting techniques in prediction and forecasting of the Covid-19 number of rising cases and death cases in India, USA, France, and UK, considering the progressive trends of China and South Korea. In this paper, three cases are considered to analyze the outbreak of Covid-19 pandemic viz., (i) forecasting as per the present trend of rising cases of different countries (ii) forecasting of one week following up with the improvement trends as per China and South Korea, and (iii) forecasting if followed up the progressive trends as per China and South Korea before a week. The results have shown that ANN can efficiently forecast the future cases of COVID 19 outbreak of any country. The study shows that the confirmed cases of India, USA, France and UK could be about 50,000 to 1,60,000, 12,00,000 to 17,00,000, 1,40,000 to 1,50,000 and 2,40,000 to 2,50,000 respectively and may take about 2 to 10 months based on progressive trends of China and South Korea.  Similarly, the death toll for these countries just before controlling could be about 1600 to 4000 for India, 1,35,000 to 1,00,000 for USA, 40,000 to 55,000 for France, 35,000 to 47,000 for UK during the same period of study.
人工神经网络被认为是处理海量数据集最有效的方法之一,这些数据集可以通过计算分析来揭示模式、趋势、预测、预测等。它在工程和医学上都有很大的应用前景。本文采用基于人工神经网络的曲线拟合技术,结合中国和韩国的发展趋势,对印度、美国、法国和英国的新冠肺炎新增病例数和死亡病例数进行了预测和预测。本文以3个案例分析新冠肺炎大流行疫情,即(i)根据当前各国病例上升趋势进行预测;(ii)根据中国和韩国的改善趋势进行一周预测;(iii)根据中国和韩国一周前的渐进趋势进行预测。结果表明,人工神经网络可以有效预测未来任何国家的新冠肺炎疫情。研究显示,印度、美国、法国和英国的确诊病例分别为5万~ 16万、12万~ 17万、14万~ 15万、24万~ 25万左右,根据中国和韩国的进展趋势,可能需要2 ~ 10个月左右的时间。同样,在同一研究期间,这些国家在控制之前的死亡人数,印度可能在1600到4000人之间,美国在135000到100000人之间,法国在40000到55000人之间,英国在35000到47000人之间。
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引用次数: 11
Outbreak prediction of covid-19 in most susceptible countries covid-19在最易感国家的疫情预测
IF 3.4 Q1 Social Sciences Pub Date : 2020-08-01 DOI: 10.22034/GJESM.2019.06.SI.02
D. Yadav, Himani Maheshwari, U. Chandra
Origin of the coronavirus was the seafood market of Wuhan city, Hubei province in China. The cases of someone suffering from COVID-19 can be traced back to the end of December 2019 in China. This is the most infectious disease and spread worldwide within three months after the first case reported. The World Health Organization renames Coronavirus as COVID-19. COVID-19 is the β-Coronavirus family virus, effect on the lung of human and common symptoms are cough, fever, fatigue, respiratory problem, and cold. The full name of the coronavirus is severe acute respiratory syndrome SARS-CoV. It spread on humans as well as animals and infected more than 183 countries with 2959927 confirm cases and 202733 deaths till 28 April 2020. 84 days data is used to predict confirmed and death cases for the next 10 days by using prophet and daily average based algorithm. Predicted confirmed cases are 2886183 and death cases 190540 till 25 April 2020. This study introduces the spreading pattern of COVID-19 in the top ten infected countries.  After China, European countries are the most infected ones. In this study, data was analyzed on the attributes confirmed, active, recovered and death cases, and next ten days outbreak prediction. Some countries state-wise data confirmed active and death cases also analyzed.
冠状病毒的起源是中国湖北省武汉市的海鲜市场。新冠肺炎患者的病例可以追溯到2019年12月底。这是最具传染性的疾病,在报告首例病例后的三个月内在全球范围内传播。世界卫生组织将冠状病毒更名为新冠肺炎。新冠肺炎是β-冠状病毒家族病毒,对人类肺部有影响,常见症状有咳嗽、发烧、疲劳、呼吸系统问题和感冒。冠状病毒的全名是严重急性呼吸综合征严重急性呼吸系统综合征冠状病毒。它在人类和动物身上传播,感染了183多个国家,截至2020年4月28日,确诊病例为2959927例,死亡病例为202733例。84天的数据用于通过使用先知和基于日均值的算法预测未来10天的确诊和死亡病例。截至2020年4月25日,预计确诊病例为2886183例,死亡病例为190540例。本研究介绍了新冠肺炎在十大感染国的传播模式。在中国之后,欧洲国家是感染人数最多的国家。在这项研究中,对确诊病例、活动病例、康复病例和死亡病例的属性以及未来十天的疫情预测进行了数据分析。一些国家的州数据证实了活跃病例和死亡病例也进行了分析。
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引用次数: 23
Impact of COVID-19 on the qualitative and quantitative aspect of household solid waste 2019冠状病毒病对生活固体废物定性和定量的影响
IF 3.4 Q1 Social Sciences Pub Date : 2020-08-01 DOI: 10.22034/GJESM.2019.06.SI.05
O. Ouhsine, A. Ouigmane, Elhoucein Layati, B. Aba, R. Isaifan, M. Berkani
Houshold waste is the residue generated daily by people as a result of consuming goods and services. The qualitative and quantitative aspects depend on the lifestyle and standard of living of citizens. Hence a change in habits, following an economic or health crisis, can influence the production of waste and its composition. The objective of the present work is to assess the impact of lockdown on the generation of trash and on the habits related to the consumption of goods in two communes in Morocco. More specifically, this study would investigate the behavior of citizens with regard to protective equipment against the coronavirus COVID-19. The results of the survey show that there is an influence of lockdown on the items purchased during this period, with an increase in the purchase of disinfectant products and a decrease in the consumption of meat and canned goods. Thus, the results showed that the quantity of organic fractions had decreased in the domestic waste with the appearance of other fractions such as residues of cleaning products. In addition, the survey conducted showed that 87% of respondents mix coronavirus protective equipment with household waste, which may contribute to the spread of the virus. Concerning the quantitative aspect, the weigh-ups showed that the monthly rate of increase of waste production between the months of February and March 2019 and the corresponding period in 2020 have decreased from +11.41% to +3.8%  in the city of Khenifra (from 2,572 ton in Mars 2019 to  2,456 ton in the correspondent period in 2020) and from +4.73% to -1.23% in the center of Tighassaline (from 136 ton in Mars 2019 to 123 ton in the correspondent period in 2020).
Houshold废物是人们在消费商品和服务时每天产生的残留物。质量和数量方面取决于公民的生活方式和生活水平。因此,在经济或健康危机之后,习惯的改变可能会影响废物的产生及其成分。本工作的目的是评估封锁对摩洛哥两个社区垃圾产生和商品消费习惯的影响。更具体地说,这项研究将调查公民在冠状病毒新冠肺炎防护设备方面的行为。调查结果显示,封锁对这段时间购买的物品产生了影响,消毒产品的购买量增加,肉类和罐头食品的消费量减少。因此,结果表明,随着清洁产品残留物等其他组分的出现,生活垃圾中有机组分的数量有所减少。此外,调查显示,87%的受访者将冠状病毒防护设备与生活垃圾混合在一起,这可能会导致病毒的传播。关于数量方面,称重显示,2019年2月至3月与2020年同期相比,Khenifra市的废物产量月增长率从+11.41%下降到+3.8%(从2019年火星的2572吨下降到2020年同期的2456吨),蒂哈萨林市中心的废物产量从+4.73%下降到-1.23%(从2019年火星的136吨增加到2020年同期的123吨)。
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引用次数: 56
The effect of COVID-19 lockdown on the air environment in India COVID-19封锁对印度空气环境的影响
IF 3.4 Q1 Social Sciences Pub Date : 2020-08-01 DOI: 10.22034/GJESM.2019.06.SI.04
N. Gupta, A. S. Tomar, V. Kumar
COVID-19 is a huge tragedy for the world community. Everything in the world is affected due to this pandemic right from economy to resources where the economy of major countries of the world are facing recession and resources are surplus with no takers at all. The measures to contain COVID-19 pandemic include lockdown, social distancing, isolation, and home quarantine. Lockdown adopted by the different governments which involve non-functioning of all the industry and manufacturing units. However, as a blessing in disguise, these measures have a positive effect on the environment in terms of reduction in toxic gasses like nitrogen dioxide, aerosols, atmosphere ozone, particulate matter, and improvement in air quality. In this paper, the effect on various environmental parameters like aerosol, ozone, particulate matter, nitrogen dioxide, sulfur dioxide, carbon monoxide, and temperature on India by lockdown due to COVID-19 as a preventive measure has been analyzed.  The work involves the refining and preprocessing of raw data of this year and last year of various harmful pollutants present in the environment along with satellite images from National Aeronautics and Space Administration for comparison of different parameters. It has been observed that with the above adopted measures temperature has been reduced to near about 15 degree Celsius, there is also reduction in humidity i.e. it is reduced to 40%,  particulate matter (PM2.5)  reaches near about normal i.e. 40 g/m3 and carbon monoxide levels has also been  reduced to 10 ppm. The main idea is to emphasize the fact that how the environment is self-healing during the lockdown. And this study will be beneficial to environmentalists and industry professionals to make the future strategy for improving the environment.
2019冠状病毒病是国际社会的巨大悲剧。从经济到资源,世界上的一切都受到了影响,世界主要国家的经济面临衰退,资源过剩,无人问津。新冠肺炎疫情防控措施包括封锁、保持社交距离、隔离、居家隔离等。各国政府采取的封锁措施涉及所有工业和制造单位的停止运作。然而,因祸得福,这些措施在减少二氧化氮、气溶胶、大气臭氧、颗粒物等有毒气体和改善空气质量方面对环境产生了积极影响。本文分析了新冠肺炎防控措施对印度的气溶胶、臭氧、颗粒物、二氧化氮、二氧化硫、一氧化碳、温度等各种环境参数的影响。这项工作包括提炼和预处理今年和去年环境中各种有害污染物的原始数据,以及美国国家航空航天局(nasa)的卫星图像,以比较不同参数。经观察,透过上述措施,气温已降至摄氏15度左右,湿度亦降至40%,细颗粒物(PM2.5)亦接近正常水平,即每立方米40克,一氧化碳水平亦降至百万分之10。其主要思想是强调在封锁期间环境如何自我修复的事实。本研究将有助于环保人士和业界人士制定未来改善环境的策略。
{"title":"The effect of COVID-19 lockdown on the air environment in India","authors":"N. Gupta, A. S. Tomar, V. Kumar","doi":"10.22034/GJESM.2019.06.SI.04","DOIUrl":"https://doi.org/10.22034/GJESM.2019.06.SI.04","url":null,"abstract":"COVID-19 is a huge tragedy for the world community. Everything in the world is affected due to this pandemic right from economy to resources where the economy of major countries of the world are facing recession and resources are surplus with no takers at all. The measures to contain COVID-19 pandemic include lockdown, social distancing, isolation, and home quarantine. Lockdown adopted by the different governments which involve non-functioning of all the industry and manufacturing units. However, as a blessing in disguise, these measures have a positive effect on the environment in terms of reduction in toxic gasses like nitrogen dioxide, aerosols, atmosphere ozone, particulate matter, and improvement in air quality. In this paper, the effect on various environmental parameters like aerosol, ozone, particulate matter, nitrogen dioxide, sulfur dioxide, carbon monoxide, and temperature on India by lockdown due to COVID-19 as a preventive measure has been analyzed.  The work involves the refining and preprocessing of raw data of this year and last year of various harmful pollutants present in the environment along with satellite images from National Aeronautics and Space Administration for comparison of different parameters. It has been observed that with the above adopted measures temperature has been reduced to near about 15 degree Celsius, there is also reduction in humidity i.e. it is reduced to 40%,  particulate matter (PM2.5)  reaches near about normal i.e. 40 g/m3 and carbon monoxide levels has also been  reduced to 10 ppm. The main idea is to emphasize the fact that how the environment is self-healing during the lockdown. And this study will be beneficial to environmentalists and industry professionals to make the future strategy for improving the environment.","PeriodicalId":46495,"journal":{"name":"GLOBAL JOURNAL OF ENVIRONMENTAL SCIENCE AND MANAGEMENT-GJESM","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2020-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48743556","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 28
Statistical analysis and characteristics of hospital medical waste under novel Coronavirus outbreak 新型冠状病毒疫情下医院医疗废弃物的统计分析与特征
IF 3.4 Q1 Social Sciences Pub Date : 2020-08-01 DOI: 10.22034/GJESM.2019.06.SI.03
H. Abu-Qdais, Al-Ghazo, E. M. Alghazo
One of thesources of infection as a result of coronavirus disease treatment is the medical waste generated during the health care activities. Since the registration of the first infected case of coronavirus in Jordan the daily number of patients fluctuated from as low as zero to as high as 40 with a recovery ratio and case fatality risk of 39% and 1.7%, respectively. The main objective of the present study is to carry out statistical analysis and assess the generation rates and the composition of the medical waste generated during the treatment of coronavirus pandemic with reference to a major tertiary care hospital in Jordan. Data onthe daily generated waste, number of the admitted patients and on the amounts of consumables like various personal protective equipment, testing kits, and disinfectant used during the treatment of coronavirus disease was obtained. Data was subjected to descriptive statistical analysis to find the average generation rates, 3 days moving average, as well as the frequency distribution of the generated amounts. During 25 days' period, King Abdullah University Hospital has admitted 95 infected patients by coronavirus. The amount of the average rate of the medical waste generated as a result of coronavirus treatment was found to be 14.16 kg/patient/day and 3.95 kg/bed/day, which are more than tenfold higher than the average generation rate during the regular operational days of the hospital. Frequency analysis of the data revealed that the medical waste generation follows log normal distribution with correlation coefficient of 0.89.  The distribution is distorted to the right and flatter than the normal distribution curve as judged by the skewness and kurtosis coefficients, respectively, which indicates deviation from normality.
冠状病毒治疗的感染源之一是卫生保健活动中产生的医疗废物。自约旦首例冠状病毒感染病例登记以来,每日患者人数从低至零到高至40人,康复率和病死率风险分别为39%和1.7%。本研究的主要目的是参照约旦一家大型三级医院,对冠状病毒大流行治疗过程中产生的医疗废物的产生率和组成进行统计分析和评估。获得了关于每日产生的废物、住院患者人数以及治疗冠状病毒病期间使用的各种个人防护装备、检测包和消毒剂等消耗品数量的数据。对数据进行描述性统计分析,找出平均发电量、3天移动平均值以及发电量的频率分布。在25天的时间里,阿卜杜拉国王大学医院收治了95名冠状病毒感染患者。冠状病毒治疗产生的医疗废物平均产生量为14.16公斤/患者/天,3.95公斤/床位/天,比医院正常运营天数的平均产生量高出10倍以上。数据频次分析显示,医疗废弃物产生量服从对数正态分布,相关系数为0.89。从偏度系数和峰度系数判断,分布向右扭曲,比正态分布曲线平坦,表明偏离正态分布。
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引用次数: 57
The dramatic impact of coronavirus outbreak on air quality: Has it saved as much as it has killed so far? 冠状病毒爆发对空气质量的巨大影响:到目前为止,它挽救的空气质量和造成的空气质量一样多吗?
IF 3.4 Q1 Social Sciences Pub Date : 2020-07-01 DOI: 10.22034/GJESM.2020.03.01
R. Isaifan
The outbreak of coronavirus disease (COVID-19) was first reported from Wuhan, China, on December 31st, 2019. As the number of coronavirus infections has exceeded 100,000 with toll deaths of about 5000 worldwide as of early March, 2020, scientists and researchers are racing to investigate the nature of this virus and evaluate the short and long term effects of this disease. Despite its negative impacts that obliged the World Health Organization to declare COVID-19 epidemic as a Public Health Emergency of International Concern, the rate of mortality of this infection has not exceeded 3.4% globally. On the other hand, the mortality rate caused by ambient air pollution has contributed to 7.6% of all deaths in 2016 worldwide. The outbreak of COVID-19 has forced China to lockdown its industrial activities and hence dropped its NO2 and carbon emissions by 30 and 25%, respectively. This work reports on the first case study that compares the air quality status before and after the crisis. It sheds light on the facts related to the demographics of deaths by gender, age and health status before infection. The historical data on air quality, estimates of annual deaths and its economic burden have been presented and analyzed. The actual daily deaths due to COVID-19 have been obtained from the official records of the daily Situation Reports published by World Health Organization as of March 11th. The rate of mortality due to COVID-19 was impacted by two factors: age and health status. Results show that 75% of deaths were related to cases that had underlying present diseases with the majority aged of 80+ years. The reported figures were compared with the average daily mortality due to poor air quality which reached up to 3287 deaths due to high levels of NO2, O3 and PM. The air quality status before the crisis was compared with the current situation showing that COVID-19 forced-industrial and anthropogenic activities lockdown may have saved more lives by preventing ambient air pollution than by preventing infection.
2019年12月31日,中国武汉首次报告了冠状病毒病(COVID-19)暴发。截至2020年3月初,全球冠状病毒感染人数已超过10万,死亡人数约为5000人,科学家和研究人员正在竞相调查这种病毒的性质,并评估这种疾病的短期和长期影响。尽管其负面影响迫使世界卫生组织宣布COVID-19流行病为国际关注的突发公共卫生事件,但这种感染的全球死亡率并未超过3.4%。另一方面,2016年,环境空气污染造成的死亡率占全球总死亡人数的7.6%。新冠肺炎疫情迫使中国封锁了工业活动,二氧化氮和碳排放量分别下降了30%和25%。这项工作报告了第一个案例研究,比较了危机前后的空气质量状况。它阐明了按性别、年龄和感染前健康状况分列的与死亡人口统计相关的事实。介绍并分析了有关空气质量的历史数据、每年死亡人数估计数及其经济负担。截至3月11日,世界卫生组织每日发布的《形势报告》官方记录显示的新冠肺炎每日实际死亡人数。COVID-19死亡率受年龄和健康状况两个因素的影响。结果显示,75%的死亡与有潜在疾病的病例有关,大多数年龄在80岁以上。报告的数字与空气质量差造成的平均每日死亡率进行了比较,由于高浓度的二氧化氮、臭氧和PM,死亡人数高达3287人。危机前的空气质量状况与目前的情况进行了比较,结果表明,新冠肺炎迫使工业和人为活动封锁可能通过防止环境空气污染而不是预防感染来挽救更多的生命。
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引用次数: 176
Surface runoff estimation in an upper watershed using geo-spatial based soil conservation service-curve number method. 利用基于地理空间的土壤保持服务曲线数法估算上游流域的地表径流。
IF 3.4 Q1 Social Sciences Pub Date : 2020-07-01 DOI: 10.22034/GJESM.2020.03.10
C. Odiji, O. Aderoju, M. C. Ekwe, D. T. Oje, J. O. Imhanfidon
Runoff assessment and estimation is crucial for watershed management as it provides information that is needed to expedite the course of watershed planning and development. The most commonly used model due to its simplicity and versatility in runoff estimation is the soil conservation service curve number developed by the United States Department of Agriculture. The study estimates the surface runoff of Upper Benue watershed using a geospatial based soil conservation service curve number model. Datasets utilized for this purpose are; Rainfall, land use, digitial elevation model and FAO-Soil. The soil and land use data were intersected to create the curve number grid and database. The curve number grid combined with the mean annual rainfall data from 1990 – 2017 was used to estimate runoff. The result revealed that 61.5% of rainfall was direct runoff while 38.5% of the rainfall was retained by tree/plant cover and soil. The average curve number for the normal condition was calculated to be 80.1 while the dry and wet season was 59.6, and 93.2 respectively. The average runoff volume for 27 years was estimated to be 69,887.43mm3. A correlation coefficient of 0.79 was found for the relationship between rainfall and runoff. The research highlights the importance of geospatial technique when integrated with soil conservation service curve number to estimate runoff conditions in Upper Benue Watershed.
径流评估和估算对流域管理至关重要,因为它提供了加快流域规划和发展进程所需的信息。由于其在径流估算中的简单性和多功能性,最常用的模型是美国农业部开发的土壤保持服务曲线数。该研究使用基于地理空间的土壤保持服务曲线数模型估计上贝努埃流域的地表径流。用于此目的的数据集包括:;降雨量、土地利用、数字高程模型和粮农组织土壤。将土壤和土地利用数据进行交叉,以创建曲线编号网格和数据库。曲线数字网格结合1990-2017年的年平均降雨量数据用于估算径流量。结果表明,61.5%的降雨是直接径流,38.5%的降雨被树木/植物覆盖和土壤截留。正常情况下的平均曲线数为80.1,而旱季和雨季分别为59.6和93.2。27年的平均径流量估计为69887.43mm3。降雨量与径流量之间的相关系数为0.79。该研究强调了地理空间技术与土壤保持服务曲线数相结合来估计贝努埃上游流域径流条件的重要性。
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引用次数: 0
Sediment microbiomes associated with critical habitat of the juvenile American horseshoe crab; limulus polyphemus. 和幼年美国鲎关键栖息地相关的沉积物微生物组;鲎。
IF 3.4 Q1 Social Sciences Pub Date : 2020-07-01 DOI: 10.22034/GJESM.2020.03.03
J. Petersen, C. P. Colon, J. Joyner
Plumb Beach, Brooklyn, New York in USA is an important horseshoe crab breeding and nursery ground that has experienced substantial anthropogenic influence, including pollution, erosion and subsequent restoration. Since little is known about the relationship between sediment microbial communities and juvenile horseshoe crab survival, next generation sequencing was used to characterize and compare the sediment microbiome of three distinct areas of Plumb Beach:- a tidal creek with abundant juveniles, East Beach with moderate number of juveniles, and West Beach- a highly disturbed area where juvenile crabs are rarely seen. The microbiome of juvenile crab intestinal content (both dissected gut content and fecal flush content) from the tidal creek site was also examined. The results showed that in our 2017 survey, the overall dominant sediment orders at all beach sites were Vibrionales (30%), Flavobacteriales (22%) and Alteromonadales (21%). Although alpha diversity was similar among the three beach sites, Bray-Curtis distances assessed by Permanova revealed significant differences in Beta diversity, with a unique microbial assemblage found in the tidal creek. Both crab gut and fecal flush samples did not sequence well, showing low species diversity and very high variability. This study is the first to use next generation sequencing to characterize Plumb Beach sediment microbes and the first attempt to examine the gut microbiome of juvenile horseshoe crabs. This information will contribute to understanding the relationships between sediment microbial assemblages and juvenile crab populations within this important urban habitat.
美国纽约州布鲁克林的普拉姆海滩是一个重要的鲎繁殖地和苗圃,受到了大量的人为影响,包括污染、侵蚀和随后的恢复。由于人们对沉积物微生物群落与鲎幼体存活之间的关系知之甚少,因此使用下一代测序来表征和比较Plumb Beach三个不同区域的沉积物微生物组:一条有大量幼体的潮汐小溪,东海滩有中等数量的幼体,以及西海滩,这是一个非常混乱的地区,很少看到幼年螃蟹。还检查了潮溪现场幼蟹肠道内容物的微生物组(包括解剖的肠道内容物和粪便冲洗内容物)。结果显示,在我们2017年的调查中,所有海滩站点的总体主导沉积物顺序为弧菌类(30%)、黄杆菌类(22%)和Alteromonadales(21%)。尽管三个海滩地点的阿尔法多样性相似,但Permanova评估的Bray-Curtis距离显示,贝塔多样性存在显著差异,在潮汐小溪中发现了独特的微生物群落。螃蟹肠道和粪便冲洗样本的序列都不好,显示出低物种多样性和非常高的变异性。这项研究首次使用下一代测序来表征Plumb Beach沉积物微生物,也是首次尝试检测幼年鲎的肠道微生物组。这些信息将有助于了解这一重要城市栖息地内沉积物微生物组合与幼蟹种群之间的关系。
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引用次数: 2
Hydrodynamics and water quality assessment of a coastal lagoon using environmental fluid dynamics code explorer modeling system. 基于环境流体动力学代码explorer建模系统的沿海泻湖水动力与水质评价。
IF 3.4 Q1 Social Sciences Pub Date : 2020-07-01 DOI: 10.22034/GJESM.2020.03.02
F. Torres-Bejarano, A. Torregroza-Espinosa, Eliana Martínez-Mera, D. Castañeda-Valbuena, M. P. Tejera-Gonzalez
Cienaga de Mallorquin is a coastal lagoon designated as a RAMSAR site due to its ecological regional and international importance. In this work, the environmental fluid dynamics code explorer modeling system was implemented to determine the spatio-temporal distribution of temperature, dissolved oxygen, chemical oxygen demand and nutrient levels, and assess the trophic status of Cienaga de Mallorquin. The model was set up with field measurement data taken during transition period and wet season, and secondary information obtained from local authorities and environmental agencies. The results of model simulations were calibrated and verified by the root mean square error method, achieving a consistent fit for all considered variables. Average velocities were between 0.006 m/s and 0.013 m/s during the analyzed periods. The temperature was higher in the wet season than in the transition period (29°C and 31.5°C, respectively). The dissolved oxygen was similar in both periods (6.6 and 6.7 mg/L). NO3 concentrations were higher during the transition period (3.28 mg/L), with a minimum of 1.76 mg/L and a maximum of 5.09 mg/L. The lowest NO3 concentrations were found in the area influenced by the connection with the Caribbean Sea. PO4 concentrations in the wet season were lower than in the transition period (0.20 mg/L). Finally, Cienaga de Mallorquin exhibits high productivity levels with Trophic State Index > 50 and temporal variations of mesotrophic to eutrophic. The use of Trophic State Index is useful for the management of water body eutrophication and productivity, making it particularly important in aquatic ecosystems.
Cienaga de Mallorquin是一个沿海泻湖,由于其生态区域和国际重要性而被指定为RAMSAR遗址。本文利用环境流体动力学代码explorer建模系统,确定了Cienaga de Mallorquin的温度、溶解氧、化学需氧量和营养水平的时空分布,并对其营养状况进行了评估。该模型的建立采用了过渡时期和雨季的野外测量数据,以及当地政府和环境部门提供的二次信息。模型模拟结果通过均方根误差方法进行校准和验证,实现了所有考虑变量的一致拟合。在分析期间,平均速度在0.006 ~ 0.013 m/s之间。雨季气温高于过渡期,分别为29°C和31.5°C。溶解氧在两个时期相似(6.6和6.7 mg/L)。过渡时期NO3浓度较高,为3.28 mg/L,最低为1.76 mg/L,最高为5.09 mg/L。NO3浓度最低的地区是受与加勒比海连接影响的地区。雨季PO4浓度低于过渡期(0.20 mg/L)。最后,Cienaga de Mallorquin在营养状态指数bb50和中营养化到富营养化的时间变化中显示出较高的生产力水平。营养状态指数的使用有助于水体富营养化和生产力的管理,使其在水生生态系统中尤为重要。
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引用次数: 10
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GLOBAL JOURNAL OF ENVIRONMENTAL SCIENCE AND MANAGEMENT-GJESM
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