Pub Date : 2024-09-01Epub Date: 2024-06-17DOI: 10.1007/s13246-024-01436-7
Nirvadesh Ramkishore, James Crocker, Ruth Martin, Kenneth S Yap, Zoe Brady
Performance testing of gamma cameras and single photon computed tomography/computed tomography (SPECT/CT) systems is not subject to regulatory requirements across states and territories in Australia. Internationally recognised testing standards from organisations such as the National Electrical Manufacturers Association (NEMA) describe methodologies for recommended tests. However, variations exist in suggested quality control (QC) schedules from professional bodies such as the Australia and New Zealand Society of Nuclear Medicine (ANZSNM). In this study, a survey was conducted to benchmark current QC programs across a selected sample of eight standalone and networked Australian public hospitals. Vendor-specific flood-field uniformity (intrinsic or extrinsic/system) verification without photomultiplier (PMT) tuning and CT QC were performed at all sites. Weekly and monthly PMT tuning followed by intrinsic flood-field verifications were performed at most sites. At least half of the sites performed monthly centre of rotation (COR) offset verifications. SPECT/CT alignment calibrations and verifications were undertaken by service engineers at all sites, and periodic verifications were performed by local staff at varying frequencies. Variations were observed for other periodic QC tests such as spatial resolution and planar sensitivity. Similarly, variations were observed for tests specific to whole-body systems and SPECT systems. Most sites checked daily and periodic QC results against pass/fail criteria set by vendors. Additional analyses of the QC results, including trend analysis and periodic reviews, were not common practice. The lack of regulatory requirements is likely to have led to variations in QC tests that are generally either harder to perform or are more labour intensive.
{"title":"A survey of gamma camera and SPECT/CT quality control programs across a sample of public hospitals in Australia.","authors":"Nirvadesh Ramkishore, James Crocker, Ruth Martin, Kenneth S Yap, Zoe Brady","doi":"10.1007/s13246-024-01436-7","DOIUrl":"10.1007/s13246-024-01436-7","url":null,"abstract":"<p><p>Performance testing of gamma cameras and single photon computed tomography/computed tomography (SPECT/CT) systems is not subject to regulatory requirements across states and territories in Australia. Internationally recognised testing standards from organisations such as the National Electrical Manufacturers Association (NEMA) describe methodologies for recommended tests. However, variations exist in suggested quality control (QC) schedules from professional bodies such as the Australia and New Zealand Society of Nuclear Medicine (ANZSNM). In this study, a survey was conducted to benchmark current QC programs across a selected sample of eight standalone and networked Australian public hospitals. Vendor-specific flood-field uniformity (intrinsic or extrinsic/system) verification without photomultiplier (PMT) tuning and CT QC were performed at all sites. Weekly and monthly PMT tuning followed by intrinsic flood-field verifications were performed at most sites. At least half of the sites performed monthly centre of rotation (COR) offset verifications. SPECT/CT alignment calibrations and verifications were undertaken by service engineers at all sites, and periodic verifications were performed by local staff at varying frequencies. Variations were observed for other periodic QC tests such as spatial resolution and planar sensitivity. Similarly, variations were observed for tests specific to whole-body systems and SPECT systems. Most sites checked daily and periodic QC results against pass/fail criteria set by vendors. Additional analyses of the QC results, including trend analysis and periodic reviews, were not common practice. The lack of regulatory requirements is likely to have led to variations in QC tests that are generally either harder to perform or are more labour intensive.</p>","PeriodicalId":48490,"journal":{"name":"Physical and Engineering Sciences in Medicine","volume":" ","pages":"1153-1166"},"PeriodicalIF":2.4,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141332289","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01Epub Date: 2024-03-21DOI: 10.1007/s13246-024-01408-x
Fereshteh Yousefirizi, Isaac Shiri, Joo Hyun O, Ingrid Bloise, Patrick Martineau, Don Wilson, François Bénard, Laurie H Sehn, Kerry J Savage, Habib Zaidi, Carlos F Uribe, Arman Rahmim
Manual segmentation poses a time-consuming challenge for disease quantification, therapy evaluation, treatment planning, and outcome prediction. Convolutional neural networks (CNNs) hold promise in accurately identifying tumor locations and boundaries in PET scans. However, a major hurdle is the extensive amount of supervised and annotated data necessary for training. To overcome this limitation, this study explores semi-supervised approaches utilizing unlabeled data, specifically focusing on PET images of diffuse large B-cell lymphoma (DLBCL) and primary mediastinal large B-cell lymphoma (PMBCL) obtained from two centers. We considered 2-[18F]FDG PET images of 292 patients PMBCL (n = 104) and DLBCL (n = 188) (n = 232 for training and validation, and n = 60 for external testing). We harnessed classical wisdom embedded in traditional segmentation methods, such as the fuzzy clustering loss function (FCM), to tailor the training strategy for a 3D U-Net model, incorporating both supervised and unsupervised learning approaches. Various supervision levels were explored, including fully supervised methods with labeled FCM and unified focal/Dice loss, unsupervised methods with robust FCM (RFCM) and Mumford-Shah (MS) loss, and semi-supervised methods combining FCM with supervised Dice loss (MS + Dice) or labeled FCM (RFCM + FCM). The unified loss function yielded higher Dice scores (0.73 ± 0.11; 95% CI 0.67-0.8) than Dice loss (p value < 0.01). Among the semi-supervised approaches, RFCM + αFCM (α = 0.3) showed the best performance, with Dice score of 0.68 ± 0.10 (95% CI 0.45-0.77), outperforming MS + αDice for any supervision level (any α) (p < 0.01). Another semi-supervised approach with MS + αDice (α = 0.2) achieved Dice score of 0.59 ± 0.09 (95% CI 0.44-0.76) surpassing other supervision levels (p < 0.01). Given the time-consuming nature of manual delineations and the inconsistencies they may introduce, semi-supervised approaches hold promise for automating medical imaging segmentation workflows.
人工分割对疾病量化、治疗评估、治疗计划和结果预测都是一项耗时的挑战。卷积神经网络(CNN)有望准确识别 PET 扫描中的肿瘤位置和边界。然而,训练所需的大量监督和注释数据是一大障碍。为了克服这一局限性,本研究探索了利用无标记数据的半监督方法,特别关注从两个中心获得的弥漫大 B 细胞淋巴瘤(DLBCL)和原发性纵隔大 B 细胞淋巴瘤(PMBCL)的 PET 图像。我们考虑了 292 名 PMBCL(n = 104)和 DLBCL(n = 188)患者的 2-[18F]FDG PET 图像(n = 232 用于训练和验证,n = 60 用于外部测试)。我们利用传统分割方法(如模糊聚类损失函数 (FCM))中蕴含的经典智慧,为三维 U-Net 模型量身定制训练策略,同时采用监督和非监督学习方法。我们探索了各种监督水平,包括使用标记 FCM 和统一焦点/骰子损失的完全监督方法、使用鲁棒 FCM (RFCM) 和 Mumford-Shah (MS) 损失的无监督方法,以及将 FCM 与监督骰子损失(MS + Dice)或标记 FCM(RFCM + FCM)相结合的半监督方法。统一损失函数的 Dice 得分(0.73 ± 0.11;95% CI 0.67-0.8)高于 Dice 损失(p 值为 0.01)。
{"title":"Semi-supervised learning towards automated segmentation of PET images with limited annotations: application to lymphoma patients.","authors":"Fereshteh Yousefirizi, Isaac Shiri, Joo Hyun O, Ingrid Bloise, Patrick Martineau, Don Wilson, François Bénard, Laurie H Sehn, Kerry J Savage, Habib Zaidi, Carlos F Uribe, Arman Rahmim","doi":"10.1007/s13246-024-01408-x","DOIUrl":"10.1007/s13246-024-01408-x","url":null,"abstract":"<p><p>Manual segmentation poses a time-consuming challenge for disease quantification, therapy evaluation, treatment planning, and outcome prediction. Convolutional neural networks (CNNs) hold promise in accurately identifying tumor locations and boundaries in PET scans. However, a major hurdle is the extensive amount of supervised and annotated data necessary for training. To overcome this limitation, this study explores semi-supervised approaches utilizing unlabeled data, specifically focusing on PET images of diffuse large B-cell lymphoma (DLBCL) and primary mediastinal large B-cell lymphoma (PMBCL) obtained from two centers. We considered 2-[<sup>18</sup>F]FDG PET images of 292 patients PMBCL (n = 104) and DLBCL (n = 188) (n = 232 for training and validation, and n = 60 for external testing). We harnessed classical wisdom embedded in traditional segmentation methods, such as the fuzzy clustering loss function (FCM), to tailor the training strategy for a 3D U-Net model, incorporating both supervised and unsupervised learning approaches. Various supervision levels were explored, including fully supervised methods with labeled FCM and unified focal/Dice loss, unsupervised methods with robust FCM (RFCM) and Mumford-Shah (MS) loss, and semi-supervised methods combining FCM with supervised Dice loss (MS + Dice) or labeled FCM (RFCM + FCM). The unified loss function yielded higher Dice scores (0.73 ± 0.11; 95% CI 0.67-0.8) than Dice loss (p value < 0.01). Among the semi-supervised approaches, RFCM + αFCM (α = 0.3) showed the best performance, with Dice score of 0.68 ± 0.10 (95% CI 0.45-0.77), outperforming MS + αDice for any supervision level (any α) (p < 0.01). Another semi-supervised approach with MS + αDice (α = 0.2) achieved Dice score of 0.59 ± 0.09 (95% CI 0.44-0.76) surpassing other supervision levels (p < 0.01). Given the time-consuming nature of manual delineations and the inconsistencies they may introduce, semi-supervised approaches hold promise for automating medical imaging segmentation workflows.</p>","PeriodicalId":48490,"journal":{"name":"Physical and Engineering Sciences in Medicine","volume":" ","pages":"833-849"},"PeriodicalIF":2.4,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140186053","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01Epub Date: 2024-03-25DOI: 10.1007/s13246-024-01407-y
Jeannie Hsiu Ding Wong, Wan Hazlinda Ismail
The use of Al2O3:C-based optically stimulated luminescent dosimeters (OSLDs) in diagnostic X-ray is a challenge because of their energy dependence (ED) and variability of element sensitivity factors (ESFs). This study aims to develop a method to determine ED and ESFs of Landauer nanoDot™ OSLDs for clinical X-ray and investigate the uncertainties associated with ESF and ED correction factors. An area of 2 × 2 cm2 at the central axis of the X-ray field was used to establish the ESFs. A total of 80 OSLDs were categorized into "controlled" (n = 40) and "less-controlled" groups (n = 40). The ESFs of the OSLDs were determined using an 80 kVp X-ray beam quality in free-air geometry. The OSLDs were cross-calibrated with an ion chamber to establish the average calibration coefficient and ESFs. The OSLDs were then irradiated at tube potentials ranging from 50 to 150 kVp to determine their ED. The uniformity of the X-ray field was ± 1.5% at 100 cm source-to-surface distance. The batch homogeneities of user-defined ESFs were 2.4% and 8.7% for controlled and less-controlled OSLDs, respectively. The ED of OSLDs ranged from 1.125 to 0.812 as tube potential increased from 50 kVp to 150 kVp. The total uncertainty of OSLDs, without ED correction, could be as high as 16%. After applying ESF and ED correction, the total uncertainties were reduced to 6.3% in controlled OLSDs and 11.6% in less-controlled ones. OSLDs corrected with user-defined ESF and ED can reduce the uncertainty of dose measurements in diagnostic X-rays, particularly in managing less-controlled OSLDs.
由于 Al2O3:C 基光激发发光剂量计(OSLD)的能量依赖性(ED)和元素灵敏度系数(ESF)的可变性,将其用于诊断 X 射线是一项挑战。本研究旨在开发一种方法来确定用于临床 X 射线的 Landauer nanoDot™ OSLD 的 ED 和 ESF,并研究与 ESF 和 ED 校正因子相关的不确定性。X 射线场中心轴上 2 × 2 cm2 的区域用于确定 ESF。共有80例OSLD被分为 "控制 "组(40例)和 "非控制 "组(40例)。OSLD 的 ESF 是在自由空气几何条件下使用 80 kVp 的 X 射线束质量测定的。用离子室对 OSLD 进行交叉校准,以确定平均校准系数和 ESF。然后在 50 至 150 kVp 的管电位下对 OSLD 进行辐照,以确定其 ED。在 100 厘米的源到表面距离上,X 射线场的均匀性为 ± 1.5%。用户定义的 ESF 的批次均匀度分别为 2.4% 和 8.7%。当管电位从 50 kVp 上升到 150 kVp 时,OSLD 的 ED 值从 1.125 到 0.812 不等。在没有进行 ED 校正的情况下,OSLD 的总不确定性可高达 16%。应用 ESF 和 ED 校正后,受控 OLSD 的总不确定性降低到 6.3%,而受控程度较低的 OLSD 的总不确定性降低到 11.6%。用用户定义的 ESF 和 ED 修正 OSLD 可以减少诊断 X 射线剂量测量的不确定性,尤其是在管理控制较差的 OSLD 时。
{"title":"Addressing challenges in diagnostic X-ray dosimetry: uncertainties and corrections for Al<sub>2</sub>O<sub>3</sub>:C-based optically stimulated luminescent dosimeters.","authors":"Jeannie Hsiu Ding Wong, Wan Hazlinda Ismail","doi":"10.1007/s13246-024-01407-y","DOIUrl":"10.1007/s13246-024-01407-y","url":null,"abstract":"<p><p>The use of Al<sub>2</sub>O<sub>3</sub>:C-based optically stimulated luminescent dosimeters (OSLDs) in diagnostic X-ray is a challenge because of their energy dependence (ED) and variability of element sensitivity factors (ESFs). This study aims to develop a method to determine ED and ESFs of Landauer nanoDot™ OSLDs for clinical X-ray and investigate the uncertainties associated with ESF and ED correction factors. An area of 2 × 2 cm<sup>2</sup> at the central axis of the X-ray field was used to establish the ESFs. A total of 80 OSLDs were categorized into \"controlled\" (n = 40) and \"less-controlled\" groups (n = 40). The ESFs of the OSLDs were determined using an 80 kVp X-ray beam quality in free-air geometry. The OSLDs were cross-calibrated with an ion chamber to establish the average calibration coefficient and ESFs. The OSLDs were then irradiated at tube potentials ranging from 50 to 150 kVp to determine their ED. The uniformity of the X-ray field was ± 1.5% at 100 cm source-to-surface distance. The batch homogeneities of user-defined ESFs were 2.4% and 8.7% for controlled and less-controlled OSLDs, respectively. The ED of OSLDs ranged from 1.125 to 0.812 as tube potential increased from 50 kVp to 150 kVp. The total uncertainty of OSLDs, without ED correction, could be as high as 16%. After applying ESF and ED correction, the total uncertainties were reduced to 6.3% in controlled OLSDs and 11.6% in less-controlled ones. OSLDs corrected with user-defined ESF and ED can reduce the uncertainty of dose measurements in diagnostic X-rays, particularly in managing less-controlled OSLDs.</p>","PeriodicalId":48490,"journal":{"name":"Physical and Engineering Sciences in Medicine","volume":" ","pages":"821-832"},"PeriodicalIF":2.4,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140289314","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01Epub Date: 2024-05-16DOI: 10.1007/s13246-024-01433-w
Amit Kumar Shaw, Divya Khurana, Sanjeev Soni
Plasmonic photothermal therapy (PPTT) involves the use of nanoparticles and near-infrared radiation to attain a temperature above 50 °C within the tumor for its thermal damage. PPTT is largely explored for superficial tumors, and its potential to treat deeper subsurface tumors is dealt feebly, requiring the assessment of thermal damage for such tumors. In this paper, the extent of thermal damage is numerically analyzed for PPTT of invasive ductal carcinoma (IDC) situated at 3-9 mm depths. The developed numerical model is validated with suitable tissue-tumor mimicking phantoms. Tumor (IDC) embedded with gold nanorods (GNRs) is subjected to broadband near-infrared radiation. The effect of various GNRs concentrations and their spatial distributions [viz. uniform distribution, intravenous delivery (peripheral distribution) and intratumoral delivery (localized distribution)] are investigated for thermal damage for subsurface tumors situated at various depths. Results show that lower GNRs concentrations lead to more uniform internal heat generation, eventually resulting in uniform temperature rise. Also, the peripheral distribution of nanoparticles provides a more uniform spatial temperature rise within the tumor. Overall, it is concluded that PPTT has potential to induce thermal damage for subsurface tumors, at depths of upto 9 mm, by proper choice of nanoparticle distribution, dose/concentration and irradiation parameters based on the tumor location. Moreover, intravenous administration of nanoparticles seems a good choice for shallower tumors, while for deeper tumors, uniform distribution is required to attain the necessary thermal damage. In the future, the algorithm may be extended further, involving 3D patient-specific tumors and through mice model-based experiments.
{"title":"Assessment of thermal damage for plasmonic photothermal therapy of subsurface tumors.","authors":"Amit Kumar Shaw, Divya Khurana, Sanjeev Soni","doi":"10.1007/s13246-024-01433-w","DOIUrl":"10.1007/s13246-024-01433-w","url":null,"abstract":"<p><p>Plasmonic photothermal therapy (PPTT) involves the use of nanoparticles and near-infrared radiation to attain a temperature above 50 °C within the tumor for its thermal damage. PPTT is largely explored for superficial tumors, and its potential to treat deeper subsurface tumors is dealt feebly, requiring the assessment of thermal damage for such tumors. In this paper, the extent of thermal damage is numerically analyzed for PPTT of invasive ductal carcinoma (IDC) situated at 3-9 mm depths. The developed numerical model is validated with suitable tissue-tumor mimicking phantoms. Tumor (IDC) embedded with gold nanorods (GNRs) is subjected to broadband near-infrared radiation. The effect of various GNRs concentrations and their spatial distributions [viz. uniform distribution, intravenous delivery (peripheral distribution) and intratumoral delivery (localized distribution)] are investigated for thermal damage for subsurface tumors situated at various depths. Results show that lower GNRs concentrations lead to more uniform internal heat generation, eventually resulting in uniform temperature rise. Also, the peripheral distribution of nanoparticles provides a more uniform spatial temperature rise within the tumor. Overall, it is concluded that PPTT has potential to induce thermal damage for subsurface tumors, at depths of upto 9 mm, by proper choice of nanoparticle distribution, dose/concentration and irradiation parameters based on the tumor location. Moreover, intravenous administration of nanoparticles seems a good choice for shallower tumors, while for deeper tumors, uniform distribution is required to attain the necessary thermal damage. In the future, the algorithm may be extended further, involving 3D patient-specific tumors and through mice model-based experiments.</p>","PeriodicalId":48490,"journal":{"name":"Physical and Engineering Sciences in Medicine","volume":" ","pages":"1107-1121"},"PeriodicalIF":2.4,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140945397","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
To propose a style transfer model for multi-contrast magnetic resonance imaging (MRI) images with a cycle-consistent generative adversarial network (CycleGAN) and evaluate the image quality and prognosis prediction performance for glioblastoma (GBM) patients from the extracted radiomics features. Style transfer models of T1 weighted MRI image (T1w) to T2 weighted MRI image (T2w) and T2w to T1w with CycleGAN were constructed using the BraTS dataset. The style transfer model was validated with the Cancer Genome Atlas Glioblastoma Multiforme (TCGA-GBM) dataset. Moreover, imaging features were extracted from real and synthesized images. These features were transformed to rad-scores by the least absolute shrinkage and selection operator (LASSO)-Cox regression. The prognosis performance was estimated by the Kaplan-Meier method. For the accuracy of the image quality of the real and synthesized MRI images, the MI, RMSE, PSNR, and SSIM were 0.991 ± 2.10 , 2.79 ± 0.16, 40.16 ± 0.38, and 0.995 ± 2.11 , for T2w, and .992 ± 2.63 , 2.49 ± 6.89 , 40.51 ± 0.22, and 0.993 ± 3.40 for T1w, respectively. The survival time had a significant difference between good and poor prognosis groups for both real and synthesized T2w (p < 0.05). However, the survival time had no significant difference between good and poor prognosis groups for both real and synthesized T1w. On the other hand, there was no significant difference between the real and synthesized T2w in both good and poor prognoses. The results of T1w were similar in the point that there was no significant difference between the real and synthesized T1w. It was found that the synthesized image could be used for prognosis prediction. The proposed prognostic model using CycleGAN could reduce the cost and time of image scanning, leading to a promotion to build the patient's outcome prediction with multi-contrast images.
{"title":"Prediction of prognosis in glioblastoma with radiomics features extracted by synthetic MRI images using cycle-consistent GAN.","authors":"Hisanori Yoshimura, Daisuke Kawahara, Akito Saito, Shuichi Ozawa, Yasushi Nagata","doi":"10.1007/s13246-024-01443-8","DOIUrl":"10.1007/s13246-024-01443-8","url":null,"abstract":"<p><p>To propose a style transfer model for multi-contrast magnetic resonance imaging (MRI) images with a cycle-consistent generative adversarial network (CycleGAN) and evaluate the image quality and prognosis prediction performance for glioblastoma (GBM) patients from the extracted radiomics features. Style transfer models of T1 weighted MRI image (T1w) to T2 weighted MRI image (T2w) and T2w to T1w with CycleGAN were constructed using the BraTS dataset. The style transfer model was validated with the Cancer Genome Atlas Glioblastoma Multiforme (TCGA-GBM) dataset. Moreover, imaging features were extracted from real and synthesized images. These features were transformed to rad-scores by the least absolute shrinkage and selection operator (LASSO)-Cox regression. The prognosis performance was estimated by the Kaplan-Meier method. For the accuracy of the image quality of the real and synthesized MRI images, the MI, RMSE, PSNR, and SSIM were 0.991 ± 2.10 <math><mrow><mo>×</mo> <msup><mrow><mn>10</mn></mrow> <mrow><mo>-</mo> <mn>4</mn></mrow> </msup> </mrow> </math> , 2.79 ± 0.16, 40.16 ± 0.38, and 0.995 ± 2.11 <math><mrow><mo>×</mo> <msup><mrow><mn>10</mn></mrow> <mrow><mo>-</mo> <mn>4</mn></mrow> </msup> </mrow> </math> , for T2w, and .992 ± 2.63 <math><mrow><mo>×</mo> <msup><mrow><mn>10</mn></mrow> <mrow><mo>-</mo> <mn>4</mn></mrow> </msup> </mrow> </math> , 2.49 ± 6.89 <math><mrow><mo>×</mo> <msup><mrow><mn>10</mn></mrow> <mrow><mo>-</mo> <mn>2</mn></mrow> </msup> </mrow> </math> , 40.51 ± 0.22, and 0.993 ± 3.40 <math><mrow><mo>×</mo> <msup><mrow><mn>10</mn></mrow> <mrow><mo>-</mo> <mn>4</mn></mrow> </msup> </mrow> </math> for T1w, respectively. The survival time had a significant difference between good and poor prognosis groups for both real and synthesized T2w (p < 0.05). However, the survival time had no significant difference between good and poor prognosis groups for both real and synthesized T1w. On the other hand, there was no significant difference between the real and synthesized T2w in both good and poor prognoses. The results of T1w were similar in the point that there was no significant difference between the real and synthesized T1w. It was found that the synthesized image could be used for prognosis prediction. The proposed prognostic model using CycleGAN could reduce the cost and time of image scanning, leading to a promotion to build the patient's outcome prediction with multi-contrast images.</p>","PeriodicalId":48490,"journal":{"name":"Physical and Engineering Sciences in Medicine","volume":" ","pages":"1227-1243"},"PeriodicalIF":2.4,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11408565/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141332291","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01Epub Date: 2024-06-20DOI: 10.1007/s13246-024-01444-7
Monika Saraswat, A K Wadhwani, Sulochana Wadhwani
The ECG is a crucial tool in the medical field for recording the heartbeat signal over time, aiding in the identification of various cardiac diseases. Commonly, the interpretation of ECGs necessitates specialized knowledge. However, this paper explores the application of machine learning algorithms and deep learning algorithm to autonomously identify cardiac diseases in diabetic patients in the absence of expert intervention. Two models are introduced in this study: The MLP model effectively distinguishes between individuals with heart diseases and those without, achieving a high level of accuracy. Subsequently, the deep CNN model further refines the identification of specific cardiac conditions. The PTB-Diagnostic ECG dataset commonly used in the field of biomedical signal processing and machine learning, particularly for tasks related to electrocardiogram (ECG) analysis. a widely recognized dataset in the field, is employed for training, testing, and validation of both the MLP and CNN models. This dataset comprises a diverse range of ECG recordings, providing a comprehensive representation of cardiac conditions. The proposed models feature two hidden layers with weights and biases in the MLP, and a three-layer CNN, facilitating the mapping of ECG data to different disease classes. The experimental results demonstrate that the MLP and deep CNN based models attain accuracy levels of up to 90.0% and 98.35%, and sensitivity 97.8%, 95.77%, specificity 88.9%, 96.3% F1-Score 93.13%, 95.84% respectively. These outcomes underscore the efficacy of deep learning approaches in automating the diagnosis of cardiac diseases through ECG analysis, showcasing the potential for accurate and efficient healthcare solutions.
{"title":"Intelligent deep model based on convolutional neural network's and multi-layer perceptron to classify cardiac abnormality in diabetic patients.","authors":"Monika Saraswat, A K Wadhwani, Sulochana Wadhwani","doi":"10.1007/s13246-024-01444-7","DOIUrl":"10.1007/s13246-024-01444-7","url":null,"abstract":"<p><p>The ECG is a crucial tool in the medical field for recording the heartbeat signal over time, aiding in the identification of various cardiac diseases. Commonly, the interpretation of ECGs necessitates specialized knowledge. However, this paper explores the application of machine learning algorithms and deep learning algorithm to autonomously identify cardiac diseases in diabetic patients in the absence of expert intervention. Two models are introduced in this study: The MLP model effectively distinguishes between individuals with heart diseases and those without, achieving a high level of accuracy. Subsequently, the deep CNN model further refines the identification of specific cardiac conditions. The PTB-Diagnostic ECG dataset commonly used in the field of biomedical signal processing and machine learning, particularly for tasks related to electrocardiogram (ECG) analysis. a widely recognized dataset in the field, is employed for training, testing, and validation of both the MLP and CNN models. This dataset comprises a diverse range of ECG recordings, providing a comprehensive representation of cardiac conditions. The proposed models feature two hidden layers with weights and biases in the MLP, and a three-layer CNN, facilitating the mapping of ECG data to different disease classes. The experimental results demonstrate that the MLP and deep CNN based models attain accuracy levels of up to 90.0% and 98.35%, and sensitivity 97.8%, 95.77%, specificity 88.9%, 96.3% F1-Score 93.13%, 95.84% respectively. These outcomes underscore the efficacy of deep learning approaches in automating the diagnosis of cardiac diseases through ECG analysis, showcasing the potential for accurate and efficient healthcare solutions.</p>","PeriodicalId":48490,"journal":{"name":"Physical and Engineering Sciences in Medicine","volume":" ","pages":"1245-1258"},"PeriodicalIF":2.4,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141427989","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01Epub Date: 2024-03-26DOI: 10.1007/s13246-024-01409-w
Fawzia Abdien Ali Abdulla, Aşkin Demirkol
Breast cancer is the second leading cause of death for women worldwide, and detecting cancer at an early stage increases the survival rate by 97%. In this study, a novel textile-based ultrawideband (UWB) microstrip patch antenna was designed and modeled to work in the 2-11.6 GHz frequency range and a simulation was used to test its performance in early breast cancer detection. The antenna was designed with an overall size of 31*31 mm using a denim substrate and 100% metal polyamide-based fabric with copper, silver, and nickel to provide comfort for the wearer. The designed antenna was tested in four numerical breast models. The models ranged from simple tumor-free to complex models with small tumors. The size, structure, and position of the tumor were modified to test the suggested ability of the antenna to detect cancers with different shapes, sizes, and positions. The specific absorption rate (SAR), return loss (S11), and voltage standing wave ratio (VSWR) were calculated for each model to measure the antenna performance. The simulation results showed that SAR values were between 1.6 and 2 W/g (10 g SAR) and were within the allowed range for medical applications. Additionally, the VSWR remained in an acceptable range from 1.15 to 2. Depending on the size and location of the tumor, the antenna return losses of the four models ranged from 36 to 18.5 dB. The effect of bending was tested to determine the flexibility. The antenna proved to be highly effective and capable of detecting small tumors with diameters of up to 2 mm.
乳腺癌是全球妇女的第二大死因,而早期发现癌症可将存活率提高 97%。本研究设计并模拟了一种新型纺织品超宽带(UWB)微带贴片天线,其工作频率范围为 2-11.6 GHz,并对其在早期乳腺癌检测中的性能进行了仿真测试。天线设计的整体尺寸为 31*31 mm 2,采用牛仔布基材和含铜、银和镍的 100% 金属聚酰胺基织物,为佩戴者提供舒适感。设计的天线在四个乳房模型中进行了测试。这些模型既有简单的无肿瘤模型,也有复杂的有小肿瘤的模型。对肿瘤的大小、结构和位置进行了修改,以测试天线检测不同形状、大小和位置的癌症的能力。计算了每个模型的比吸收率(SAR)、回波损耗(S11)和电压驻波比(VSWR),以衡量天线的性能。仿真结果表明,SAR 值介于 1.6 和 2 W/g 之间(10 g SAR),在医疗应用的允许范围内。此外,驻波比保持在 1.15 到 2 的可接受范围内。根据肿瘤的大小和位置,四个模型的天线回波损耗在 - 36 到 - 18.5 dB 之间。对弯曲的影响进行了测试,以确定其灵活性。事实证明,该天线非常有效,能够探测直径达 2 毫米的小肿瘤。
{"title":"A novel textile-based UWB patch antenna for breast cancer imaging.","authors":"Fawzia Abdien Ali Abdulla, Aşkin Demirkol","doi":"10.1007/s13246-024-01409-w","DOIUrl":"10.1007/s13246-024-01409-w","url":null,"abstract":"<p><p>Breast cancer is the second leading cause of death for women worldwide, and detecting cancer at an early stage increases the survival rate by 97%. In this study, a novel textile-based ultrawideband (UWB) microstrip patch antenna was designed and modeled to work in the 2-11.6 GHz frequency range and a simulation was used to test its performance in early breast cancer detection. The antenna was designed with an overall size of 31*31 mm <math><msup><mrow></mrow> <mn>2</mn></msup> </math> using a denim substrate and 100% metal polyamide-based fabric with copper, silver, and nickel to provide comfort for the wearer. The designed antenna was tested in four numerical breast models. The models ranged from simple tumor-free to complex models with small tumors. The size, structure, and position of the tumor were modified to test the suggested ability of the antenna to detect cancers with different shapes, sizes, and positions. The specific absorption rate (SAR), return loss (S11), and voltage standing wave ratio (VSWR) were calculated for each model to measure the antenna performance. The simulation results showed that SAR values were between 1.6 and 2 W/g (10 g SAR) and were within the allowed range for medical applications. Additionally, the VSWR remained in an acceptable range from 1.15 to 2. Depending on the size and location of the tumor, the antenna return losses of the four models ranged from <math><mo>-</mo></math> 36 to <math><mo>-</mo></math> 18.5 dB. The effect of bending was tested to determine the flexibility. The antenna proved to be highly effective and capable of detecting small tumors with diameters of up to 2 mm.</p>","PeriodicalId":48490,"journal":{"name":"Physical and Engineering Sciences in Medicine","volume":" ","pages":"851-861"},"PeriodicalIF":2.4,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11408408/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140294895","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01Epub Date: 2024-09-02DOI: 10.1007/s13246-024-01434-9
Young Woo Kim, Simon Biggs, Elizabeth Claridge Mackonis
Manual contouring of organs at risk (OAR) is time-consuming and subject to inter-observer variability. AI-based auto-contouring is proposed as a solution to these problems if it can produce clinically acceptable results. This study investigated the performance of multiple AI-based auto-contouring systems in different OAR segmentations. The auto-contouring was performed using seven different AI-based segmentation systems (Radiotherapy AI, Limbus AI version 1.5 and 1.6, Therapanacea, MIM, Siemens AI-Rad Companion and RadFormation) on a total of 42 clinical cases with varying anatomical sites. Volumetric and surface dice similarity coefficients and maximum Hausdorff distance (HD) between the expert's contours and automated contours were calculated to evaluate their performance. Radiotherapy AI has shown better performance than other software in most tested structures considered in the head and neck, and brain cases. No specific software had shown overall superior performance over other software in lung, breast, pelvis and abdomen cases. Each tested AI system was able to produce comparable contours to the experts' contours of organs at risk which can potentially be used for clinical use. A reduced performance of AI systems in the case of small and complex anatomical structures was found and reported, showing that it is still essential to review each contour produced by AI systems for clinical uses. This study has also demonstrated a method of comparing contouring software options which could be replicated in clinics or used for ongoing quality assurance of purchased systems.
{"title":"Investigation on performance of multiple AI-based auto-contouring systems in organs at risks (OARs) delineation.","authors":"Young Woo Kim, Simon Biggs, Elizabeth Claridge Mackonis","doi":"10.1007/s13246-024-01434-9","DOIUrl":"10.1007/s13246-024-01434-9","url":null,"abstract":"<p><p>Manual contouring of organs at risk (OAR) is time-consuming and subject to inter-observer variability. AI-based auto-contouring is proposed as a solution to these problems if it can produce clinically acceptable results. This study investigated the performance of multiple AI-based auto-contouring systems in different OAR segmentations. The auto-contouring was performed using seven different AI-based segmentation systems (Radiotherapy AI, Limbus AI version 1.5 and 1.6, Therapanacea, MIM, Siemens AI-Rad Companion and RadFormation) on a total of 42 clinical cases with varying anatomical sites. Volumetric and surface dice similarity coefficients and maximum Hausdorff distance (HD) between the expert's contours and automated contours were calculated to evaluate their performance. Radiotherapy AI has shown better performance than other software in most tested structures considered in the head and neck, and brain cases. No specific software had shown overall superior performance over other software in lung, breast, pelvis and abdomen cases. Each tested AI system was able to produce comparable contours to the experts' contours of organs at risk which can potentially be used for clinical use. A reduced performance of AI systems in the case of small and complex anatomical structures was found and reported, showing that it is still essential to review each contour produced by AI systems for clinical uses. This study has also demonstrated a method of comparing contouring software options which could be replicated in clinics or used for ongoing quality assurance of purchased systems.</p>","PeriodicalId":48490,"journal":{"name":"Physical and Engineering Sciences in Medicine","volume":" ","pages":"1123-1140"},"PeriodicalIF":2.4,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11408550/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142113560","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01Epub Date: 2024-03-27DOI: 10.1007/s13246-024-01413-0
Abdullah Abuhaimed, Huda Mujammami, Khaled AlEnazi, Ahmed Abanomy, Yazeed Alashban, Colin J Martin
The kV cone beam computed tomography (CBCT) is one of the most common imaging modalities used for image-guided radiation therapy (IGRT) procedures. Additional doses are delivered to patients, thus assessment and optimization of the imaging doses should be taken into consideration. This study aimed to investigate the influence of using fixed and patient-specific FOVs on the patient dose. Monte Carlo simulations were performed to simulate kV beams of the imaging system integrated into Truebeam linear accelerator using BEAMnrc code. Organ and size-specific effective doses resulting from chest and pelvis scanning protocols were estimated with DOSXYZnrc code using a phantom library developed by the National Cancer Institute (NCI) of the US. The library contains 193 (100 male and 93 female) mesh-type computational human adult phantoms, and it covers a large ratio of patient sizes with heights and weights ranging from 150 to 190 cm and 40 to 125 kg. The imaging doses were assessed using variable FOV of three sizes, small (S), medium (M), and large (L) for each scan region. The results show that the FOV and the patient size played a major role in the scan dose. The average percentage differences (PDs) for doses of organs that were fully inside the different FOVs were relatively low, all within 11% for both protocols. However, doses to organs that were scanned partially or near the FOVs were affected significantly. For the chest protocol, the inclusion of the thyroid in the scan field could give a dose of 1-7 mGy/100 mAs to the thyroid, compared to 0.4-1 mGy/100 mAs when it was excluded. Similarly, on average, testes doses could be 6 mGy/100 mAs for the male pelvis protocol compared to 3 mGy/100 mAs when it did not lie in the field irradiated. These dose differences resulted in an average increase of up to 27% in the size-specific effective dose of the protocols. Since changing the field size is possible for CBCT scans, the results suggest that patient-specific scanning protocols could be applied for each scan area in a manner similar to that used for CT scans. Adjustment of the FOV size should be subject to the clinical needs, and assist in improving the treatment accuracy. The patient's height and weight might be considered as the main factors upon which, the selection of the appropriate patient-specific protocol is based. This approach should optimize the imaging doses used for IGRT procedures by minimizing doses of a large ratio of patients.
{"title":"Estimation of organ and effective doses of CBCT scans of radiotherapy using size-specific field of view (FOV): a Monte Carlo study.","authors":"Abdullah Abuhaimed, Huda Mujammami, Khaled AlEnazi, Ahmed Abanomy, Yazeed Alashban, Colin J Martin","doi":"10.1007/s13246-024-01413-0","DOIUrl":"10.1007/s13246-024-01413-0","url":null,"abstract":"<p><p>The kV cone beam computed tomography (CBCT) is one of the most common imaging modalities used for image-guided radiation therapy (IGRT) procedures. Additional doses are delivered to patients, thus assessment and optimization of the imaging doses should be taken into consideration. This study aimed to investigate the influence of using fixed and patient-specific FOVs on the patient dose. Monte Carlo simulations were performed to simulate kV beams of the imaging system integrated into Truebeam linear accelerator using BEAMnrc code. Organ and size-specific effective doses resulting from chest and pelvis scanning protocols were estimated with DOSXYZnrc code using a phantom library developed by the National Cancer Institute (NCI) of the US. The library contains 193 (100 male and 93 female) mesh-type computational human adult phantoms, and it covers a large ratio of patient sizes with heights and weights ranging from 150 to 190 cm and 40 to 125 kg. The imaging doses were assessed using variable FOV of three sizes, small (S), medium (M), and large (L) for each scan region. The results show that the FOV and the patient size played a major role in the scan dose. The average percentage differences (PDs) for doses of organs that were fully inside the different FOVs were relatively low, all within 11% for both protocols. However, doses to organs that were scanned partially or near the FOVs were affected significantly. For the chest protocol, the inclusion of the thyroid in the scan field could give a dose of 1-7 mGy/100 mAs to the thyroid, compared to 0.4-1 mGy/100 mAs when it was excluded. Similarly, on average, testes doses could be 6 mGy/100 mAs for the male pelvis protocol compared to 3 mGy/100 mAs when it did not lie in the field irradiated. These dose differences resulted in an average increase of up to 27% in the size-specific effective dose of the protocols. Since changing the field size is possible for CBCT scans, the results suggest that patient-specific scanning protocols could be applied for each scan area in a manner similar to that used for CT scans. Adjustment of the FOV size should be subject to the clinical needs, and assist in improving the treatment accuracy. The patient's height and weight might be considered as the main factors upon which, the selection of the appropriate patient-specific protocol is based. This approach should optimize the imaging doses used for IGRT procedures by minimizing doses of a large ratio of patients.</p>","PeriodicalId":48490,"journal":{"name":"Physical and Engineering Sciences in Medicine","volume":" ","pages":"895-906"},"PeriodicalIF":2.4,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140307345","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01Epub Date: 2024-05-13DOI: 10.1007/s13246-024-01427-8
Martín Durán-Santos, R Salazar-Varas, Gibran Etcheverry
Regarding motor processes, modeling healthy people's brains is essential to understand the brain activity in people with motor impairments. However, little research has been undertaken when external forces disturb limbs, having limited information on physiological pathways. Therefore, in this paper, a nonlinear delay differential embedding model is used to estimate the brain response elicited by externally controlled wrist movement in healthy individuals. The aim is to improve the understanding of the relationship between a controlled wrist movement and the generated cortical activity of healthy people, helping to disclose the underlying mechanisms and physiological relationships involved in the motor event. To evaluate the model, a public database from the Delft University of Technology is used, which contains electroencephalographic recordings of ten healthy subjects while wrist movement was externally provoked by a robotic system. In this work, the cortical response related to movement is identified via Independent Component Analysis and estimated based on a nonlinear delay differential embedding model. After a cross-validation analysis, the model performance reaches 90.21% ± 4.46% Variance Accounted For, and Correlation 95.14% ± 2.31%. The proposed methodology allows to select the model degree, to estimate a general predominant operation mode of the cortical response elicited by wrist movement. The obtained results revealed two facts that had not previously been reported: the movement's acceleration affects the cortical response, and a common delayed activity is shared among subjects. Going forward, identifying biomarkers related to motor tasks could aid in the evaluation of rehabilitation treatments for patients with upper limbs motor impairments.
{"title":"Modeling the cortical response elicited by wrist manipulation via a nonlinear delay differential embedding.","authors":"Martín Durán-Santos, R Salazar-Varas, Gibran Etcheverry","doi":"10.1007/s13246-024-01427-8","DOIUrl":"10.1007/s13246-024-01427-8","url":null,"abstract":"<p><p>Regarding motor processes, modeling healthy people's brains is essential to understand the brain activity in people with motor impairments. However, little research has been undertaken when external forces disturb limbs, having limited information on physiological pathways. Therefore, in this paper, a nonlinear delay differential embedding model is used to estimate the brain response elicited by externally controlled wrist movement in healthy individuals. The aim is to improve the understanding of the relationship between a controlled wrist movement and the generated cortical activity of healthy people, helping to disclose the underlying mechanisms and physiological relationships involved in the motor event. To evaluate the model, a public database from the Delft University of Technology is used, which contains electroencephalographic recordings of ten healthy subjects while wrist movement was externally provoked by a robotic system. In this work, the cortical response related to movement is identified via Independent Component Analysis and estimated based on a nonlinear delay differential embedding model. After a cross-validation analysis, the model performance reaches 90.21% ± 4.46% Variance Accounted For, and Correlation 95.14% ± 2.31%. The proposed methodology allows to select the model degree, to estimate a general predominant operation mode of the cortical response elicited by wrist movement. The obtained results revealed two facts that had not previously been reported: the movement's acceleration affects the cortical response, and a common delayed activity is shared among subjects. Going forward, identifying biomarkers related to motor tasks could aid in the evaluation of rehabilitation treatments for patients with upper limbs motor impairments.</p>","PeriodicalId":48490,"journal":{"name":"Physical and Engineering Sciences in Medicine","volume":" ","pages":"1-14"},"PeriodicalIF":2.4,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140913273","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}